RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CTH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028179

Ensembl transcript IDs: ENSMUST00000118539.2

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGTAAACTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATaGTCCGTAATGATCTGTCCAGTTATTCCGAAGATTTGGCCCCTT +
Preference number: 1 (lower is better)
Translates to: CKLIRALKYSVQFCV*SVMICPVIPKIWPL
Trigger: AAGGGGCCAAATCTTCGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAGTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
3UTR GCA 90 bp TACAGCTGTAAACTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTaGGTATGCTCCGTAATGATCTGTCCAGTTATTCCGAAGATTTGG +
Preference number: 1 (lower is better)
Translates to: YSCKLIRALKYSVQF*VCSVMICPVIPKIW
Trigger: CCAAATCTTCGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAGTTTACAGCTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
3UTR TCA 72 bp GTTATTCCGAAGATTTGGCCCCTTGGATGCTGCTCCTaGTGGCAGCACTGGAATGACAGCTTTGACTCGAAC +
Preference number: 3 (lower is better)
Translates to: VIPKIWPLGCCS*WQHWNDSFDSN
Trigger: GTTCGAGTCAAAGCTGTCATTCCAGTGCTGCCATCAGGAGCAGCATCCAAGGGGCCAAATCTTCGGAATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
3UTR GCA 72 bp AAACTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTaGGTATGCTCCGTAATGATCTGTCCAGTTATTCCG +
Preference number: 3 (lower is better)
Translates to: KLIRALKYSVQF*VCSVMICPVIP
Trigger: CGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
3UTR GCA 72 bp ATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATaGTCCGTAATGATCTGTCCAGTTATTCCGAAGATT +
Preference number: 3 (lower is better)
Translates to: IRALKYSVQFCV*SVMICPVIPKI
Trigger: AATCTTCGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGAAACTGACCATCCCTaGGCAGCCCGAGCACTGGCG +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIETDHP*AARALA
Trigger: CGCCAGTGCTCGGGCTGCCCAGGGATGGTCAGTTTC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTGGTGGCCAACGAAATaGGCAGCACCACGGCACGAG +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIWWPTK*AAPRHE
Trigger: CTCGTGCCGTGGTGCTGCCCATTTCGTTGGCCACCA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR TCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCCCACGTGGATGGCCTaGGTGGCGAAATGCTGGAAA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIPTWMA*VAKCWK
Trigger: TTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTTGTCCCACGTGGATaGCCTGAGTGGCGAAATGCT +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMILVPRG*PEWRNA
Trigger: AGCATTTCGCCACTCAGGCCATCCACGTGGGACAAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTCAGGCACAGAGGCATaGGTCATGATTGCTGGAAGC +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMISGTEA*VMIAGS
Trigger: GCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR TCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCAGACACTAAACCCATaGCAACATCGCTGTGGCCAT +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIQTLNP*QHRCGH
Trigger: ATGGCCACAGCGATGTTGTCATGGGTTTAGTGTCTG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR GCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGCTCCTAGTGAATTCTaGAGGAAACGAAGCCGACTA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIAPSEF*RKRSRL
Trigger: TAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR GCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCATCCAACGCAGCCACTaGTTTTTCCAAGCAATTCCT +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIIQRSH*FFQAIP
Trigger: AGGAATTGCTTGGAAAAAGCAGTGGCTGCGTTGGAT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCAAGCAATTCCTTGTTaGATTTCCAGAGCGGCTGTA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIQAIPC*ISRAAV
