Pregenerated sensors for CTHRC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054196Ensembl transcript IDs: ENSMUST00000067072.5, ENSMUST00000132192.3, ENSMUST00000226433.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAACCTTAGAGCAGGTGTGCCAGGAATaGCGTTGGCCCCAGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: EEVEMKNMDDAIQLKTLEQVCQE*RWPQGS Trigger: GGAGCCCTGGGGCCAACGGCATTCCTGGCACACCTG...CTCTAAGGTTTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR GCA 90 bp | TTTATGAAAATAAACTTCTGTTTTCCGGGTGGTCGTGGTAAGCAGAACCATGAACTGGGATGCCAGGTGTaGCAGGAATGCCGTTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: FMKINFCFPGGRGKQNHELGCQV*QECRWP Trigger: GGGCCAACGGCATTCCTGGCACACCTGGCATCCCAG...TTCATGGTTCTGCTTACCACGACCACCCGGAAAACAGAAGTTTATTTTCATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR CCA 90 bp | GAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAACCTTAGAGTGCCAGGAATGCCGTTaGCCCCAGGGCTCCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: EEVEMKNMDDAIQLKTLECQECR*PQGSHH Trigger: GTGATGGGAGCCCTGGGGCCAACGGCATTCCTGGCA...CTCTAAGGTTTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR GCA 90 bp | GAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAACCTTAGAGCATCCCGACCTGGGATaGCAGGTGTGCCAGGAATGC | + |
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Preference number: 4 (lower is better) Translates to: EEVEMKNMDDAIQLKTLEHPDLG*QVCQEC Trigger: GCATTCCTGGCACACCTGGCATCCCAGGTCGGGATG...CTCTAAGGTTTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR CCA 90 bp | GAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAACCTTAGAGGAATCCATCCCGACCTaGGATGCCAGGTGTGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: EEVEMKNMDDAIQLKTLEESIPT*DARCAR Trigger: CCTGGCACACCTGGCATCCCAGGTCGGGATGGATTC...CTCTAAGGTTTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR TCA 90 bp | TTTATGAAAATAAACTTCTGTTTTCCGGGTGGTCGTGGTAAGCAGAACCATGAACTCCCTTTTCCCCTTTaGATCCATCCCGACCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: FMKINFCFPGGRGKQNHELPFPL*IHPDLG Trigger: TCCCAGGTCGGGATGGATTCAAAGGGGAAAAGGGAG...TTCATGGTTCTGCTTACCACGACCACCCGGAAAACAGAAGTTTATTTTCATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR GCA 90 bp | TTTATGAAAATAAACTTCTGTTTTCCGGGTGGTCGTGGTAAGCAGAACCATGAATCTACCACCTCCCTCTaGCGGATCAGCGCTTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: FMKINFCFPGGRGKQNHESTTSL*RISAFC Trigger: GCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGA...TTCATGGTTCTGCTTACCACGACCACCCGGAAAACAGAAGTTTATTTTCATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR CCA 90 bp | TTTATGAAAATAAACTTCTGTTTTCCGGGTGGTCGTGGTAAGCAGAACCATGAAACACTGCTTATAGTTTaGGGTCCAGGACTCCTCAAA | + |
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Preference number: 4 (lower is better) Translates to: FMKINFCFPGGRGKQNHETLLIV*GPGLLK Trigger: TTTGAGGAGTCCTGGACCCCAAACTATAAGCAGTGT...TTCATGGTTCTGCTTACCACGACCACCCGGAAAACAGAAGTTTATTTTCATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR GCA 90 bp | AATAGAGCAGAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAATTTTCCCAAGATCTATaGCATAGTTCAGCGAACTCC | + |
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Preference number: 4 (lower is better) Translates to: NRAEEVEMKNMDDAIQLKFSQDL*HSSANS Trigger: GGAGTTCGCTGAACTATGGCATAGATCTTGGGAAAA...TTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTCTGCTCTATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS GCA 90 bp | GTACACTCCAGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTTaGTTCACCTTGGGGTTCTCAGAGGCGCTGATCGGTGCGGACAAC | + |
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Preference number: 5 (lower is better) Translates to: VHSRSTTSLCRISAF*FTLGFSEALIGADN Trigger: GTTGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTGGAGTGTAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000226433.2 |
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| CDS TCA 90 bp | GCCGGATCAGCGCTTTTTGCTTCACCTTGGGGTTCTCAGAGGCGCTaGTCGGTGCGGACAACTGTAGCAGCAGCAGCAGCACAAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: AGSALFASPWGSQRR*SVRTTVAAAAAQGR Trigger: TCTTCCTTGTGCTGCTGCTGCTGCTACAGTTGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS GCA 90 bp | CCATTATACAGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTTaGTTCACCTTGGGGTTCTCAGAGGCGCTGATCGGTGCGGACAAC | + |
