Pregenerated sensors for CTLA2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044258Ensembl transcript IDs: ENSMUST00000021880.10, ENSMUST00000224054.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCAATGTTACACTACACAAAGCAGGTGCTGGAAGCTGTGATGGGATaGCTCCTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCATACCA | + |
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Preference number: 1 (lower is better) Translates to: SMLHYTKQVLEAVMG*LLLLSLSSIIPLIP Trigger: TGGTATGAGAGGAATGATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTCCAGCACCTGCTTTGTGTAGTGTAACATTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR GCA 90 bp | CTCATACCAGGAGACAGAAGACTTCCAAGGCAATGGCAGAGTGCTTaGTTCACTTCTAGCCTATGCTATTGTTACCAGTCAAGCCACAGC | + |
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Preference number: 1 (lower is better) Translates to: LIPGDRRLPRQWQSA*FTSSLCYCYQSSHS Trigger: GCTGTGGCTTGACTGGTAACAATAGCATAGGCTAGAAGTGAAGCAAGCACTCTGCCATTGCCTTGGAAGTCTTCTGTCTCCTGGTATGAG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR GCA 90 bp | GCCCATGTAGAAGCTGGTCTTGCCCTGCTCATAGTCTGCATTGTGTaGCTCAATTTTCTTCTTATTCTCCTCCCACACGAGTCTTCTGTG | + |
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Preference number: 1 (lower is better) Translates to: AHVEAGLALLIVCIV*LNFLLILLPHESSV Trigger: CACAGAAGACTCGTGTGGGAGGAGAATAAGAAGAAAATTGAGGCACACAATGCAGACTATGAGCAGGGCAAGACCAGCTTCTACATGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR CCA 90 bp | AGCATCATTCCTCTCATACCAGGAGACAGAAGACTTCCAAGGCAATaGCAGAGTGCTTGCTTCACTTCTAGCCTATGCTATTGTTACCAG | + |
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Preference number: 1 (lower is better) Translates to: SIIPLIPGDRRLPRQ*QSACFTSSLCYCYQ Trigger: CTGGTAACAATAGCATAGGCTAGAAGTGAAGCAAGCACTCTGCCATTGCCTTGGAAGTCTTCTGTCTCCTGGTATGAGAGGAATGATGCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR TCA 90 bp | GAACAAAACATCCATGGAAGGAGTTTCAGAGACAAAGTTTGGAGCTaGGACGAAAGGATGGACCATCTAGAGACTGCCAAAACTAGTAGT | + |
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Preference number: 1 (lower is better) Translates to: EQNIHGRSFRDKVWS*DERMDHLETAKTSS Trigger: ACTACTAGTTTTGGCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGAAACTCCTTCCATGGATGTTTTGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR TCA 90 bp | ACTGTGAGCATCCACTTCTGTGTTTGCCAGGCCAAAGAACTCACATaGTATGTACTCACTGATAAGAGGATATTAGCCCAGAAACTTAGA | + |
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Preference number: 1 (lower is better) Translates to: TVSIHFCVCQAKELT*YVLTDKRILAQKLR Trigger: TCTAAGTTTCTGGGCTAATATCCTCTTATCAGTGAGTACATATCATGTGAGTTCTTTGGCCTGGCAAACACAGAAGTGGATGCTCACAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR TCA 90 bp | AGGATGGACCATCTAGAGACTGCCAAAACTAGTAGTTTTATTGCATaGATGTGCCTCAGAGTTTACACCACAGTGTTAATCTTACATGAA | + |
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Preference number: 1 (lower is better) Translates to: RMDHLETAKTSSFIA*MCLRVYTTVLILHE Trigger: TTCATGTAAGATTAACACTGTGGTGTAAACTCTGAGGCACATTCATGCAATAAAACTACTAGTTTTGGCAGTCTCTAGATGGTCCATCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR TCA 90 bp | ATCTTCATATTCAGGCAAATCAGGAGCCATTTCTCCTCTATTCAGTaGGTTTCCATAGCAATTTGTCTTGAATTCTTCTGGAGTCAAGTC | + |
