Pregenerated sensors for CTH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028179Ensembl transcript IDs: ENSMUST00000118539.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | TGTAAACTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATaGTCCGTAATGATCTGTCCAGTTATTCCGAAGATTTGGCCCCTT | + |
Preference number: 1 (lower is better) Translates to: CKLIRALKYSVQFCV*SVMICPVIPKIWPL Trigger: AAGGGGCCAAATCTTCGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAGTTTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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3UTR GCA 90 bp | TACAGCTGTAAACTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTaGGTATGCTCCGTAATGATCTGTCCAGTTATTCCGAAGATTTGG | + |
Preference number: 1 (lower is better) Translates to: YSCKLIRALKYSVQF*VCSVMICPVIPKIW Trigger: CCAAATCTTCGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAGTTTACAGCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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3UTR TCA 72 bp | GTTATTCCGAAGATTTGGCCCCTTGGATGCTGCTCCTaGTGGCAGCACTGGAATGACAGCTTTGACTCGAAC | + |
Preference number: 3 (lower is better) Translates to: VIPKIWPLGCCS*WQHWNDSFDSN Trigger: GTTCGAGTCAAAGCTGTCATTCCAGTGCTGCCATCAGGAGCAGCATCCAAGGGGCCAAATCTTCGGAATAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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3UTR GCA 72 bp | AAACTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTaGGTATGCTCCGTAATGATCTGTCCAGTTATTCCG | + |
Preference number: 3 (lower is better) Translates to: KLIRALKYSVQF*VCSVMICPVIP Trigger: CGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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3UTR GCA 72 bp | ATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATaGTCCGTAATGATCTGTCCAGTTATTCCGAAGATT | + |
Preference number: 3 (lower is better) Translates to: IRALKYSVQFCV*SVMICPVIPKI Trigger: AATCTTCGGAATAACTGGACAGATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGAAACTGACCATCCCTaGGCAGCCCGAGCACTGGCG | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIETDHP*AARALA Trigger: CGCCAGTGCTCGGGCTGCCCAGGGATGGTCAGTTTC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTGGTGGCCAACGAAATaGGCAGCACCACGGCACGAG | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIWWPTK*AAPRHE Trigger: CTCGTGCCGTGGTGCTGCCCATTTCGTTGGCCACCA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR TCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCCCACGTGGATGGCCTaGGTGGCGAAATGCTGGAAA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIPTWMA*VAKCWK Trigger: TTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTTGTCCCACGTGGATaGCCTGAGTGGCGAAATGCT | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMILVPRG*PEWRNA Trigger: AGCATTTCGCCACTCAGGCCATCCACGTGGGACAAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTCAGGCACAGAGGCATaGGTCATGATTGCTGGAAGC | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMISGTEA*VMIAGS Trigger: GCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR TCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCAGACACTAAACCCATaGCAACATCGCTGTGGCCAT | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIQTLNP*QHRCGH Trigger: ATGGCCACAGCGATGTTGTCATGGGTTTAGTGTCTG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR GCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGCTCCTAGTGAATTCTaGAGGAAACGAAGCCGACTA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIAPSEF*RKRSRL Trigger: TAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR GCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCATCCAACGCAGCCACTaGTTTTTCCAAGCAATTCCT | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIIQRSH*FFQAIP Trigger: AGGAATTGCTTGGAAAAAGCAGTGGCTGCGTTGGAT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCAAGCAATTCCTTGTTaGATTTCCAGAGCGGCTGTA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIQAIPC*ISRAAV