Pregenerated sensors for CTF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060034Ensembl transcript IDs: ENSMUST00000076091.4, ENSMUST00000206038.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGACTTCCTCAAATACAAGAAAAAGGACACCAGGACAGGGCTGGTaGGATGGCTCAGCGGGTAAGAGCACTGACTGTTCTTCCGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: WTSSNTRKRTPGQGW*DGSAGKSTDCSSEG Trigger: ACCTTCGGAAGAACAGTCAGTGCTCTTACCCGCTGAGCCATCTCACCAGCCCTGTCCTGGTGTCCTTTTTCTTGTATTTGAGGAAGTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR CCA 90 bp | TCTTCACCCAGGAATCGAGGTAGACAGAGACATGAAGCAAGACCCTaGACTTCCTCAAATACAAGAAAAAGGACACCAGGACAGGGCTGG | + |
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Preference number: 1 (lower is better) Translates to: SSPRNRGRQRHEARP*TSSNTRKRTPGQGW Trigger: CCAGCCCTGTCCTGGTGTCCTTTTTCTTGTATTTGAGGAAGTCCAGGGTCTTGCTTCATGTCTCTGTCTACCTCGATTCCTGGGTGAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR-3UTR GCA 90 bp | GTCCTGGTGGCTGTGACGTGCACTGGGCTGTCAACACTGGAGAGCTCAATAGAAGGGATTAAAGGCGTGTaGCACCACCACCCGGCAATA | + |
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Preference number: 2 (lower is better) Translates to: VLVAVTCTGLSTLESSIEGIKGV*HHHPAI Trigger: TATTGCCGGGTGGTGGTGGCACACGCCTTTAATCCC...TTCTATTGAGCTCTCCAGTGTTGACAGCCCAGTGCACGTCACAGCCACCAGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR-3UTR CCA 90 bp | AGATCTTCACCCAGGAATCGAGGTAGACAGAGACATGAAGCAAGACCCTGGACTCCTCTCCCCCATTTCTaGAAAGGAGTCTGTAGGACC | + |
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Preference number: 2 (lower is better) Translates to: RSSPRNRGRQRHEARPWTPLPHF*KGVCRT Trigger: GGTCCTACAGACTCCTTTCCAGAAATGGGGGAGAGG...AGTCCAGGGTCTTGCTTCATGTCTCTGTCTACCTCGATTCCTGGGTGAAGATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCCCTCTCCCCCATTTCTaGAAAGGAGTCTGTAGGACC | + |
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Preference number: 2 (lower is better) Translates to: CGESDLRRIGFLESTRFPPLPHF*KGVCRT Trigger: GGTCCTACAGACTCCTTTCCAGAAATGGGGGAGAGG...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 51% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR-3UTR CCA 90 bp | AGATCTTCACCCAGGAATCGAGGTAGACAGAGACATGAAGCAAGACCCTGGACTCCAGCAACCACACGGTaGCTCACAACCATCTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: RSSPRNRGRQRHEARPWTPATTR*LTTICS Trigger: ACTACAGATGGTTGTGAGCCACCGTGTGGTTGCTGG...AGTCCAGGGTCTTGCTTCATGTCTCTGTCTACCTCGATTCCTGGGTGAAGATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR-3UTR TCA 90 bp | AACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCACCCAGGAATTTCTTCCGAAGGTCCTaGGTTCAAATCCCAGCAACC | + |
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Preference number: 2 (lower is better) Translates to: NSSEKKPVFRKARSSPRNFFRRS*VQIPAT Trigger: GGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAA...ATTCCTGGGTGAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR TCA 72 bp | AGCAGGAAAGAGCTGCAACATGAGTCCTGGTGGCTGTaGCGTGCACTGGGCTGTCAACACTGGAGAGCTCAA | + |
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Preference number: 3 (lower is better) Translates to: SRKELQHESWWL*RALGCQHWRAQ Trigger: TTGAGCTCTCCAGTGTTGACAGCCCAGTGCACGTCACAGCCACCAGGACTCATGTTGCAGCTCTTTCCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR CCA 72 bp | GGCCAGGGATCCCAGCTGTCAGTTCTGAACCCAAAGTaGGTCTCCCTAGCAGGAAAGAGCTGCAACATGAGT | + |