Trigger: TACAGCCGCTCTGGAAATCCAACAAGGAATTGCTTG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCAGCCAACTTCAAAGTTaGGTTTGTGGGTGTTTCGAT +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMISQLQS*VCGCFD
Trigger: ATCGAAACACCCACAAACCCAACTTTGAAGTTGGCT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCAGAGCCAAAGGTCTCTaGAAATATGCAGACATGAAG +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIRAKGL*KYADMK
Trigger: CTTCATGTCTGCATATTTCCAGAGACCTTTGGCTCT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR TCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGGAAATATGCAGACATaGAGGTGTTATCTACAACCA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIGNMQT*RCYLQP
Trigger: TGGTTGTAGATAACACCTTCATGTCTGCATATTTCC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR GCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCAGGTCTCTGGAAATATaGAGACATGAAGGTGTTATC +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIRSLEI*RHEGVI
Trigger: GATAACACCTTCATGTCTGCATATTTCCAGAGACCT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCCTGCTTTTAAAAGATaGGTAATCGTAATGGTGGCA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIPAFKR*VIVMVA
Trigger: TGCCACCATTACGATTACCCATCTTTTAAAAGCAGG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTCAAAGTTGGGTTTGTaGGTGTTTCGATCCAAACAA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMISKLGL*VFRSKQ
Trigger: TTGTTTGGATCGAAACACCCACAAACCCAACTTTGA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR TCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTTCATCCATGCAAATaGTTTCATCTCCTGCTTTTA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMILHPCK*FHLLLL
Trigger: TAAAAGCAGGAGATGAAATCATTTGCATGGATGAAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CCA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTGCCTCTAGCAATTTaGTTTTGGAACAATCTACAA +
Preference number: 4 (lower is better)
Translates to: LIRALKYSVQFCVCSVMILPLAI*FWNNLQ
Trigger: TTGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 90 bp CTTAGCATGCTGCAGAGCACCCTTGATGTAGAAACTGACCATCCCTaGGCAGCCCGAGCACTGGCGTTTGGCCAGCTCATGCTGAGGGTG +
Preference number: 5 (lower is better)
Translates to: LSMLQSTLDVETDHP*AARALAFGQLMLRV
Trigger: CACCCTCAGCATGAGCTGGCCAAACGCCAGTGCTCGGGCTGCCCAGGGATGGTCAGTTTCTACATCAAGGGTGCTCTGCAGCATGCTAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 90 bp GAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATGGGTCATGATTaGTGGAAGCTCAGCCAGACTCTCATATCCTCCCAGGCTCTCTGC +
Preference number: 5 (lower is better)
Translates to: EGSSVLLRHRGMGHD*WKLSQTLISSQALC
Trigger: GCAGAGAGCCTGGGAGGATATGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS TCA 90 bp GCACGAGAATTCCATTGCTCAGGCTCTTGTCCCACGTGGATGGCCTaGGTGGCGAAATGCTGGAAACTAGGCAGGAAGCCGCTCAAAGAG +
Preference number: 5 (lower is better)
Translates to: AREFHCSGSCPTWMA*VAKCWKLGRKPLKE
Trigger: CTCTTTGAGCGGCTTCCTGCCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 90 bp TCATTGATCCCGAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATaGGTCATGATTGCTGGAAGCTCAGCCAGACTCTCATATCCTCCC +
Preference number: 5 (lower is better)
Translates to: SLIPRVALSFSGTEA*VMIAGSSARLSYPP
Trigger: GGGAGGATATGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTCGGGATCAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 90 bp TTCCTTGTTGGATTTCCAGAGCGGCTGTATTCAAAACCCGAGGACTaGCCCGGGAAGTCCTGCTTAAATGTGGTGGCCAACGAAATGGGC +
Preference number: 5 (lower is better)
Translates to: FLVGFPERLYSKPED*PGKSCLNVVANEMG
Trigger: GCCCATTTCGTTGGCCACCACATTTAAGCAGGACTTCCCGGGCCAGTCCTCGGGTTTTGAATACAGCCGCTCTGGAAATCCAACAAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 90 bp CGTAATGGTGGCAGCAAGACCCGATGCAAAGGCCAAACTGTGCTTTaGCCCATCCAACGCAGCCACTGCTTTTTCCAAGCAATTCCTTGT +
