Pregenerated sensors for CTLA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026011Ensembl transcript IDs: ENSMUST00000027164.9, ENSMUST00000097720.4
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCATCTAGTTTCCAAGCCAGTTGGTGCAGGACCTCGAGTCCAACCTaGTGGATTAGTGTCCTAAGCTCCCCAGCCAAACCTCCCCAGGAC | + |
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Preference number: 1 (lower is better) Translates to: SSSFQASWCRTSSPT*WISVLSSPAKPPQD Trigger: GTCCTGGGGAGGTTTGGCTGGGGAGCTTAGGACACTAATCCATCAGGTTGGACTCGAGGTCCTGCACCAACTGGCTTGGAAACTAGATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR-3UTR CCA 90 bp | TCAGGAACTCTTGTGCATCCCATCCTACCATCTGCTGCTTCCTGTGGCATTAACAACACTGCCAGCTTTTaGTTTCCTTGCAAATCATTG | + |
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Preference number: 2 (lower is better) Translates to: SGTLVHPILPSAASCGINNTASF*FPCKSL Trigger: CAATGATTTGCAAGGAAACCAAAAGCTGGCAGTGTT...GTTAATGCCACAGGAAGCAGCAGATGGTAGGATGGGATGCACAAGAGTTCCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR-3UTR GCA 90 bp | CTTAAAAATACATCTTGGAACACTACAACCTTTGGAACCACTGGCTATGTCACACCTTTCTTTGGGCTGTaGCATTCCCTAATGTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: LKNTSWNTTTFGTTGYVTPFFGL*HSLMFP Trigger: AGGGAACATTAGGGAATGGCACAGCCCAAAGAAAGG...TGTGACATAGCCAGTGGTTCCAAAGGTTGTAGTGTTCCAAGATGTATTTTTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR-3UTR CCA 90 bp | TTCAAACCACCAGCAAATACACAACAGCACATGAAACACCCATGTACAATATTAGAACACTACAACCTTTaGAACCACTGGCTATGTCAC | + |
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Preference number: 2 (lower is better) Translates to: FKPPANTQQHMKHPCTILEHYNL*NHWLCH Trigger: GTGACATAGCCAGTGGTTCCAAAGGTTGTAGTGTTC...TAATATTGTACATGGGTGTTTCATGTGCTGTTGTGTATTTGCTGGTGGTTTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR-3UTR GCA 90 bp | ATCCTTATGCTGCTTCCAAGTGATGCTTTTAGTAAAATGGTTCTGACACAACAGTTAGAGACTGAAGTATaGTCCTTCTTCTTCATAAAC | + |
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Preference number: 2 (lower is better) Translates to: ILMLLPSDAFSKMVLTQQLETEV*SFFFIN Trigger: GTTTATGAAGAAGAAGGAGCATACTTCAGTCTCTAA...CTGTTGTGTCAGAACCATTTTACTAAAAGCATCACTTGGAAGCAGCATAAGGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR TCA 72 bp | TTCCAAGCCAGTTGGTGCAGGACCTCGAGTCCAACCTaGTGGATTAGTGTCCTAAGCTCCCCAGCCAAACCT | + |
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Preference number: 3 (lower is better) Translates to: FQASWCRTSSPT*WISVLSSPAKP Trigger: AGGTTTGGCTGGGGAGCTTAGGACACTAATCCATCAGGTTGGACTCGAGGTCCTGCACCAACTGGCTTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR GCA 72 bp | CTTGAAGACAGTGTTCTGTCAGGTTCATACAAACACTaGCAGCTTTTGGTTTCCTTGCAAATCATTGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: LEDSVLSGSYKH*QLLVSLQIIEE Trigger: TTCTTCAATGATTTGCAAGGAAACCAAAAGCTGGCAGTGTTTGTATGAACCTGACAGAACACTGTCTTCAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR-3UTR CAA 90 bp | TTCAAACCACCAGCAAATACACAACAGCACATGAAACACCCATGTACAATATTAAAAGGAAAGTTGAAATaGCCTCAGCTTTTAGAGACT | + |