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Preference number: 3 (lower is better) Translates to: GQGSQLSVLNPK*VSLAGKSCNMS Trigger: ACTCATGTTGCAGCTCTTTCCTGCTAGGGAGACCCACTTTGGGTTCAGAACTGACAGCTGGGATCCCTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR-3UTR CAA 90 bp | AGTCCTGGTGGCTGTGACGTGCACTGGGCTGTCAACACTGGAGAGCTCAATAGACTGAAAGAGAAATTCTaGGGACTTCTGATAGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: SPGGCDVHWAVNTGELNRLKEKF*GLLIEG Trigger: GCCTTCTATCAGAAGTCCCAAGAATTTCTCTTTCAG...TCTATTGAGCTCTCCAGTGTTGACAGCCCAGTGCACGTCACAGCCACCAGGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR TCA 72 bp | TCAAATACAAGAAAAAGGACACCAGGACAGGGCTGGTaGGATGGCTCAGCGGGTAAGAGCACTGACTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: SNTRKRTPGQGW*DGSAGKSTDCS Trigger: AGAACAGTCAGTGCTCTTACCCGCTGAGCCATCTCACCAGCCCTGTCCTGGTGTCCTTTTTCTTGTATTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR-3UTR CAA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCCTGAAAGAGAAATTCTaGGGACTTCTGATAGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: CGESDLRRIGFLESTRFPLKEKF*GLLIEG Trigger: GCCTTCTATCAGAAGTCCCAAGAATTTCTCTTTCAG...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR TCA 72 bp | GCTGTCAACACTGGAGAGCTCAATAGAAACCATCAATaGGGAGGTAGACCAAGGAAAGGAACTCCAGCGAAA | + |
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Preference number: 3 (lower is better) Translates to: AVNTGELNRNHQ*GGRPRKGTPAK Trigger: TTTCGCTGGAGTTCCTTTCCTTGGTCTACCTCCTCATTGATGGTTTCTATTGAGCTCTCCAGTGTTGACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| 3UTR CCA 72 bp | AGGAATCGAGGTAGACAGAGACATGAAGCAAGACCCTaGACTTCCTCAAATACAAGAAAAAGGACACCAGGA | + |
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Preference number: 3 (lower is better) Translates to: RNRGRQRHEARP*TSSNTRKRTPG Trigger: TCCTGGTGTCCTTTTTCTTGTATTTGAGGAAGTCCAGGGTCTTGCTTCATGTCTCTGTCTACCTCGATTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CCA 90 bp | GTCCTGGTGGCTGTGACGTGCACTGGGCTGTCAACACTGGAGAGCTCAATAGAATCGTCCCCCACGAGCTaGAGGTGCTGGGTCAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: VLVAVTCTGLSTLESSIESSPTS*RCWVKA Trigger: GGCCTTGACCCAGCACCTCCAGCTCGTGGGGGACGA...TTCTATTGAGCTCTCCAGTGTTGACAGCCCAGTGCACGTCACAGCCACCAGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCTGGGGGCCGCAGGACTaGGGGGTGGCAACAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: CGESDLRRIGFLESTRFPWGPQD*GVATAG Trigger: GCCTGCTGTTGCCACCCCTCAGTCCTGCGGCCCCCA...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt. Matches the following 1 transcripts: ENSMUST00000076091.4 |
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| CDS-3UTR CCA 90 bp | ACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTCACTCGTCCCCCACGAGCTaGAGGTGCTGGGTCAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TVLPKVLSSNPSNHTVAHSSPTS*RCWVKA Trigger: GGCCTTGACCCAGCACCTCCAGCTCGTGGGGGACGA...GTGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | GTCCTGGTGGCTGTGACGTGCACTGGGCTGTCAACACTGGAGAGCTCAATAGAACTGGAGCTCAGGAGCTaGGAAGCCGGGGTCACTGAA | + |