Trigger: TACAGCCGCTCTGGAAATCCAACAAGGAATTGCTTG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCAGCCAACTTCAAAGTTaGGTTTGTGGGTGTTTCGAT | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMISQLQS*VCGCFD Trigger: ATCGAAACACCCACAAACCCAACTTTGAAGTTGGCT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCAGAGCCAAAGGTCTCTaGAAATATGCAGACATGAAG | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIRAKGL*KYADMK Trigger: CTTCATGTCTGCATATTTCCAGAGACCTTTGGCTCT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR TCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGGAAATATGCAGACATaGAGGTGTTATCTACAACCA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIGNMQT*RCYLQP Trigger: TGGTTGTAGATAACACCTTCATGTCTGCATATTTCC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR GCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCAGGTCTCTGGAAATATaGAGACATGAAGGTGTTATC | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIRSLEI*RHEGVI Trigger: GATAACACCTTCATGTCTGCATATTTCCAGAGACCT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCCTGCTTTTAAAAGATaGGTAATCGTAATGGTGGCA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMIPAFKR*VIVMVA Trigger: TGCCACCATTACGATTACCCATCTTTTAAAAGCAGG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTCAAAGTTGGGTTTGTaGGTGTTTCGATCCAAACAA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMISKLGL*VFRSKQ Trigger: TTGTTTGGATCGAAACACCCACAAACCCAACTTTGA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR TCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTTCATCCATGCAAATaGTTTCATCTCCTGCTTTTA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMILHPCK*FHLLLL Trigger: TAAAAGCAGGAGATGAAATCATTTGCATGGATGAAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CCA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTGCCTCTAGCAATTTaGTTTTGGAACAATCTACAA | + |
Preference number: 4 (lower is better) Translates to: LIRALKYSVQFCVCSVMILPLAI*FWNNLQ Trigger: TTGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 90 bp | CTTAGCATGCTGCAGAGCACCCTTGATGTAGAAACTGACCATCCCTaGGCAGCCCGAGCACTGGCGTTTGGCCAGCTCATGCTGAGGGTG | + |
Preference number: 5 (lower is better) Translates to: LSMLQSTLDVETDHP*AARALAFGQLMLRV Trigger: CACCCTCAGCATGAGCTGGCCAAACGCCAGTGCTCGGGCTGCCCAGGGATGGTCAGTTTCTACATCAAGGGTGCTCTGCAGCATGCTAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 90 bp | GAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATGGGTCATGATTaGTGGAAGCTCAGCCAGACTCTCATATCCTCCCAGGCTCTCTGC | + |
Preference number: 5 (lower is better) Translates to: EGSSVLLRHRGMGHD*WKLSQTLISSQALC Trigger: GCAGAGAGCCTGGGAGGATATGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS TCA 90 bp | GCACGAGAATTCCATTGCTCAGGCTCTTGTCCCACGTGGATGGCCTaGGTGGCGAAATGCTGGAAACTAGGCAGGAAGCCGCTCAAAGAG | + |
Preference number: 5 (lower is better) Translates to: AREFHCSGSCPTWMA*VAKCWKLGRKPLKE Trigger: CTCTTTGAGCGGCTTCCTGCCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 90 bp | TCATTGATCCCGAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATaGGTCATGATTGCTGGAAGCTCAGCCAGACTCTCATATCCTCCC | + |
Preference number: 5 (lower is better) Translates to: SLIPRVALSFSGTEA*VMIAGSSARLSYPP Trigger: GGGAGGATATGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTCGGGATCAATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 90 bp | TTCCTTGTTGGATTTCCAGAGCGGCTGTATTCAAAACCCGAGGACTaGCCCGGGAAGTCCTGCTTAAATGTGGTGGCCAACGAAATGGGC | + |
Preference number: 5 (lower is better) Translates to: FLVGFPERLYSKPED*PGKSCLNVVANEMG Trigger: GCCCATTTCGTTGGCCACCACATTTAAGCAGGACTTCCCGGGCCAGTCCTCGGGTTTTGAATACAGCCGCTCTGGAAATCCAACAAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 90 bp | CGTAATGGTGGCAGCAAGACCCGATGCAAAGGCCAAACTGTGCTTTaGCCCATCCAACGCAGCCACTGCTTTTTCCAAGCAATTCCTTGT | + |