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Preference number: 3 (lower is better) Translates to: FKPPANTQQHMKHPCTILKGKLK*PQLLET Trigger: AGTCTCTAAAAGCTGAGGCAATTTCAACTTTCCTTT...TAATATTGTACATGGGTGTTTCATGTGCTGTTGTGTATTTGCTGGTGGTTTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR-3UTR CAA 90 bp | CAATATTACTTAAAAATACATCTTGGAACACTACAACCTTTGGAACCACTGGCTGAGAGAAAAGGAAAGTaGAAATTGCCTCAGCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: QYYLKIHLGTLQPLEPLAERKGK*KLPQLL Trigger: TAAAAGCTGAGGCAATTTCAACTTTCCTTTTCTCTC...AGCCAGTGGTTCCAAAGGTTGTAGTGTTCCAAGATGTATTTTTAAGTAATATTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR CCA 90 bp | CCTCATCTAGTTTCCAAGCCAGTTGGTGCAGGACCTCGAGTCCAACCTGATGGACATGCCCACAAAGTATaGCGGTGGGTACATGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: PHLVSKPVGAGPRVQPDGHAHKV*RWVHEF Trigger: GAACTCATGTACCCACCGCCATACTTTGTGGGCATG...TCCATCAGGTTGGACTCGAGGTCCTGCACCAACTGGCTTGGAAACTAGATGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR CAA 72 bp | CCATCCTACCATCTGCTGCTTCCTGTGGCATTAACTTaGTGTTTTCGAGGAGCCATAGTACTTGTAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: PSYHLLLPVALT*CFRGAIVLVGG Trigger: ACCCCCTACAAGTACTATGGCTCCTCGAAAACACAAAGTTAATGCCACAGGAAGCAGCAGATGGTAGGATGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR CAA 72 bp | TCCTTTCTTTGGGCTGTGCCATTCCCTAATGTTCCCTaGACCCCACACCATAATGCTATATCCTTATGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SFLWAVPFPNVP*TPHHNAISLCC Trigger: GCAGCATAAGGATATAGCATTATGGTGTGGGGTCAAGGGAACATTAGGGAATGGCACAGCCCAAAGAAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR TCA 90 bp | CTTAAAAATACATCTTGGAACACTACAACCTTTGGAACCACTGGCTATGTCACAGCTAGCCAACACCACTaGAGGTTGGGTCACCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: LKNTSWNTTTFGTTGYVTASQHH*RLGHLY Trigger: ATACAGGTGACCCAACCTTCAGTGGTGTTGGCTAGC...TGTGACATAGCCAGTGGTTCCAAAGGTTGTAGTGTTCCAAGATGTATTTTTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR TCA 90 bp | ACTGAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAGTTGATGGGAATAAAGCTAGCCAACACCACTaGAGGTTGGGTCACCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: TEVCSFFFINGLSVDGNKASQHH*RLGHLY Trigger: ATACAGGTGACCCAACCTTCAGTGGTGTTGGCTAGC...TTTATTCCCATCAACTGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTCAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR TCA 90 bp | TTCAAACCACCAGCAAATACACAACAGCACATGAAACACCCATGTACAATATTAATGGCGGTGGGTACATaGGTTCCACCTTGCAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: FKPPANTQQHMKHPCTILMAVGT*VPPCRG Trigger: ACCTCTGCAAGGTGGAACTCATGTACCCACCGCCAT...TAATATTGTACATGGGTGTTTCATGTGCTGTTGTGTATTTGCTGGTGGTTTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR GCA 90 bp | TTCAAACCACCAGCAAATACACAACAGCACATGAAACACCCATGTACAATATTAATTTGGTCATTTGTCTaGCGCAGCACAGTCACCCGG | + |
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Preference number: 4 (lower is better) Translates to: FKPPANTQQHMKHPCTILIWSFV*RSTVTR Trigger: CCGGGTGACTGTGCTGCGGCAGACAAATGACCAAAT...TAATATTGTACATGGGTGTTTCATGTGCTGTTGTGTATTTGCTGGTGGTTTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR GCA 90 bp | GAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAGTTGATGGGAATAAAATAATTTGGTCATTTGTCTaGCGCAGCACAGTCACCCGG | + |
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Preference number: 4 (lower is better) Translates to: EVCSFFFINGLSVDGNKIIWSFV*RSTVTR Trigger: CCGGGTGACTGTGCTGCGGCAGACAAATGACCAAAT...TATTTTATTCCCATCAACTGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CCA 90 bp | CTTAAAAATACATCTTGGAACACTACAACCTTTGGAACCACTGGCTATGTCACAGTTGGGTCACCTGTATaGCTTCAGAGAAGACTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LKNTSWNTTTFGTTGYVTVGSPV*LQRRLG Trigger: TCCCAGTCTTCTCTGAAGCCATACAGGTGACCCAAC...TGTGACATAGCCAGTGGTTCCAAAGGTTGTAGTGTTCCAAGATGTATTTTTAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR CCA 90 bp | ACTGAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAGTTGATGGGAATAAAGTTGGGTCACCTGTATaGCTTCAGAGAAGACTGGGA | + |