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Preference number: 4 (lower is better) Translates to: VLVAVTCTGLSTLESSIELELRS*EAGVTE Trigger: TTCAGTGACCCCGGCTTCTCAGCTCCTGAGCTCCAG...TTCTATTGAGCTCTCCAGTGTTGACAGCCCAGTGCACGTCACAGCCACCAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CCA 90 bp | ACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTCACGGCAGGGTGCTGAGCTaGAGCTCAGGAGCTGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: TVLPKVLSSNPSNHTVAHGRVLS*SSGAEK Trigger: CTTCTCAGCTCCTGAGCTCCAGCTCAGCACCCTGCC...GTGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | CTGACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTGCCCGGTCTGTCCAGTaGCCATATTCTCGGGTCACT | + |
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Preference number: 4 (lower is better) Translates to: LTVLPKVLSSNPSNHTVAARSVQ*PYSRVT Trigger: AGTGACCCGAGAATATGGTCACTGGACAGACCGGGC...AGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CCA 90 bp | CTGACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTCCTCTTCTGGAGGGATaGGCAGCCCTAGAGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: LTVLPKVLSSNPSNHTVAPLLEG*AALEQS Trigger: TGACTGCTCTAGGGCTGCCCATCCCTCCAGAAGAGG...AGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | CAAGGAAAGGAACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCTTGACCGATGGGCTCTaGTGGGGAGATGGGGGCCGC | + |
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Preference number: 4 (lower is better) Translates to: QGKELQRKETCVQKGQIFLTDGL*WGDGGR Trigger: GCGGCCCCCATCTCCCCATCAGAGCCCATCGGTCAA...GAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTTCCTTTCCTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076091.4 |
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| CDS-3UTR TCA 90 bp | CTGACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTTGGCATGCCAGGTCTTaGAGGAGACAGCTGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: LTVLPKVLSSNPSNHTVAWHARS*RRQLQK Trigger: CTTCTGCAGCTGTCTCCTTCAAGACCTGGCATGCCA...AGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCAGAGGCCTTGGGCCCTaGGTCTTGCTGCTCCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: CGESDLRRIGFLESTRFPRGLGP*VLLLLA Trigger: AGCTAGGAGCAGCAAGACTCAGGGCCCAAGGCCTCT...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR GCA 90 bp | TCTGGAAAGGAGTCTGTAGGACCTGGCAGGAAGATCCAGACAATAAGGAGTAGACCCACGAGCTGGAGGTaGTGGGTCAAGGCCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: SGKESVGPGRKIQTIRSRPTSWR*WVKARK Trigger: CTTCCTGGCCTTGACCCAGCACCTCCAGCTCGTGGG...TCTACTCCTTATTGTCTGGATCTTCCTGCCAGGTCCTACAGACTCCTTTCCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR GCA 90 bp | AGTCCTGGTGGCTGTGACGTGCACTGGGCTGTCAACACTGGAGAGCTCAATAGAGCATCTTCCATGGCATaGCAGGTCTTGAAGGAGACA | + |
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Preference number: 4 (lower is better) Translates to: SPGGCDVHWAVNTGELNRASSMA*QVLKET Trigger: TGTCTCCTTCAAGACCTGGCATGCCATGGAAGATGC...TCTATTGAGCTCTCCAGTGTTGACAGCCCAGTGCACGTCACAGCCACCAGGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR GCA 90 bp | AACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCACCCAGGAATCCCACGAGCTGGAGGTaGTGGGTCAAGGCCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: NSSEKKPVFRKARSSPRNPTSWR*WVKARK Trigger: CTTCCTGGCCTTGACCCAGCACCTCCAGCTCGTGGG...ATTCCTGGGTGAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CCA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCCTTGCTGCTCCTAGCTaGGCCAGCAGGATAGGACTG | + |