Preference number: 5 (lower is better) Translates to: RNGGSKTRCKGQTVL*PIQRSHCFFQAIPC Trigger: ACAAGGAATTGCTTGGAAAAAGCAGTGGCTGCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCATTACG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 90 bp | GTAATCGTAATGGTGGCAGCAAGACCCGATGCAAAGGCCAAACTGTaGTTTGCCCCATCCAACGCAGCCACTGCTTTTTCCAAGCAATTC | + |
Preference number: 5 (lower is better) Translates to: VIVMVAARPDAKAKL*FAPSNAATAFSKQF Trigger: GAATTGCTTGGAAAAAGCAGTGGCTGCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCATTACGATTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 90 bp | GTGGACAATTTGTGCGCAGGCTCCAATGTCAGCCAACTTCAAAGTTaGGTTTGTGGGTGTTTCGATCCAAACAAGCTTGGTTTGTGGTGT | + |
Preference number: 5 (lower is better) Translates to: VDNLCAGSNVSQLQS*VCGCFDPNKLGLWC Trigger: ACACCACAAACCAAGCTTGTTTGGATCGAAACACCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CAA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGGCACGAGAATTCCATaGCTCAGGCTCTTGTCCCAC | + |
Preference number: 5 (lower is better) Translates to: LIRALKYSVQFCVCSVMIGTRIP*LRLLSH Trigger: GTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CAA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCTTTTCTACCCGGGGATaGGTCTCCAGGAAACGAGCC | + |
Preference number: 5 (lower is better) Translates to: LIRALKYSVQFCVCSVMIFSTRG*VSRKRA Trigger: GGCTCGTTTCCTGGAGACCAATCCCCGGGTAGAAAA...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 90 bp | GTTATCTACAACCAAAATGATGTCTCCACGTTTGTGGACAATTTGTaGGCAGGCTCCAATGTCAGCCAACTTCAAAGTTGGGTTTGTGGG | + |
Preference number: 5 (lower is better) Translates to: VIYNQNDVSTFVDNL*AGSNVSQLQSWVCG Trigger: CCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCACAAACGTGGAGACATCATTTTGGTTGTAGATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CAA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCCAAGCAATTCCTTGTaGGATTTCCAGAGCGGCTGT | + |
Preference number: 5 (lower is better) Translates to: LIRALKYSVQFCVCSVMIPSNSL*DFQSGC Trigger: ACAGCCGCTCTGGAAATCCAACAAGGAATTGCTTGG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CAA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCCTCCTGAAGTACCTGTaGGTGCCTCCATACACTTCA | + |
Preference number: 5 (lower is better) Translates to: LIRALKYSVQFCVCSVMILLKYL*VPPYTS Trigger: TGAAGTGTATGGAGGCACCAACAGGTACTTCAGGAG...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 90 bp | ACACATACAAATATCAGCACCCAGAGCCAAAGGTCTCTGGAAATATaGAGACATGAAGGTGTTATCTACAACCAAAATGATGTCTCCACG | + |
Preference number: 5 (lower is better) Translates to: THTNISTQSQRSLEI*RHEGVIYNQNDVST Trigger: CGTGGAGACATCATTTTGGTTGTAGATAACACCTTCATGTCTGCATATTTCCAGAGACCTTTGGCTCTGGGTGCTGATATTTGTATGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 90 bp | GTGGCAGAACACATACAAATATCAGCACCCAGAGCCAAAGGTCTCTaGAAATATGCAGACATGAAGGTGTTATCTACAACCAAAATGATG | + |
Preference number: 5 (lower is better) Translates to: VAEHIQISAPRAKGL*KYADMKVLSTTKMM Trigger: CATCATTTTGGTTGTAGATAACACCTTCATGTCTGCATATTTCCAGAGACCTTTGGCTCTGGGTGCTGATATTTGTATGTGTTCTGCCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CAA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGCTGCCTCTAGCAATTaGGTTTTGGAACAATCTACA | + |
Preference number: 5 (lower is better) Translates to: LIRALKYSVQFCVCSVMIAASSN*VLEQST Trigger: TGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAGC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CAA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCACTTCAAAGTTGGGTTaGTGGGTGTTTCGATCCAAA | + |
Preference number: 5 (lower is better) Translates to: LIRALKYSVQFCVCSVMITSKLG*WVFRSK Trigger: TTTGGATCGAAACACCCACAAACCCAACTTTGAAGT...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS-3UTR CAA 90 bp | CTCATTAGGGCCTTAAAATATTCAGTGCAGTTCTGCGTATGCTCCGTAATGATCGGCCATTCATGTATTTaGTGGCAGAACACATACAAA | + |