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Preference number: 1 (lower is better) Translates to: IFIFRQIRSHFSSIQ*VSIAICLEFFWSQV Trigger: GACTTGACTCCAGAAGAATTCAAGACAAATTGCTATGGAAACTCACTGAATAGAGGAGAAATGGCTCCTGATTTGCCTGAATATGAAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR-3UTR GCA 90 bp | CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATACGAAGCTGTGATGGGATaGCTCCTGCTGTTGAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: PWVLSLAPPLGALCSIQYEAVMG*LLLLSL Trigger: GAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTC...GTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR-3UTR TCA 90 bp | GGGGGCCCTGTGTTCCATCCAATACCTAACTGTGAGCATCCACTTCTGTGTTTGGATGCCTCCTGCTGTTaGGCCTCTCCAGCATCATTC | + |
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Preference number: 2 (lower is better) Translates to: GGPVFHPIPNCEHPLLCLDASCC*ASPASF Trigger: GAATGATGCTGGAGAGGCTCAACAGCAGGAGGCATC...CAAACACAGAAGTGGATGCTCACAGTTAGGTATTGGATGGAACACAGGGCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR CAA 90 bp | TACACAAAGCAGGTGCTGGAAGCTGTGATGGGATGCCTCCTGCTGTaGAGCCTCTCCAGCATCATTCCTCTCATACCAGGAGACAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: YTKQVLEAVMGCLLL*SLSSIIPLIPGDRR Trigger: TCTTCTGTCTCCTGGTATGAGAGGAATGATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTCCAGCACCTGCTTTGTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGCTGTGATGGGATGCCTCCTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCCAATGGCAGAGTGCTTaGTTCACTTCTAGCCTATGC | + |
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Preference number: 2 (lower is better) Translates to: EAVMGCLLLLSLSSIIPLQWQSA*FTSSLC Trigger: GCATAGGCTAGAAGTGAAGCAAGCACTCTGCCATTG...GAGAGGAATGATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGCTGTGATGGGATGCCTCCTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCAGACTTCCAAGGCAATaGCAGAGTGCTTGCTTCACT | + |
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Preference number: 2 (lower is better) Translates to: EAVMGCLLLLSLSSIIPLRLPRQ*QSACFT Trigger: AGTGAAGCAAGCACTCTGCCATTGCCTTGGAAGTCT...GAGAGGAATGATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR-3UTR GCA 90 bp | ATGGGATGCCTCCTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCATACCAGGACAATGGCAGAGTGCTTaGTTCACTTCTAGCCTATGC | + |
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Preference number: 2 (lower is better) Translates to: MGCLLLLSLSSIIPLIPGQWQSA*FTSSLC Trigger: GCATAGGCTAGAAGTGAAGCAAGCACTCTGCCATTG...TCCTGGTATGAGAGGAATGATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCATACCAGGAGACAGAAGACTCATTATCCAAACTTaGATCAGGGGGTGGAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: LLLLSLSSIIPLIPGDRRLIIQT*IRGWSS Trigger: GCTGCTCCACCCCCTGATCCAAGTTTGGATAATGAG...TCTTCTGTCTCCTGGTATGAGAGGAATGATGCTGGAGAGGCTCAACAGCAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR-3UTR CCA 90 bp | CTCTCATACCAGGAGACAGAAGACTTCCAAGGCAATGGCAGAGTGCTTGCTTCAGGCCCATGTAGAAGCTaGTCTTGCCCTGCTCATAGT | + |