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Preference number: 4 (lower is better) Translates to: CGESDLRRIGFLESTRFPLAAPS*ASRIGL Trigger: CAGTCCTATCCTGCTGGCCCAGCTAGGAGCAGCAAG...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CCA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCCCTCTTCTGGAGGGATaGGCAGCCCTAGAGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: CGESDLRRIGFLESTRFPPLLEG*AALEQS Trigger: TGACTGCTCTAGGGCTGCCCATCCCTCCAGAAGAGG...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 53% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | CCATCAAATAGATCCAGAATACCCCTCTCCCCCATTTCTGGAAAGGAGTCTGTACTGGAGCTCAGGAGCTaGGAAGCCGGGGTCACTGAA | + |
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Preference number: 4 (lower is better) Translates to: PSNRSRIPLSPISGKESVLELRS*EAGVTE Trigger: TTCAGTGACCCCGGCTTCTCAGCTCCTGAGCTCCAG...TACAGACTCCTTTCCAGAAATGGGGGAGAGGGGTATTCTGGATCTATTTGATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | ACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTCACTTTCCTCTCAAAGGCTaGGGCCCCAAAAGGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: TVLPKVLSSNPSNHTVAHFPLKG*GPKRDK Trigger: TTTGTCCCTTTTGGGGCCTCAGCCTTTGAGAGGAAA...GTGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCAGGAAATAGTCCCAAATGCAGAAGTAAGGCAGTAATGAGTCCTCTGGGCAGGGTGCTGAGCTaGAGCTCAGGAGCTGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: WLPGNSPKCRSKAVMSPLGRVLS*SSGAEK Trigger: CTTCTCAGCTCCTGAGCTCCAGCTCAGCACCCTGCC...CAGAGGACTCATTACTGCCTTACTTCTGCATTTGGGACTATTTCCTGGAAGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | TCTGGAAAGGAGTCTGTAGGACCTGGCAGGAAGATCCAGACAATAAGGAGTAGATGGCATGCCAGGTCTTaGAGGAGACAGCTGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SGKESVGPGRKIQTIRSRWHARS*RRQLQK Trigger: CTTCTGCAGCTGTCTCCTTCAAGACCTGGCATGCCA...TCTACTCCTTATTGTCTGGATCTTCCTGCCAGGTCCTACAGACTCCTTTCCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | CCAGGAAATAGTCCCAAATGCAGAAGTAAGGCAGTAATGAGTCCTCTGAAAGAGAGAGGCCTTGGGCCCTaGGTCTTGCTGCTCCTAGCT | + |
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Preference number: 4 (lower is better) Translates to: PGNSPKCRSKAVMSPLKERGLGP*VLLLLA Trigger: AGCTAGGAGCAGCAAGACTCAGGGCCCAAGGCCTCT...CTCTTTCAGAGGACTCATTACTGCCTTACTTCTGCATTTGGGACTATTTCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CCA 90 bp | TCTGGAAAGGAGTCTGTAGGACCTGGCAGGAAGATCCAGACAATAAGGAGTAGATGTAGGCTTGACCGATaGGCTCTGATGGGGAGATGG | + |
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Preference number: 4 (lower is better) Translates to: SGKESVGPGRKIQTIRSRCRLDR*ALMGRW Trigger: CCATCTCCCCATCAGAGCCCATCGGTCAAGCCTACA...TCTACTCCTTATTGTCTGGATCTTCCTGCCAGGTCCTACAGACTCCTTTCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076091.4 |
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| CDS-3UTR CCA 90 bp | TGGCTTCCAGGAAATAGTCCCAAATGCAGAAGTAAGGCAGTAATGAGTCCTCTGCTTGCTGCTCCTAGCTaGGCCAGCAGGATAGGACTG | + |
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Preference number: 4 (lower is better) Translates to: WLPGNSPKCRSKAVMSPLLAAPS*ASRIGL Trigger: CAGTCCTATCCTGCTGGCCCAGCTAGGAGCAGCAAG...CAGAGGACTCATTACTGCCTTACTTCTGCATTTGGGACTATTTCCTGGAAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | CCAGGAAATAGTCCCAAATGCAGAAGTAAGGCAGTAATGAGTCCTCTGAAAGAGGCCCGGTCTGTCCAGTaGCCATATTCTCGGGTCACT | + |