Preference number: 5 (lower is better) Translates to: LIRALKYSVQFCVCSVMIGHSCI*WQNTYK Trigger: TTTGTATGTGTTCTGCCACAAAATACATGAATGGCC...GATCATTACGGAGCATACGCAGAACTGCACTGAATATTTTAAGGCCCTAATGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 72 bp | CTGCAGAGCACCCTTGATGTAGAAACTGACCATCCCTaGGCAGCCCGAGCACTGGCGTTTGGCCAGCTCATG | + |
Preference number: 6 (lower is better) Translates to: LQSTLDVETDHP*AARALAFGQLM Trigger: CATGAGCTGGCCAAACGCCAGTGCTCGGGCTGCCCAGGGATGGTCAGTTTCTACATCAAGGGTGCTCTGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 90 bp | TGTGGTGGCCAACGAAATGGGCAGCACCACGGCACGAGAATTCCATaGCTCAGGCTCTTGTCCCACGTGGATGGCCTGAGTGGCGAAATG | + |
Preference number: 6 (lower is better) Translates to: CGGQRNGQHHGTRIP*LRLLSHVDGLSGEM Trigger: CATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCCGTGGTGCTGCCCATTTCGTTGGCCACCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 72 bp | CAGCACCACGGCACGAGAATTCCATTGCTCAGGCTCTaGTCCCACGTGGATGGCCTGAGTGGCGAAATGCTG | + |
Preference number: 6 (lower is better) Translates to: QHHGTRIPLLRL*SHVDGLSGEML Trigger: CAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCCGTGGTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 90 bp | CGAAATGGGCAGCACCACGGCACGAGAATTCCATTGCTCAGGCTCTaGTCCCACGTGGATGGCCTGAGTGGCGAAATGCTGGAAACTAGG | + |
Preference number: 6 (lower is better) Translates to: RNGQHHGTRIPLLRL*SHVDGLSGEMLETR Trigger: CCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCCGTGGTGCTGCCCATTTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS TCA 72 bp | TTCCATTGCTCAGGCTCTTGTCCCACGTGGATGGCCTaGGTGGCGAAATGCTGGAAACTAGGCAGGAAGCCG | + |
Preference number: 6 (lower is better) Translates to: FHCSGSCPTWMA*VAKCWKLGRKP Trigger: CGGCTTCCTGCCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACGTGGGACAAGAGCCTGAGCAATGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 72 bp | CCGAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATaGGTCATGATTGCTGGAAGCTCAGCCAGACTCTCA | + |
Preference number: 6 (lower is better) Translates to: PRVALSFSGTEA*VMIAGSSARLS Trigger: TGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 72 bp | ATGGTGGCAGCAAGACCCGATGCAAAGGCCAAACTGTaGTTTGCCCCATCCAACGCAGCCACTGCTTTTTCC | + |
Preference number: 6 (lower is better) Translates to: MVAARPDAKAKL*FAPSNAATAFS Trigger: GGAAAAAGCAGTGGCTGCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CCA 72 bp | GGATTTCCAGAGCGGCTGTATTCAAAACCCGAGGACTaGCCCGGGAAGTCCTGCTTAAATGTGGTGGCCAAC | + |
Preference number: 6 (lower is better) Translates to: GFPERLYSKPED*PGKSCLNVVAN Trigger: GTTGGCCACCACATTTAAGCAGGACTTCCCGGGCCAGTCCTCGGGTTTTGAATACAGCCGCTCTGGAAATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 72 bp | TCTGTCCTTCTCAGGCACAGAGGCATGGGTCATGATTaGTGGAAGCTCAGCCAGACTCTCATATCCTCCCAG | + |
Preference number: 6 (lower is better) Translates to: SVLLRHRGMGHD*WKLSQTLISSQ Trigger: CTGGGAGGATATGAGAGTCTGGCTGAGCTTCCAGCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 90 bp | TCCTGTTCATCCTCTAGGCCCACAGAAAGTCGTATCAGTGTGTCATaGATCCCGAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATGG | + |
Preference number: 6 (lower is better) Translates to: SCSSSRPTESRISVS*IPRVALSFSGTEAW Trigger: CCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTCGGGATCAATGACACACTGATACGACTTTCTGTGGGCCTAGAGGATGAACAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS TCA 72 bp | TGGTCTCCAGGAAACGAGCCACCGCCATCCCATTCTTaGAATGTTTCTCCATCCGGACCTGCAGTGTCTTCA | + |
Preference number: 6 (lower is better) Translates to: WSPGNEPPPSHS*NVSPSGPAVSS Trigger: TGAAGACACTGCAGGTCCGGATGGAGAAACATTTCAAGAATGGGATGGCGGTGGCTCGTTTCCTGGAGACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 72 bp | AAGATGGGTAATCGTAATGGTGGCAGCAAGACCCGATaGAAAGGCCAAACTGTGCTTTGCCCCATCCAACGC | + |