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Preference number: 4 (lower is better) Translates to: TEVCSFFFINGLSVDGNKVGSPV*LQRRLG Trigger: TCCCAGTCTTCTCTGAAGCCATACAGGTGACCCAAC...TTTATTCCCATCAACTGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CCA 90 bp | ACTGAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAGTTGATGGGAATAAACAGACCTCAGTCATTTaGTCATTTGTCTGCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: TEVCSFFFINGLSVDGNKQTSVI*SFVCRS Trigger: GCTGCGGCAGACAAATGACCAAATGACTGAGGTCTG...TTTATTCCCATCAACTGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CCA 90 bp | CCTCAGCTTTTAGAGACTGAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAACATTCTGGCTCTGTTaGGGGCATTTTCACATAGAC | + |
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Preference number: 4 (lower is better) Translates to: PQLLETEVCSFFFINGLSTFWLC*GHFHID Trigger: GTCTATGTGAAAATGCCCCCAACAGAGCCAGAATGT...TGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTCAGTCTCTAAAAGCTGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR TCA 90 bp | ATCCTTATGCTGCTTCCAAGTGATGCTTTTAGTAAAATGGTTCTGACACAACAGTCAGTCCTTGGATGGTaGGGTTCACTCTGCTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: ILMLLPSDAFSKMVLTQQSVLGW*GSLCFH Trigger: ATGAAAGCAGAGTGAACCTCACCATCCAAGGACTGA...CTGTTGTGTCAGAACCATTTTACTAAAAGCATCACTTGGAAGCAGCATAAGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR TCA 90 bp | ACTGAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAGTTGATGGGAATAAATCAGTCCTTGGATGGTaGGGTTCACTCTGCTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: TEVCSFFFINGLSVDGNKSVLGW*GSLCFH Trigger: ATGAAAGCAGAGTGAACCTCACCATCCAAGGACTGA...TTTATTCCCATCAACTGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTCAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CCA 90 bp | TTCAAACCACCAGCAAATACACAACAGCACATGAAACACCCATGTACAATATTACAGACCTCAGTCATTTaGTCATTTGTCTGCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FKPPANTQQHMKHPCTILQTSVI*SFVCRS Trigger: GCTGCGGCAGACAAATGACCAAATGACTGAGGTCTG...TAATATTGTACATGGGTGTTTCATGTGCTGTTGTGTATTTGCTGGTGGTTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR CCA 90 bp | GAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAGTTGATGGGAATAAAATACATGCCCACAAAGTATaGCGGTGGGTACATGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: EVCSFFFINGLSVDGNKIHAHKV*RWVHEF Trigger: GAACTCATGTACCCACCGCCATACTTTGTGGGCATG...TATTTTATTCCCATCAACTGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CCA 90 bp | GCATCCAGCTTTCTATTAAAGAGAGGCATACTCTCCTTAAAATATACAAACAGGCACAAAGTATGGCGGTaGGTACATGAGTTCCACCTT | + |
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Preference number: 4 (lower is better) Translates to: ASSFLLKRGILSLKYTNRHKVWR*VHEFHL Trigger: AAGGTGGAACTCATGTACCCACCGCCATACTTTGTG...CCTGTTTGTATATTTTAAGGAGAGTATGCCTCTCTTTAATAGAAAGCTGGATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR CCA 90 bp | TTCAAACCACCAGCAAATACACAACAGCACATGAAACACCCATGTACAATATTAACATTCTGGCTCTGTTaGGGGCATTTTCACATAGAC | + |
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Preference number: 4 (lower is better) Translates to: FKPPANTQQHMKHPCTILTFWLC*GHFHID Trigger: GTCTATGTGAAAATGCCCCCAACAGAGCCAGAATGT...TAATATTGTACATGGGTGTTTCATGTGCTGTTGTGTATTTGCTGGTGGTTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| 3UTR CAA 72 bp | TATTACTTAAAAATACATCTTGGAACACTACAACCTTaGGAACCACTGGCTATGTCACATAGCTCTGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: YYLKIHLGTLQP*EPLAMSHSSVN Trigger: ATTCACAGAGCTATGTGACATAGCCAGTGGTTCCAAAGGTTGTAGTGTTCCAAGATGTATTTTTAAGTAATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS TCA 90 bp | TCTGCGTCCCGTTGCCCATGCCCACAAAGTATGGCGGTGGGTACATaGGTTCCACCTTGCAGAGGTACAGTCCCGTGTCAACAGCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: SASRCPCPQSMAVGT*VPPCRGTVPCQQLS Trigger: TGAGAGCTGTTGACACGGGACTGTACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGGCATGGGCAACGGGACGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CCA 90 bp | GACATAAATCTGCGTCCCGTTGCCCATGCCCACAAAGTATGGCGGTaGGTACATGAGTTCCACCTTGCAGAGGTACAGTCCCGTGTCAAC | + |
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Preference number: 5 (lower is better) Translates to: DINLRPVAHAHKVWR*VHEFHLAEVQSRVN Trigger: GTTGACACGGGACTGTACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGGCATGGGCAACGGGACGCAGATTTATGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CCA 90 bp | AGCAATGACATAAATCTGCGTCCCGTTGCCCATGCCCACAAAGTATaGCGGTGGGTACATGAGTTCCACCTTGCAGAGGTACAGTCCCGT | + |
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Preference number: 5 (lower is better) Translates to: SNDINLRPVAHAHKV*RWVHEFHLAEVQSR Trigger: ACGGGACTGTACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGGCATGGGCAACGGGACGCAGATTTATGTCATTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CAA 90 bp | CCTCATCTAGTTTCCAAGCCAGTTGGTGCAGGACCTCGAGTCCAACCTGATGGATACATGAGTTCCACCTaGCAGAGGTACAGTCCCGTG | + |
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Preference number: 5 (lower is better) Translates to: PHLVSKPVGAGPRVQPDGYMSST*QRYSPV Trigger: CACGGGACTGTACCTCTGCAAGGTGGAACTCATGTA...TCCATCAGGTTGGACTCGAGGTCCTGCACCAACTGGCTTGGAAACTAGATGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS TCA 90 bp | TTCACATGGAAAGCTGGCGACACCATGGCTGCTAGCCAACACCACTaGAGGTTGGGTCACCTGTATGGCTTCAGAGAAGACTGGGATGAA | + |
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Preference number: 5 (lower is better) Translates to: FTWKAGDTMAASQHH*RLGHLYGFREDWDE Trigger: TTCATCCCAGTCTTCTCTGAAGCCATACAGGTGACCCAACCTTCAGTGGTGTTGGCTAGCAGCCATGGTGTCGCCAGCTTTCCATGTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS TCA 90 bp | GGATCCAAAGGAGGAAGTCAGAATCCGGGCATGGTTCTGGATCAATaGCATAAATCTGCGTCCCGTTGCCCATGCCCACAAAGTATGGCG | + |
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Preference number: 5 (lower is better) Translates to: GSKGGSQNPGMVLDQ*HKSASRCPCPQSMA Trigger: CGCCATACTTTGTGGGCATGGGCAACGGGACGCAGATTTATGTCATTGATCCAGAACCATGCCCGGATTCTGACTTCCTCCTTTGGATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS GCA 90 bp | TCTGTGAATGTCGTGGCACAGACCTCAGTCATTTGGTCATTTGTCTaGCGCAGCACAGTCACCCGGACCTCATCAGTGTTGTGTGATGGT | + |
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Preference number: 5 (lower is better) Translates to: SVNVVAQTSVIWSFV*RSTVTRTSSVLCDG Trigger: ACCATCACACAACACTGATGAGGTCCGGGTGACTGTGCTGCGGCAGACAAATGACCAAATGACTGAGGTCTGTGCCACGACATTCACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CCA 90 bp | GGAAAGCTGGCGACACCATGGCTGCTAGCCAACACCACTGAAGGTTaGGTCACCTGTATGGCTTCAGAGAAGACTGGGATGAAAAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: GKLATPWLLANTTEG*VTCMASEKTGMKRR Trigger: TCTTCTTTTCATCCCAGTCTTCTCTGAAGCCATACAGGTGACCCAACCTTCAGTGGTGTTGGCTAGCAGCCATGGTGTCGCCAGCTTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CCA 90 bp | ATCAATGACATAAATCTGCGTCCCGTTGCCCATGCCCACAAAGTATaGCGGTGGGTACATGAGTTCCACCTTGCAGAGGTACAGTCCCGT | + |