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Preference number: 5 (lower is better) Translates to: PLYRSTTSLCRISAF*FTLGFSEALIGADN Trigger: GTTGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTGTATAATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067072.5 |
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| CDS TCA 90 bp | AGACACGGAATTCCATCCAGTAGAAGCGTCTCCTTTGGGGTAATCTaGACAGGTGCCGACCCAGATGGCCACATCTACCAATCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: RHGIPSSRSVSFGVI*TGADPDGHIYQSST Trigger: GGTGCTGGATTGGTAGATGTGGCCATCTGGGTCGGCACCTGTTCAGATTACCCCAAAGGAGACGCTTCTACTGGATGGAATTCCGTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS GCA 90 bp | GGTCCTTGTAGACACATTCCATTATACAGGTCTACCACCTCCCTCTaGCGGATCAGCGCTTTTTGCTTCACCTTGGGGTTCTCAGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: GPCRHIPLYRSTTSL*RISAFCFTLGFSEA Trigger: CGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTGTATAATGGAATGTGTCTACAAGGACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000132192.3 |
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| CDS TCA 90 bp | AGAGGTCCTGAACATTCAGCTCCATTAAATGTAAAATACCAGCGCTaGCAGCATGCATTCCTGCATTTGAGCCGAAGCGAGCCACTGAAC | + |
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Preference number: 5 (lower is better) Translates to: RGPEHSAPLNVKYQR*QHAFLHLSRSEPLN Trigger: GTTCAGTGGCTCGCTTCGGCTCAAATGCAGGAATGCATGCTGTCAGCGCTGGTATTTTACATTTAATGGAGCTGAATGTTCAGGACCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS-3UTR CAA 90 bp | AATAGAGCAGAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAGTGCCAGGAATGCCGTaGGCCCCAGGGCTCCCATCA | + |
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Preference number: 5 (lower is better) Translates to: NRAEEVEMKNMDDAIQLKVPGMP*APGLPS Trigger: TGATGGGAGCCCTGGGGCCAACGGCATTCCTGGCAC...TTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTCTGCTCTATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS TCA 90 bp | GCTTCCTTGGTCCAGATAGATGATGGCTTCGATGGGAAGAGGTCCTaGACATTCAGCTCCATTAAATGTAAAATACCAGCGCTGACAGCA | + |
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Preference number: 5 (lower is better) Translates to: ASLVQIDDGFDGKRS*TFSSIKCKIPALTA Trigger: TGCTGTCAGCGCTGGTATTTTACATTTAATGGAGCTGAATGTTCAGGACCTCTTCCCATCGAAGCCATCATCTATCTGGACCAAGGAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS-3UTR CAA 90 bp | TTTATGAAAATAAACTTCTGTTTTCCGGGTGGTCGTGGTAAGCAGAACCATGAACCGGATCAGCGCTTTTaGCTTCACCTTGGGGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: FMKINFCFPGGRGKQNHEPDQRF*LHLGVL Trigger: GAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGG...TTCATGGTTCTGCTTACCACGACCACCCGGAAAACAGAAGTTTATTTTCATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR CAA 90 bp | GAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAACCTTAGAGGCTTTTTGCTTCACCTaGGGGTTCTCAGAGGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: EEVEMKNMDDAIQLKTLEAFCFT*GFSEAL Trigger: CAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGC...CTCTAAGGTTTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR CAA 90 bp | GAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAACCTTAGAGTCTCCCTTTTCCCCTTaGAATCCATCCCGACCTGGG | + |
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Preference number: 5 (lower is better) Translates to: EEVEMKNMDDAIQLKTLESPFSP*NPSRPG Trigger: CCCAGGTCGGGATGGATTCAAAGGGGAAAAGGGAGA...CTCTAAGGTTTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS-3UTR CAA 90 bp | AATAGAGCAGAAGAGGTTGAGATGAAAAACATGGATGATGCCATACAACTTAAAAACACTGCTTATAGTTaGGGGTCCAGGACTCCTCAA | + |
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Preference number: 5 (lower is better) Translates to: NRAEEVEMKNMDDAIQLKNTAYS*GSRTPQ Trigger: TTGAGGAGTCCTGGACCCCAAACTATAAGCAGTGTT...TTTAAGTTGTATGGCATCATCCATGTTTTTCATCTCAACCTCTTCTGCTCTATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS GCA 72 bp | ATCCATCCCGACCTGGGATGCCAGGTGTGCCAGGAATaGCGTTGGCCCCAGGGCTCCCATCACGACCGGGAA | + |