Preference number: 5 (lower is better)
Translates to: RNGGSKTRCKGQTVL*PIQRSHCFFQAIPC
Trigger: ACAAGGAATTGCTTGGAAAAAGCAGTGGCTGCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCATTACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 90 bp GTAATCGTAATGGTGGCAGCAAGACCCGATGCAAAGGCCAAACTGTaGTTTGCCCCATCCAACGCAGCCACTGCTTTTTCCAAGCAATTC +
Preference number: 5 (lower is better)
Translates to: VIVMVAARPDAKAKL*FAPSNAATAFSKQF
Trigger: GAATTGCTTGGAAAAAGCAGTGGCTGCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCATTACGATTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 90 bp GTGGACAATTTGTGCGCAGGCTCCAATGTCAGCCAACTTCAAAGTTaGGTTTGTGGGTGTTTCGATCCAAACAAGCTTGGTTTGTGGTGT +
Preference number: 5 (lower is better)
Translates to: VDNLCAGSNVSQLQS*VCGCFDPNKLGLWC
Trigger: ACACCACAAACCAAGCTTGTTTGGATCGAAACACCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CAA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGGCACGAGAATTCCATaGCTCAGGCTCTTGTCCCAC +
Preference number: 5 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIGTRIP*LRLLSH
Trigger: GTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CAA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTTTTCTACCCGGGGATaGGTCTCCAGGAAACGAGCC +
Preference number: 5 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIFSTRG*VSRKRA
Trigger: GGCTCGTTTCCTGGAGACCAATCCCCGGGTAGAAAA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 90 bp GTTATCTACAACCAAAATGATGTCTCCACGTTTGTGGACAATTTGTaGGCAGGCTCCAATGTCAGCCAACTTCAAAGTTGGGTTTGTGGG +
Preference number: 5 (lower is better)
Translates to: VIYNQNDVSTFVDNL*AGSNVSQLQSWVCG
Trigger: CCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCACAAACGTGGAGACATCATTTTGGTTGTAGATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CAA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCCAAGCAATTCCTTGTaGGATTTCCAGAGCGGCTGT +
Preference number: 5 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIPSNSL*DFQSGC
Trigger: ACAGCCGCTCTGGAAATCCAACAAGGAATTGCTTGG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CAA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTCCTGAAGTACCTGTaGGTGCCTCCATACACTTCA +
Preference number: 5 (lower is better)
Translates to: LIRALKYSVQFCVCSVMILLKYL*VPPYTS
Trigger: TGAAGTGTATGGAGGCACCAACAGGTACTTCAGGAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 90 bp ACACATACAAATATCAGCACCCAGAGCCAAAGGTCTCTGGAAATATaGAGACATGAAGGTGTTATCTACAACCAAAATGATGTCTCCACG +
Preference number: 5 (lower is better)
Translates to: THTNISTQSQRSLEI*RHEGVIYNQNDVST
Trigger: CGTGGAGACATCATTTTGGTTGTAGATAACACCTTCATGTCTGCATATTTCCAGAGACCTTTGGCTCTGGGTGCTGATATTTGTATGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 90 bp GTGGCAGAACACATACAAATATCAGCACCCAGAGCCAAAGGTCTCTaGAAATATGCAGACATGAAGGTGTTATCTACAACCAAAATGATG +
Preference number: 5 (lower is better)
Translates to: VAEHIQISAPRAKGL*KYADMKVLSTTKMM
Trigger: CATCATTTTGGTTGTAGATAACACCTTCATGTCTGCATATTTCCAGAGACCTTTGGCTCTGGGTGCTGATATTTGTATGTGTTCTGCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CAA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGCTGCCTCTAGCAATTaGGTTTTGGAACAATCTACA +
Preference number: 5 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIAASSN*VLEQST
Trigger: TGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAGC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CAA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCACTTCAAAGTTGGGTTaGTGGGTGTTTCGATCCAAA +
Preference number: 5 (lower is better)
Translates to: LIRALKYSVQFCVCSVMITSKLG*WVFRSK