Preference number: 6 (lower is better) Translates to: KMGNRNGGSKTR*KGQTVLCPIQR Trigger: GCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCATTACGATTACCCATCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 72 bp | TCCTCTAGGCCCACAGAAAGTCGTATCAGTGTGTCATaGATCCCGAGGGTAGCTCTGTCCTTCTCAGGCACA | + |
Preference number: 6 (lower is better) Translates to: SSRPTESRISVS*IPRVALSFSGT Trigger: TGTGCCTGAGAAGGACAGAGCTACCCTCGGGATCAATGACACACTGATACGACTTTCTGTGGGCCTAGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 72 bp | CCCAGGCTCTCTGCCAGAGTAAACAGCTTTAGATTTTaGAGGAAGGCCTTAGCATGCTGCAGAGCACCCTTG | + |
Preference number: 6 (lower is better) Translates to: PRLSARVNSFRF*RKALACCRAPL Trigger: CAAGGGTGCTCTGCAGCATGCTAAGGCCTTCCTCAAAAATCTAAAGCTGTTTACTCTGGCAGAGAGCCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 72 bp | CGCAGGCTCCAATGTCAGCCAACTTCAAAGTTGGGTTaGTGGGTGTTTCGATCCAAACAAGCTTGGTTTGTG | + |
Preference number: 6 (lower is better) Translates to: RRLQCQPTSKLG*WVFRSKQAWFV Trigger: CACAAACCAAGCTTGTTTGGATCGAAACACCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 90 bp | TGTGGACAATTTGTGCGCAGGCTCCAATGTCAGCCAACTTCAAAGTaGGGTTTGTGGGTGTTTCGATCCAAACAAGCTTGGTTTGTGGTG | + |
Preference number: 6 (lower is better) Translates to: CGQFVRRLQCQPTSK*GLWVFRSKQAWFVV Trigger: CACCACAAACCAAGCTTGTTTGGATCGAAACACCCACAAACCCAACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS TCA 72 bp | AAGAAATCTTCAGTCCAAATTCAGATGCCACCCTCCTaGAGTACCTGTTGGTGCCTCCATACACTTCATCCA | + |
Preference number: 6 (lower is better) Translates to: KKSSVQIQMPPS*STCWCLHTLHP Trigger: TGGATGAAGTGTATGGAGGCACCAACAGGTACTTCAGGAGGGTGGCATCTGAATTTGGACTGAAGATTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 90 bp | GAAGGAACTGCTCCTAGTGAATTCTGCAGGAAACGAAGCCGACTATaGAGGTCATCAGAATTAACAGACACTAAACCCATGACAACATCG | + |
Preference number: 6 (lower is better) Translates to: EGTAPSEFCRKRSRL*RSSELTDTKPMTTS Trigger: CGATGTTGTCATGGGTTTAGTGTCTGTTAATTCTGATGACCTCAATAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGCAGTTCCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS GCA 72 bp | CAATCAAAAGGAGAAGGAACTGCTCCTAGTGAATTCTaGAGGAAACGAAGCCGACTATTGAGGTCATCAGAA | + |
Preference number: 6 (lower is better) Translates to: QSKGEGTAPSEF*RKRSRLLRSSE Trigger: TTCTGATGACCTCAATAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGCAGTTCCTTCTCCTTTTGATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 72 bp | TACAACCAAAATGATGTCTCCACGTTTGTGGACAATTaGTGCGCAGGCTCCAATGTCAGCCAACTTCAAAGT | + |
Preference number: 6 (lower is better) Translates to: YNQNDVSTFVDN*CAGSNVSQLQS Trigger: ACTTTGAAGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCACAAACGTGGAGACATCATTTTGGTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 72 bp | GCTCCTAGTGAATTCTGCAGGAAACGAAGCCGACTATaGAGGTCATCAGAATTAACAGACACTAAACCCATG | + |
Preference number: 6 (lower is better) Translates to: APSEFCRKRSRL*RSSELTDTKPM Trigger: CATGGGTTTAGTGTCTGTTAATTCTGATGACCTCAATAGTCGGCTTCGTTTCCTGCAGAATTCACTAGGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 90 bp | ACAAGCTTGGTTTGTGGTGTAATCGCTGCCTCTAGCAATTTGGTTTaGGAACAATCTACAAAAGAAATCTTCAGTCCAAATTCAGATGCC | + |
Preference number: 6 (lower is better) Translates to: TSLVCGVIAASSNLV*EQSTKEIFSPNSDA Trigger: GGCATCTGAATTTGGACTGAAGATTTCTTTTGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAGCGATTACACCACAAACCAAGCTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |
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CDS CAA 72 bp | GTTTGTGGTGTAATCGCTGCCTCTAGCAATTTGGTTTaGGAACAATCTACAAAAGAAATCTTCAGTCCAAAT | + |
Preference number: 6 (lower is better) Translates to: VCGVIAASSNLV*EQSTKEIFSPN Trigger: ATTTGGACTGAAGATTTCTTTTGTAGATTGTTCCAAAACCAAATTGCTAGAGGCAGCGATTACACCACAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118539.2 |