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Preference number: 6 (lower is better) Translates to: IHPDLGCQVCQE*RWPQGSHHDRE Trigger: TTCCCGGTCGTGATGGGAGCCCTGGGGCCAACGGCATTCCTGGCACACCTGGCATCCCAGGTCGGGATGGAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000132192.3 |
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| CDS CCA 72 bp | GCATTCTCCCTTTTCCCCTTTGAATCCATCCCGACCTaGGATGCCAGGTGTGCCAGGAATGCCGTTGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: AFSLFPFESIPT*DARCARNAVGP Trigger: GGGGCCAACGGCATTCCTGGCACACCTGGCATCCCAGGTCGGGATGGATTCAAAGGGGAAAAGGGAGAATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000132192.3 |
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| CDS CAA 72 bp | ACCTCCCTCTGCCGGATCAGCGCTTTTTGCTTCACCTaGGGGTTCTCAGAGGCGCTGATCGGTGCGGACAAC | + |
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Preference number: 6 (lower is better) Translates to: TSLCRISAFCFT*GFSEALIGADN Trigger: GTTGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS CAA 72 bp | CAGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTaGCTTCACCTTGGGGTTCTCAGAGGCGCTGATCGG | + |
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Preference number: 6 (lower is better) Translates to: QVYHLPLPDQRF*LHLGVLRGADR Trigger: CCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067072.5 ENSMUST00000132192.3 ENSMUST00000226433.2 |
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| CDS CAA 90 bp | AGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTTGCTTCACCTaGGGGTTCTCAGAGGCGCTGATCGGTGCGGACAACTGTAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RSTTSLCRISAFCFT*GFSEALIGADNCSS Trigger: GCTGCTACAGTTGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS CAA 90 bp | TGTACACTCCAGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTaGCTTCACCTTGGGGTTCTCAGAGGCGCTGATCGGTGCGGACAA | + |
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Preference number: 6 (lower is better) Translates to: CTLQVYHLPLPDQRF*LHLGVLRGADRCGQ Trigger: TTGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTGGAGTGTACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226433.2 |
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| CDS GCA 72 bp | AGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTTaGTTCACCTTGGGGTTCTCAGAGGCGCTGATCGGT | + |
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Preference number: 6 (lower is better) Translates to: RSTTSLCRISAF*FTLGFSEALIG Trigger: ACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000067072.5 ENSMUST00000132192.3 ENSMUST00000226433.2 |
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| CDS CAA 90 bp | TCCATTATACAGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTaGCTTCACCTTGGGGTTCTCAGAGGCGCTGATCGGTGCGGACAA | + |
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Preference number: 6 (lower is better) Translates to: SIIQVYHLPLPDQRF*LHLGVLRGADRCGQ Trigger: TTGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTGTATAATGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067072.5 |
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| CDS CAA 90 bp | TCCATTATACAGGTCTACCACCTCCCTCTGCCGGATCAGCGCTTTTaGCTTCACCTTGGGGTTCTCAGAGGCGCTGATCGGTGCGGACNN | + |
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Preference number: 6 (lower is better) Translates to: SIIQVYHLPLPDQRF*LHLGVLRGADRCGX Trigger: NNGTCCGCACCGATCAGCGCCTCTGAGAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTGTATAATGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000132192.3 |
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| CDS TCA 72 bp | ACAGAACTCGCAGAGCACTGTTGGAGCGCATCTTCGTaGATGTACACTCCAGGTCTACCACCTCCCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: TELAEHCWSASS*MYTPGLPPPSA Trigger: GGCAGAGGGAGGTGGTAGACCTGGAGTGTACATTCACGAAGATGCGCTCCAACAGTGCTCTGCGAGTTCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226433.2 |