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Preference number: 5 (lower is better) Translates to: INDINLRPVAHAHKV*RWVHEFHLAEVQSR Trigger: ACGGGACTGTACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGGCATGGGCAACGGGACGCAGATTTATGTCATTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS CCA 90 bp | GTGTTGTGTGATGGTGAATATTCACATGGAAAGCTGGCGACACCATaGCTGCTAGCCAACACCACTGAAGGTTGGGTCACCTGTATGGCT | + |
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Preference number: 5 (lower is better) Translates to: VLCDGEYSHGKLATP*LLANTTEGWVTCMA Trigger: AGCCATACAGGTGACCCAACCTTCAGTGGTGTTGGCTAGCAGCCATGGTGTCGCCAGCTTTCCATGTGAATATTCACCATCACACAACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CCA 90 bp | ACTGTATTCTTCTCTGTGAATGTCGTGGCACAGACCTCAGTCATTTaGTCATTTGTCTGCCGCAGCACAGTCACCCGGACCTCATCAGTG | + |
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Preference number: 5 (lower is better) Translates to: TVFFSVNVVAQTSVI*SFVCRSTVTRTSSV Trigger: CACTGATGAGGTCCGGGTGACTGTGCTGCGGCAGACAAATGACCAAATGACTGAGGTCTGTGCCACGACATTCACAGAGAAGAATACAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS-3UTR CAA 90 bp | GCTGTGCCATTCCCTAATGTTCCCTTGACCCCACACCATAATGCTATATCCTTAACAGACCTCAGTCATTaGGTCATTTGTCTGCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: AVPFPNVPLTPHHNAISLTDLSH*VICLPQ Trigger: CTGCGGCAGACAAATGACCAAATGACTGAGGTCTGT...TAAGGATATAGCATTATGGTGTGGGGTCAAGGGAACATTAGGGAATGGCACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR CAA 90 bp | CCTCAGCTTTTAGAGACTGAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAACAGACCTCAGTCATTaGGTCATTTGTCTGCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: PQLLETEVCSFFFINGLSTDLSH*VICLPQ Trigger: CTGCGGCAGACAAATGACCAAATGACTGAGGTCTGT...TGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTCAGTCTCTAAAAGCTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CAA 90 bp | CCTCAGCTTTTAGAGACTGAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAAACAGCTCTCAGTCCTaGGATGGTGAGGTTCACTCT | + |
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Preference number: 5 (lower is better) Translates to: PQLLETEVCSFFFINGLSNSSQS*DGEVHS Trigger: AGAGTGAACCTCACCATCCAAGGACTGAGAGCTGTT...TGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTCAGTCTCTAAAAGCTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CAA 90 bp | TTCAAACCACCAGCAAATACACAACAGCACATGAAACACCCATGTACAATATTAAACAGCTCTCAGTCCTaGGATGGTGAGGTTCACTCT | + |
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Preference number: 5 (lower is better) Translates to: FKPPANTQQHMKHPCTILNSSQS*DGEVHS Trigger: AGAGTGAACCTCACCATCCAAGGACTGAGAGCTGTT...TAATATTGTACATGGGTGTTTCATGTGCTGTTGTGTATTTGCTGGTGGTTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS-3UTR CAA 90 bp | GAAGTATGCTCCTTCTTCTTCATAAACGGCCTTTCAGTTGATGGGAATAAAATACACATTCTGGCTCTGTaGGGGGCATTTTCACATAGA | + |
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Preference number: 5 (lower is better) Translates to: EVCSFFFINGLSVDGNKIHILAL*GAFSHR Trigger: TCTATGTGAAAATGCCCCCAACAGAGCCAGAATGTG...TATTTTATTCCCATCAACTGAAAGGCCGTTTATGAAGAAGAAGGAGCATACTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000097720.4 |
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| CDS-3UTR CAA 90 bp | CAATATTACTTAAAAATACATCTTGGAACACTACAACCTTTGGAACCACTGGCTCACATTCTGGCTCTGTaGGGGGCATTTTCACATAGA | + |
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Preference number: 5 (lower is better) Translates to: QYYLKIHLGTLQPLEPLAHILAL*GAFSHR Trigger: TCTATGTGAAAATGCCCCCAACAGAGCCAGAATGTG...AGCCAGTGGTTCCAAAGGTTGTAGTGTTCCAAGATGTATTTTTAAGTAATATTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS CCA 72 bp | CTGCGTCCCGTTGCCCATGCCCACAAAGTATGGCGGTaGGTACATGAGTTCCACCTTGCAGAGGTACAGTCC | + |