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Preference number: 2 (lower is better) Translates to: LSYQETEDFQGNGRVLASGPCRS*SCPAHS Trigger: ACTATGAGCAGGGCAAGACCAGCTTCTACATGGGCC...TGAAGCAAGCACTCTGCCATTGCCTTGGAAGTCTTCTGTCTCCTGGTATGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR CAA 90 bp | TCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTaGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: SYCCSTYRVADPFSS*GTFSSSSIGGPVFH Trigger: ATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR-3UTR GCA 90 bp | GCTGAGCCCTTCCAGGTGTCAGATAGCTGTTCTTTCCCAAATCTTCATATTCAGGAAGCTGTGATGGGATaGCTCCTGCTGTTGAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: AEPFQVSDSCSFPNLHIQEAVMG*LLLLSL Trigger: GAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTC...CTGAATATGAAGATTTGGGAAAGAACAGCTATCTGACACCTGGAAGGGCTCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR-3UTR TCA 90 bp | CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATACGCCAAAGAACTCACATaGTATGTACTCACTGATAAG | + |
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Preference number: 2 (lower is better) Translates to: PWVLSLAPPLGALCSIQYAKELT*YVLTDK Trigger: CTTATCAGTGAGTACATATCATGTGAGTTCTTTGGC...GTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR CAA 90 bp | GAATTGGGAACAAAACATCCATGGAAGGAGTTTCAGAGACAAAGTTaGGAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCCAAAAC | + |
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Preference number: 2 (lower is better) Translates to: ELGTKHPWKEFQRQS*ELRRKDGPSRDCQN Trigger: GTTTTGGCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGAAACTCCTTCCATGGATGTTTTGTTCCCAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR CAA 90 bp | TCCATAGCAATTTGTCTTGAATTCTTCTGGAGTCAAGTCACTAAATaGATTCAGGCCCATGTAGAAGCTGGTCTTGCCCTGCTCATAGTC | + |
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Preference number: 2 (lower is better) Translates to: SIAICLEFFWSQVTK*IQAHVEAGLALLIV Trigger: GACTATGAGCAGGGCAAGACCAGCTTCTACATGGGCCTGAATCAATTTAGTGACTTGACTCCAGAAGAATTCAAGACAAATTGCTATGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCCCTTCCAGGTGTCAGATAGCTGTTCTTTCCCAAATCTTCATATTCAGGCACATAGCAATTTGTCTTaGATTCTTCTGGAGTCAAGT | + |
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Preference number: 2 (lower is better) Translates to: EPFQVSDSCSFPNLHIQAHSNLS*ILLESS Trigger: ACTTGACTCCAGAAGAATTCAAGACAAATTGCTATG...TGCCTGAATATGAAGATTTGGGAAAGAACAGCTATCTGACACCTGGAAGGGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCCCTTCCAGGTGTCAGATAGCTGTTCTTTCCCAAATCTTCATATTCAGGCATTCTCCTCTATTCAGTaGGTTTCCATAGCAATTTGT | + |
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Preference number: 2 (lower is better) Translates to: EPFQVSDSCSFPNLHIQAFSSIQ*VSIAIC Trigger: ACAAATTGCTATGGAAACTCACTGAATAGAGGAGAA...TGCCTGAATATGAAGATTTGGGAAAGAACAGCTATCTGACACCTGGAAGGGCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR CAA 90 bp | CCCACACGAGTCTTCTGTGTCTTTCTTCATTCAGATTGTAGGCTTTaGCAAATTTCGTCTTCCATTCTTTCCACTCATTATCCAAACTTG | + |
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Preference number: 2 (lower is better) Translates to: PTRVFCVFLHSDCRL*QISSSILSTHYPNL Trigger: CAAGTTTGGATAATGAGTGGAAAGAATGGAAGACGAAATTTGCAAAAGCCTACAATCTGAATGAAGAAAGACACAGAAGACTCGTGTGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGAAACTTAGACTACCCAAGATACAAGATACAATTTGCAAAACATATGAAAGACTTCCAAGGCAATaGCAGAGTGCTTGCTTCACT | + |