Trigger: TTTGGATCGAAACACCCACAAACCCAACTTTGAAGT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS-3UTR CAA 90 bp CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGGCCATTCATGTATTTaGTGGCAGAACACATACAAA +
Preference number: 5 (lower is better)
Translates to: LIRALKYSVQFCVCSVMIGHSCI*WQNTYK
Trigger: TTTGTATGTGTTCTGCCACAAAATACATGAATGGCC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 72 bp CTGCAGAGCACCCTTGATGTAGAAACTGACCATCCCTaGGCAGCCCGAGCACTGGCGTTTGGCCAGCTCATG +
Preference number: 6 (lower is better)
Translates to: LQSTLDVETDHP*AARALAFGQLM
Trigger: CATGAGCTGGCCAAACGCCAGTGCTCGGGCTGCCCAGGGATGGTCAGTTTCTACATCAAGGGTGCTCTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 90 bp TGTGGTGGCCAACGAAATGGGCAGCACCACGGCACGAGAATTCCATaGCTCAGGCTCTTGTCCCACGTGGATGGCCTGAGTGGCGAAATG +
Preference number: 6 (lower is better)
Translates to: CGGQRNGQHHGTRIP*LRLLSHVDGLSGEM
Trigger: CATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCCGTGGTGCTGCCCATTTCGTTGGCCACCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 72 bp CAGCACCACGGCACGAGAATTCCATTGCTCAGGCTCTaGTCCCACGTGGATGGCCTGAGTGGCGAAATGCTG +
Preference number: 6 (lower is better)
Translates to: QHHGTRIPLLRL*SHVDGLSGEML
Trigger: CAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCCGTGGTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 90 bp CGAAATGGGCAGCACCACGGCACGAGAATTCCATTGCTCAGGCTCTaGTCCCACGTGGATGGCCTGAGTGGCGAAATGCTGGAAACTAGG +
Preference number: 6 (lower is better)
Translates to: RNGQHHGTRIPLLRL*SHVDGLSGEMLETR
Trigger: CCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCCGTGGTGCTGCCCATTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS TCA 72 bp TTCCATTGCTCAGGCTCTTGTCCCACGTGGATGGCCTaGGTGGCGAAATGCTGGAAACTAGGCAGGAAGCCG +
Preference number: 6 (lower is better)
Translates to: FHCSGSCPTWMA*VAKCWKLGRKP
Trigger: CGGCTTCCTGCCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 72 bp CCGAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATaGGTCATGATTGCTGGAAGCTCAGCCAGACTCTCA +
Preference number: 6 (lower is better)
Translates to: PRVALSFSGTEA*VMIAGSSARLS
Trigger: TGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 72 bp ATGGTGGCAGCAAGACCCGATGCAAAGGCCAAACTGTaGTTTGCCCCATCCAACGCAGCCACTGCTTTTTCC +
Preference number: 6 (lower is better)
Translates to: MVAARPDAKAKL*FAPSNAATAFS
Trigger: GGAAAAAGCAGTGGCTGCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CCA 72 bp GGATTTCCAGAGCGGCTGTATTCAAAACCCGAGGACTaGCCCGGGAAGTCCTGCTTAAATGTGGTGGCCAAC +
Preference number: 6 (lower is better)
Translates to: GFPERLYSKPED*PGKSCLNVVAN
Trigger: GTTGGCCACCACATTTAAGCAGGACTTCCCGGGCCAGTCCTCGGGTTTTGAATACAGCCGCTCTGGAAATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 72 bp TCTGTCCTTCTCAGGCACAGAGGCATGGGTCATGATTaGTGGAAGCTCAGCCAGACTCTCATATCCTCCCAG +
Preference number: 6 (lower is better)
Translates to: SVLLRHRGMGHD*WKLSQTLISSQ
Trigger: CTGGGAGGATATGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 90 bp TCCTGTTCATCCTCTAGGCCCACAGAAAGTCGTATCAGTGTGTCATaGATCCCGAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATGG +
Preference number: 6 (lower is better)
Translates to: SCSSSRPTESRISVS*IPRVALSFSGTEAW
Trigger: CCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTCGGGATCAATGACACACTGATACGACTTTCTGTGGGCCTAGAGGATGAACAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS TCA 72 bp TGGTCTCCAGGAAACGAGCCACCGCCATCCCATTCTTaGAATGTTTCTCCATCCGGACCTGCAGTGTCTTCA +
Preference number: 6 (lower is better)
Translates to: WSPGNEPPPSHS*NVSPSGPAVSS
Trigger: TGAAGACACTGCAGGTCCGGATGGAGAAACATTTCAAGAATGGGATGGCGGTGGCTCGTTTCCTGGAGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 72 bp AAGATGGGTAATCGTAATGGTGGCAGCAAGACCCGATaGAAAGGCCAAACTGTGCTTTGCCCCATCCAACGC +