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| CDS CAA 90 bp | CATTTGAGCCGAAGCGAGCCACTGAACAGAACTCGCAGAGCACTGTaGGAGCGCATCTTCGTGAATGTACACTCCAGGTCTACCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: HLSRSEPLNRTRRAL*ERIFVNVHSRSTTS Trigger: GGAGGTGGTAGACCTGGAGTGTACATTCACGAAGATGCGCTCCAACAGTGCTCTGCGAGTTCTGTTCAGTGGCTCGCTTCGGCTCAAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226433.2 |
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| CDS CCA 72 bp | CTCCTTTGGGGTAATCTGAACAGGTGCCGACCCAGATaGCCACATCTACCAATCCAGCACCAATCCCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: LLWGNLNRCRPR*PHLPIQHQSLH Trigger: GTGAAGGGATTGGTGCTGGATTGGTAGATGTGGCCATCTGGGTCGGCACCTGTTCAGATTACCCCAAAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS CAA 72 bp | CGAAGCGAGCCACTGAACAGAACTCGCAGAGCACTGTaGGAGCGCATCTTCGTGAATGTACACTCCAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: RSEPLNRTRRAL*ERIFVNVHSRS Trigger: AGACCTGGAGTGTACATTCACGAAGATGCGCTCCAACAGTGCTCTGCGAGTTCTGTTCAGTGGCTCGCTTCG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226433.2 |
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| CDS CAA 72 bp | CGAAGCGAGCCACTGAACAGAACTCGCAGAGCACTGTaGGAGCGCATCTTCGTGAATGTACACTCCGCAATT | + |
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Preference number: 6 (lower is better) Translates to: RSEPLNRTRRAL*ERIFVNVHSAI Trigger: AATTGCGGAGTGTACATTCACGAAGATGCGCTCCAACAGTGCTCTGCGAGTTCTGTTCAGTGGCTCGCTTCG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067072.5 |
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| CDS CAA 90 bp | CATTTGAGCCGAAGCGAGCCACTGAACAGAACTCGCAGAGCACTGTaGGAGCGCATCTTCGTGAATGTACACTCCGCAATTTTCCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: HLSRSEPLNRTRRAL*ERIFVNVHSAIFPR Trigger: TCTTGGGAAAATTGCGGAGTGTACATTCACGAAGATGCGCTCCAACAGTGCTCTGCGAGTTCTGTTCAGTGGCTCGCTTCGGCTCAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067072.5 |
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| CDS TCA 72 bp | ATTCCATCCAGTAGAAGCGTCTCCTTTGGGGTAATCTaGACAGGTGCCGACCCAGATGGCCACATCTACCAA | + |
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Preference number: 6 (lower is better) Translates to: IPSSRSVSFGVI*TGADPDGHIYQ Trigger: TTGGTAGATGTGGCCATCTGGGTCGGCACCTGTTCAGATTACCCCAAAGGAGACGCTTCTACTGGATGGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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| CDS GCA 72 bp | AGACACATTCCATTATACAGGTCTACCACCTCCCTCTaGCGGATCAGCGCTTTTTGCTTCACCTTGGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: RHIPLYRSTTSL*RISAFCFTLGF Trigger: GAACCCCAAGGTGAAGCAAAAAGCGCTGATCCGGCAGAGGGAGGTGGTAGACCTGTATAATGGAATGTGTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000132192.3 |
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| CDS TCA 72 bp | ACAGAACTCGCAGAGCACTGTTGGAGCGCATCTTCGTaGATGTACACTCCGCAATTTTCCCAAGATCTATGC | + |
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Preference number: 6 (lower is better) Translates to: TELAEHCWSASS*MYTPQFSQDLC Trigger: GCATAGATCTTGGGAAAATTGCGGAGTGTACATTCACGAAGATGCGCTCCAACAGTGCTCTGCGAGTTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067072.5 |
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| CDS CAA 72 bp | CATAGTTCAGCGAACTCCACGAACACTGCTTATAGTTaGGGGTCCAGGACTCCTCAAAGCTTTCCCTTAAGC | + |
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Preference number: 6 (lower is better) Translates to: HSSANSTNTAYS*GSRTPQSFPLS Trigger: GCTTAAGGGAAAGCTTTGAGGAGTCCTGGACCCCAAACTATAAGCAGTGTTCGTGGAGTTCGCTGAACTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000132192.3 |
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| CDS TCA 72 bp | GTCCAGATAGATGATGGCTTCGATGGGAAGAGGTCCTaGACATTCAGCTCCATTAAATGTAAAATACCAGCG | + |
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Preference number: 6 (lower is better) Translates to: VQIDDGFDGKRS*TFSSIKCKIPA Trigger: CGCTGGTATTTTACATTTAATGGAGCTGAATGTTCAGGACCTCTTCCCATCGAAGCCATCATCTATCTGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067072.5 ENSMUST00000226433.2 |
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