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Preference number: 2 (lower is better) Translates to: AQKLRLPKIQDTICKTYERLPRQ*QSACFT Trigger: AGTGAAGCAAGCACTCTGCCATTGCCTTGGAAGTCT...TTCATATGTTTTGCAAATTGTATCTTGTATCTTGGGTAGTCTAAGTTTCTGGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR CCA 72 bp | CGACTCCCCTACCCACCCAGTCCCACTTCTTGGCCCTaGCATCCCCCTGTACTGAGGCATATAAAGTTTGTA | + |
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Preference number: 3 (lower is better) Translates to: RLPYPPSPTSWP*HPPVLRHIKFV Trigger: TACAAACTTTATATGCCTCAGTACAGGGGGATGCCAGGGCCAAGAAGTGGGACTGGGTGGGTAGGGGAGTCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR-3UTR CAA 90 bp | CCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATACGGATGCCTCCTGCTGTaGAGCCTCTCCAGCATCATT | + |
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Preference number: 3 (lower is better) Translates to: PWVLSLAPPLGALCSIQYGCLLL*SLSSII Trigger: AATGATGCTGGAGAGGCTCAACAGCAGGAGGCATCC...GTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR GCA 72 bp | CACTACACAAAGCAGGTGCTGGAAGCTGTGATGGGATaGCTCCTGCTGTTGAGCCTCTCCAGCATCATTCCT | + |
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Preference number: 3 (lower is better) Translates to: HYTKQVLEAVMG*LLLLSLSSIIP Trigger: AGGAATGATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTCCAGCACCTGCTTTGTGTAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGGTGCTGGAAGCTGTGATGGGATGCCTCCTGCTGTTGAGCCTCTCCAGCATTCAGATTGTAGGCTTTaGCAAATTTCGTCTTCCATT | + |
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Preference number: 3 (lower is better) Translates to: AGAGSCDGMPPAVEPLQHSDCRL*QISSSI Trigger: AATGGAAGACGAAATTTGCAAAAGCCTACAATCTGA...ATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTCCAGCACCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR CCA 72 bp | CCTCTCATACCAGGAGACAGAAGACTTCCAAGGCAATaGCAGAGTGCTTGCTTCACTTCTAGCCTATGCTAT | + |
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Preference number: 3 (lower is better) Translates to: PLIPGDRRLPRQ*QSACFTSSLCY Trigger: ATAGCATAGGCTAGAAGTGAAGCAAGCACTCTGCCATTGCCTTGGAAGTCTTCTGTCTCCTGGTATGAGAGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCATACCAGGAGACAGAAGACTTTTTCAGAGACAAAGTTaGGAGCTGAGACGAAAGGAT | + |
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Preference number: 3 (lower is better) Translates to: LLLSLSSIIPLIPGDRRLFQRQS*ELRRKD Trigger: ATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGAAA...AAGTCTTCTGTCTCCTGGTATGAGAGGAATGATGCTGGAGAGGCTCAACAGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR GCA 72 bp | GGAGACAGAAGACTTCCAAGGCAATGGCAGAGTGCTTaGTTCACTTCTAGCCTATGCTATTGTTACCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: GDRRLPRQWQSA*FTSSLCYCYQS Trigger: TGACTGGTAACAATAGCATAGGCTAGAAGTGAAGCAAGCACTCTGCCATTGCCTTGGAAGTCTTCTGTCTCC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021880.10 ENSMUST00000224054.2 |
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| 3UTR GCA 72 bp | AGGCAATGGCAGAGTGCTTGCTTCACTTCTAGCCTATaGTATTGTTACCAGTCAAGCCACAGCTGTTACTCT | + |