Preference number: 6 (lower is better)
Translates to: KMGNRNGGSKTR*KGQTVLCPIQR
Trigger: GCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCATTACGATTACCCATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 72 bp TCCTCTAGGCCCACAGAAAGTCGTATCAGTGTGTCATaGATCCCGAGGGTAGCTCTGTCCTTCTCAGGCACA +
Preference number: 6 (lower is better)
Translates to: SSRPTESRISVS*IPRVALSFSGT
Trigger: TGTGCCTGAGAAGGACAGAGCTACCCTCGGGATCAATGACACACTGATACGACTTTCTGTGGGCCTAGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 72 bp CCCAGGCTCTCTGCCAGAGTAAACAGCTTTAGATTTTaGAGGAAGGCCTTAGCATGCTGCAGAGCACCCTTG +
Preference number: 6 (lower is better)
Translates to: PRLSARVNSFRF*RKALACCRAPL
Trigger: CAAGGGTGCTCTGCAGCATGCTAAGGCCTTCCTCAAAAATCTAAAGCTGTTTACTCTGGCAGAGAGCCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 72 bp CGCAGGCTCCAATGTCAGCCAACTTCAAAGTTGGGTTaGTGGGTGTTTCGATCCAAACAAGCTTGGTTTGTG +
Preference number: 6 (lower is better)
Translates to: RRLQCQPTSKLG*WVFRSKQAWFV
Trigger: CACAAACCAAGCTTGTTTGGATCGAAACACCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 90 bp TGTGGACAATTTGTGCGCAGGCTCCAATGTCAGCCAACTTCAAAGTaGGGTTTGTGGGTGTTTCGATCCAAACAAGCTTGGTTTGTGGTG +
Preference number: 6 (lower is better)
Translates to: CGQFVRRLQCQPTSK*GLWVFRSKQAWFVV
Trigger: CACCACAAACCAAGCTTGTTTGGATCGAAACACCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS TCA 72 bp AAGAAATCTTCAGTCCAAATTCAGATGCCACCCTCCTaGAGTACCTGTTGGTGCCTCCATACACTTCATCCA +
Preference number: 6 (lower is better)
Translates to: KKSSVQIQMPPS*STCWCLHTLHP
Trigger: TGGATGAAGTGTATGGAGGCACCAACAGGTACTTCAGGAGGGTGGCATCTGAATTTGGACTGAAGATTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 90 bp GAAGGAACTGCTCCTAGTGAATTCTGCAGGAAACGAAGCCGACTATaGAGGTCATCAGAATTAACAGACACTAAACCCATGACAACATCG +
Preference number: 6 (lower is better)
Translates to: EGTAPSEFCRKRSRL*RSSELTDTKPMTTS
Trigger: CGATGTTGTCATGGGTTTAGTGTCTGTTAATTCTGATGACCTCAATAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGCAGTTCCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS GCA 72 bp CAATCAAAAGGAGAAGGAACTGCTCCTAGTGAATTCTaGAGGAAACGAAGCCGACTATTGAGGTCATCAGAA +
Preference number: 6 (lower is better)
Translates to: QSKGEGTAPSEF*RKRSRLLRSSE
Trigger: TTCTGATGACCTCAATAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGCAGTTCCTTCTCCTTTTGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 72 bp TACAACCAAAATGATGTCTCCACGTTTGTGGACAATTaGTGCGCAGGCTCCAATGTCAGCCAACTTCAAAGT +
Preference number: 6 (lower is better)
Translates to: YNQNDVSTFVDN*CAGSNVSQLQS
Trigger: ACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCACAAACGTGGAGACATCATTTTGGTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 72 bp GCTCCTAGTGAATTCTGCAGGAAACGAAGCCGACTATaGAGGTCATCAGAATTAACAGACACTAAACCCATG +
Preference number: 6 (lower is better)
Translates to: APSEFCRKRSRL*RSSELTDTKPM
Trigger: CATGGGTTTAGTGTCTGTTAATTCTGATGACCTCAATAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 90 bp ACAAGCTTGGTTTGTGGTGTAATCGCTGCCTCTAGCAATTTGGTTTaGGAACAATCTACAAAAGAAATCTTCAGTCCAAATTCAGATGCC +
Preference number: 6 (lower is better)
Translates to: TSLVCGVIAASSNLV*EQSTKEIFSPNSDA
Trigger: GGCATCTGAATTTGGACTGAAGATTTCTTTTGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAGCGATTACACCACAAACCAAGCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2
CDS CAA 72 bp GTTTGTGGTGTAATCGCTGCCTCTAGCAATTTGGTTTaGGAACAATCTACAAAAGAAATCTTCAGTCCAAAT +
Preference number: 6 (lower is better)
Translates to: VCGVIAASSNLV*EQSTKEIFSPN
Trigger: ATTTGGACTGAAGATTTCTTTTGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAGCGATTACACCACAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118539.2