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Preference number: 6 (lower is better) Translates to: LRPVAHAHKVWR*VHEFHLAEVQS Trigger: GGACTGTACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGGCATGGGCAACGGGACGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS GCA 72 bp | GTCGTGGCACAGACCTCAGTCATTTGGTCATTTGTCTaGCGCAGCACAGTCACCCGGACCTCATCAGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: VVAQTSVIWSFV*RSTVTRTSSVL Trigger: CAACACTGATGAGGTCCGGGTGACTGTGCTGCGGCAGACAAATGACCAAATGACTGAGGTCTGTGCCACGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CAA 90 bp | TTGCCCATGCCCACAAAGTATGGCGGTGGGTACATGAGTTCCACCTaGCAGAGGTACAGTCCCGTGTCAACAGCTCTCAGTCCTTGGATG | + |
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Preference number: 6 (lower is better) Translates to: LPMPTKYGGGYMSST*QRYSPVSTALSPWM Trigger: CATCCAAGGACTGAGAGCTGTTGACACGGGACTGTACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGGCATGGGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CCA 72 bp | TTCTCTGTGAATGTCGTGGCACAGACCTCAGTCATTTaGTCATTTGTCTGCCGCAGCACAGTCACCCGGACC | + |
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Preference number: 6 (lower is better) Translates to: FSVNVVAQTSVI*SFVCRSTVTRT Trigger: GGTCCGGGTGACTGTGCTGCGGCAGACAAATGACCAAATGACTGAGGTCTGTGCCACGACATTCACAGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CAA 72 bp | CCCACAAAGTATGGCGGTGGGTACATGAGTTCCACCTaGCAGAGGTACAGTCCCGTGTCAACAGCTCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: PTKYGGGYMSST*QRYSPVSTALS Trigger: ACTGAGAGCTGTTGACACGGGACTGTACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS TCA 72 bp | GGAGGAAGTCAGAATCCGGGCATGGTTCTGGATCAATaGCATAAATCTGCGTCCCGTTGCCCATGCCCACAA | + |
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Preference number: 6 (lower is better) Translates to: GGSQNPGMVLDQ*HKSASRCPCPQ Trigger: TTGTGGGCATGGGCAACGGGACGCAGATTTATGTCATTGATCCAGAACCATGCCCGGATTCTGACTTCCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027164.9 |
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| CDS CCA 72 bp | ATAAATCTGCGTCCCGTTGCCCATGCCCACAAAGTATaGCGGTGGGTACATGAGTTCCACCTTGCAGAGGTA | + |
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Preference number: 6 (lower is better) Translates to: INLRPVAHAHKV*RWVHEFHLAEV Trigger: TACCTCTGCAAGGTGGAACTCATGTACCCACCGCCATACTTTGTGGGCATGGGCAACGGGACGCAGATTTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CAA 90 bp | TGGTCATTTGTCTGCCGCAGCACAGTCACCCGGACCTCATCAGTGTaGTGTGATGGTGAATATTCACATGGAAAGCTGGCGACACCATGG | + |
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Preference number: 6 (lower is better) Translates to: WSFVCRSTVTRTSSV*CDGEYSHGKLATPW Trigger: CCATGGTGTCGCCAGCTTTCCATGTGAATATTCACCATCACACAACACTGATGAGGTCCGGGTGACTGTGCTGCGGCAGACAAATGACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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| CDS CAA 90 bp | TTCCACCTTGCAGAGGTACAGTCCCGTGTCAACAGCTCTCAGTCCTaGGATGGTGAGGTTCACTCTGCTTTCATTAAAGGTACCACTGCA | + |
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Preference number: 6 (lower is better) Translates to: FHLAEVQSRVNSSQS*DGEVHSAFIKGTTA Trigger: TGCAGTGGTACCTTTAATGAAAGCAGAGTGAACCTCACCATCCAAGGACTGAGAGCTGTTGACACGGGACTGTACCTCTGCAAGGTGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027164.9 ENSMUST00000097720.4 |
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