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Preference number: 3 (lower is better) Translates to: RQWQSACFTSSL*YCYQSSHSCYS Trigger: AGAGTAACAGCTGTGGCTTGACTGGTAACAATAGCATAGGCTAGAAGTGAAGCAAGCACTCTGCCATTGCCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR TCA 72 bp | ATCCACTTCTGTGTTTGCCAGGCCAAAGAACTCACATaGTATGTACTCACTGATAAGAGGATATTAGCCCAG | + |
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Preference number: 3 (lower is better) Translates to: IHFCVCQAKELT*YVLTDKRILAQ Trigger: CTGGGCTAATATCCTCTTATCAGTGAGTACATATCATGTGAGTTCTTTGGCCTGGCAAACACAGAAGTGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR-3UTR CAA 90 bp | TTTCAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCAAACTAGTAGTTTTATaGCATGAATGTGCCTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: FQRQSLELRRKDGPSRDCKLVVL*HECASE Trigger: CTCTGAGGCACATTCATGCAATAAAACTACTAGTTT...GCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR TCA 72 bp | GTGCCTCAGAGTTTACACCACAGTGTTAATCTTACATaGATTCAATGTTACACTACACAAAGCAGGTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: VPQSLHHSVNLT*IQCYTTQSRCW Trigger: CCAGCACCTGCTTTGTGTAGTGTAACATTGAATTCATGTAAGATTAACACTGTGGTGTAAACTCTGAGGCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR TCA 72 bp | TTCAGGCAAATCAGGAGCCATTTCTCCTCTATTCAGTaGGTTTCCATAGCAATTTGTCTTGAATTCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: FRQIRSHFSSIQ*VSIAICLEFFW Trigger: CCAGAAGAATTCAAGACAAATTGCTATGGAAACTCACTGAATAGAGGAGAAATGGCTCCTGATTTGCCTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR TCA 72 bp | CATCTAGAGACTGCCAAAACTAGTAGTTTTATTGCATaGATGTGCCTCAGAGTTTACACCACAGTGTTAATC | + |
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Preference number: 3 (lower is better) Translates to: HLETAKTSSFIA*MCLRVYTTVLI Trigger: GATTAACACTGTGGTGTAAACTCTGAGGCACATTCATGCAATAAAACTACTAGTTTTGGCAGTCTCTAGATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR TCA 90 bp | TCCTCCATTGGGGGCCCTGTGTTCCATCCAATACCTAACTGTGAGCATCCACTTAGGGGGTGGAGCAGCTaGCATCATTCCCAAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SSIGGPVFHPIPNCEHPLRGWSS*HHSQAE Trigger: CTCTGCTTGGGAATGATGTCAGCTGCTCCACCCCCT...AAGTGGATGCTCACAGTTAGGTATTGGATGGAACACAGGGCCCCCAATGGAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR GCA 90 bp | GCAGGTGCTGGAAGCTGTGATGGGATGCCTCCTGCTGTTGAGCCTCTCCAGCATAAGACAGCACTGAAGTaGTGCAGCTTCTGTTCACAG | + |
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Preference number: 4 (lower is better) Translates to: AGAGSCDGMPPAVEPLQHKTALK*CSFCSQ Trigger: CTGTGAACAGAAGCTGCAGCACTTCAGTGCTGTCTT...ATGCTGGAGAGGCTCAACAGCAGGAGGCATCCCATCACAGCTTCCAGCACCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR CAA 72 bp | TGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTaGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: CSTYRVADPFSS*GTFSSSSIGGP Trigger: AGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR CCA 90 bp | GGGGGCCCTGTGTTCCATCCAATACCTAACTGTGAGCATCCACTTCTGTGTTTGGGCCCATGTAGAAGCTaGTCTTGCCCTGCTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: GGPVFHPIPNCEHPLLCLGPCRS*SCPAHS Trigger: ACTATGAGCAGGGCAAGACCAGCTTCTACATGGGCC...CAAACACAGAAGTGGATGCTCACAGTTAGGTATTGGATGGAACACAGGGCCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR CCA 90 bp | GGGGCCCTGTGTTCCATCCAATACCTAACTGTGAGCATCCACTTCTGTGTTTGCCTCATTATCCAAACTTaGATCAGGGGGTGGAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GALCSIQYLTVSIHFCVCLIIQT*IRGWSS Trigger: GCTGCTCCACCCCCTGATCCAAGTTTGGATAATGAG...GCAAACACAGAAGTGGATGCTCACAGTTAGGTATTGGATGGAACACAGGGCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR CAA 72 bp | CCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATaGGGGGCCCTGTGTTCCATCCAATACCTAACTGTG | + |
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Preference number: 4 (lower is better) Translates to: PLAPWVLSLAPP*GALCSIQYLTV Trigger: CACAGTTAGGTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR GCA 90 bp | GGGGGCCCTGTGTTCCATCCAATACCTAACTGTGAGCATCCACTTCTGTGTTTGACAGCACTGAAGTGCTaGAGCTTCTGTTCACAGATA | + |
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Preference number: 4 (lower is better) Translates to: GGPVFHPIPNCEHPLLCLTALKC*SFCSQI Trigger: TATCTGTGAACAGAAGCTGCAGCACTTCAGTGCTGT...CAAACACAGAAGTGGATGCTCACAGTTAGGTATTGGATGGAACACAGGGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR GCA 90 bp | CTCCTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCATACCAGGAGACAGAAGACAGATTGTAGGCTTTTaGAAATTTCGTCTTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: LLLLSLSSIIPLIPGDRRQIVGF*KFRLPF Trigger: GAATGGAAGACGAAATTTGCAAAAGCCTACAATCTG...TCTTCTGTCTCCTGGTATGAGAGGAATGATGCTGGAGAGGCTCAACAGCAGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| 3UTR CAA 72 bp | CATCCAATACCTAACTGTGAGCATCCACTTCTGTGTTaGCCAGGCCAAAGAACTCACATGATATGTACTCAC | + |
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Preference number: 4 (lower is better) Translates to: HPIPNCEHPLLC*PGQRTHMICTH Trigger: GTGAGTACATATCATGTGAGTTCTTTGGCCTGGCAAACACAGAAGTGGATGCTCACAGTTAGGTATTGGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR GCA 90 bp | TACATGAATTCAATGTTACACTACACAAAGCAGGTGCTGGAAGCTGTGATGGGATGTCCAATACTGAAGTaGTGCAGCTTCTGTTCACAG | + |
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Preference number: 4 (lower is better) Translates to: YMNSMLHYTKQVLEAVMGCPILK*CSFCSQ Trigger: CTGTGAACAGAAGCTGCAGCACTTCAGTATTGGACA...TCCCATCACAGCTTCCAGCACCTGCTTTGTGTAGTGTAACATTGAATTCATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR CAA 72 bp | ATTTGTCTTGAATTCTTCTGGAGTCAAGTCACTAAATaGATTCAGGCCCATGTAGAAGCTGGTCTTGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: ICLEFFWSQVTK*IQAHVEAGLAL Trigger: CAGGGCAAGACCAGCTTCTACATGGGCCTGAATCAATTTAGTGACTTGACTCCAGAAGAATTCAAGACAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| CDS-3UTR TCA 90 bp | GCCCAGAAACTTAGACTACCCAAGATACAAGATACAATTTGCAAAACATATGAAGCAGGAAGACAGCACTaGAGTGCTGCAGCTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: AQKLRLPKIQDTICKTYEAGRQH*SAAASV Trigger: AACAGAAGCTGCAGCACTTCAGTGCTGTCTTCCTGC...TTCATATGTTTTGCAAATTGTATCTTGTATCTTGGGTAGTCTAAGTTTCTGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR TCA 90 bp | ATGGAAGGAGTTTCAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTTCTCCTCTATTCAGTaGGTTTCCATAGCAATTTGT | + |
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Preference number: 4 (lower is better) Translates to: MEGVSETKFGAETKGWTIFSSIQ*VSIAIC Trigger: ACAAATTGCTATGGAAACTCACTGAATAGAGGAGAA...GATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGAAACTCCTTCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR TCA 90 bp | GATTGTAGGCTTTTGCAAATTTCGTCTTCCATTCTTTCCACTCATTATCCAAACTTCCCAAGCAGAGGATaGGCAGGAAGACAGCACTAT | + |
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Preference number: 4 (lower is better) Translates to: DCRLLQISSSILSTHYPNFPSRG*AGRQHY Trigger: ATAGTGCTGTCTTCCTGCTCATCCTCTGCTTGGGAA...GTTTGGATAATGAGTGGAAAGAATGGAAGACGAAATTTGCAAAAGCCTACAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| CDS-3UTR TCA 90 bp | TACATGAATTCAATGTTACACTACACAAAGCAGGTGCTGGAAGCTGTGATGGGACATAGCAATTTGTCTTaGATTCTTCTGGAGTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: YMNSMLHYTKQVLEAVMGHSNLS*ILLESS Trigger: ACTTGACTCCAGAAGAATTCAAGACAAATTGCTATG...TCCCATCACAGCTTCCAGCACCTGCTTTGTGTAGTGTAACATTGAATTCATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR GCA 90 bp | GGCTTTTGCAAATTTCGTCTTCCATTCTTTCCACTCATTATCCAAACTTGGATCCCAATACTGAAGTGCTaGAGCTTCTGTTCACAGATA | + |
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Preference number: 4 (lower is better) Translates to: GFCKFRLPFFPLIIQTWIPILKC*SFCSQI Trigger: TATCTGTGAACAGAAGCTGCAGCACTTCAGTATTGG...GATCCAAGTTTGGATAATGAGTGGAAAGAATGGAAGACGAAATTTGCAAAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| 3UTR CAA 72 bp | GTCTTCTGTGTCTTTCTTCATTCAGATTGTAGGCTTTaGCAAATTTCGTCTTCCATTCTTTCCACTCATTAT | + |
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Preference number: 4 (lower is better) Translates to: VFCVFLHSDCRL*QISSSILSTHY Trigger: ATAATGAGTGGAAAGAATGGAAGACGAAATTTGCAAAAGCCTACAATCTGAATGAAGAAAGACACAGAAGAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| CDS-3UTR CAA 90 bp | TTGTTACCAGTCAAGCCACAGCTGTTACTCTGGCTGAGCCCTTCCAGGTGTCAGCAAAACATAGACAAGTaGTTGTCCAATACTGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: LLPVKPQLLLWLSPSRCQQNIDK*LSNTEV Trigger: CACTTCAGTATTGGACAACAACTTGTCTATGTTTTG...CTGACACCTGGAAGGGCTCAGCCAGAGTAACAGCTGTGGCTTGACTGGTAACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| CDS-3UTR CAA 90 bp | CTGCTGTTGAGCCTCTCCAGCATCATTCCTCTCATACCAGGAGACAGAAGACTTAGTCAAGTCACTAAATaGATTCAGGCCCATGTAGAA | + |
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Preference number: 5 (lower is better) Translates to: LLLSLSSIIPLIPGDRRLSQVTK*IQAHVE Trigger: TTCTACATGGGCCTGAATCAATTTAGTGACTTGACT...AAGTCTTCTGTCTCCTGGTATGAGAGGAATGATGCTGGAGAGGCTCAACAGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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| CDS-3UTR CAA 90 bp | AGGCTTTTGCAAATTTCGTCTTCCATTCTTTCCACTCATTATCCAAACTTGGATGGAAGACAGCACTATTaGGGTTCCCAAAACATAGAC | + |
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Preference number: 5 (lower is better) Translates to: RLLQISSSILSTHYPNLDGRQHY*GSQNID Trigger: GTCTATGTTTTGGGAACCCAAATAGTGCTGTCTTCC...ATCCAAGTTTGGATAATGAGTGGAAAGAATGGAAGACGAAATTTGCAAAAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224054.2 |
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| CDS CAA 72 bp | ATTTCGTCTTCCATTCTTTCCACTCATTATCCAAACTaGGATCAGGGGGTGGAGCAGCTGACATCATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: ISSSILSTHYPN*DQGVEQLTSFP Trigger: TGGGAATGATGTCAGCTGCTCCACCCCCTGATCCAAGTTTGGATAATGAGTGGAAAGAATGGAAGACGAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021880.10 |
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