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Preference number: 4 (lower is better) Translates to: PGNSPKCRSKAVMSPLKEARSVQ*PYSRVT Trigger: AGTGACCCGAGAATATGGTCACTGGACAGACCGGGC...CTCTTTCAGAGGACTCATTACTGCCTTACTTCTGCATTTGGGACTATTTCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR GCA 90 bp | CAAGGAAAGGAACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCCTTGAAGGAGACAGCTaGAGAAGGCAGGGTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: QGKELQRKETCVQKGQIFLEGDS*RRQGAE Trigger: CTCAGCACCCTGCCTTCTGCAGCTGTCTCCTTCAAG...GAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTTCCTTTCCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR GCA 90 bp | AACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCACCCAGGAATCTTGAAGGAGACAGCTaGAGAAGGCAGGGTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: NSSEKKPVFRKARSSPRNLEGDS*RRQGAE Trigger: CTCAGCACCCTGCCTTCTGCAGCTGTCTCCTTCAAG...ATTCCTGGGTGAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR GCA 90 bp | ACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTCACTCACTATGTAGCCTCTaGATTTCCTCTCAAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: TVLPKVLSSNPSNHTVAHSLCSL*ISSQRL Trigger: CAGCCTTTGAGAGGAAATGCAGAGGCTACATAGTGA...GTGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR TCA 90 bp | AACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCACCCAGGAATGGTCTGCAGCAGTGCTaGCGTGTTCTTCTGCATGTA | + |
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Preference number: 4 (lower is better) Translates to: NSSEKKPVFRKARSSPRNGLQQC*RVLLHV Trigger: TACATGCAGAAGAACACGTCAGCACTGCTGCAGACC...ATTCCTGGGTGAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076091.4 |
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| CDS-3UTR TCA 90 bp | CAAGGAAAGGAACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCTTTCCTCTCAAAGGCTaGGGCCCCAAAAGGGACAAA | + |
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Preference number: 4 (lower is better) Translates to: QGKELQRKETCVQKGQIFFPLKG*GPKRDK Trigger: TTTGTCCCTTTTGGGGCCTCAGCCTTTGAGAGGAAA...GAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTTCCTTTCCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR GCA 90 bp | CAAGGAAAGGAACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCTCACTATGTAGCCTCTaGATTTCCTCTCAAAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: QGKELQRKETCVQKGQIFSLCSL*ISSQRL Trigger: CAGCCTTTGAGAGGAAATGCAGAGGCTACATAGTGA...GAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTTCCTTTCCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS CCA 90 bp | TCCCCCACGAGCTGGAGGTGCTGGGTCAAGGCCAGGAAGGCTCCCTaGGCTCGGCTTAGCCGTTCTGCATCTTCCATGGCATGCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SPTSWRCWVKARKAP*ARLSRSASSMACQV Trigger: GACCTGGCATGCCATGGAAGATGCAGAACGGCTAAGCCGAGCCCAGGGAGCCTTCCTGGCCTTGACCCAGCACCTCCAGCTCGTGGGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CAA 90 bp | GTCCTGGTGGCTGTGACGTGCACTGGGCTGTCAACACTGGAGAGCTCAATAGAAGGGGCTGCCCTGGTGTaGGAGATAGGTCTGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: VLVAVTCTGLSTLESSIEGAALV*EIGLQQ Trigger: CTGCTGCAGACCTATCTCCAACACCAGGGCAGCCCC...TTCTATTGAGCTCTCCAGTGTTGACAGCCCAGTGCACGTCACAGCCACCAGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS TCA 90 bp | ACTGAAGGGGCTGCCCTGGTGTTGGAGATAGGTCTGCAGCAGTGCTaGCGTGTTCTTCTGCATGTAGAGAGCCAGGCTGTAGGCTTGACC | + |
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Preference number: 5 (lower is better) Translates to: TEGAALVLEIGLQQC*RVLLHVESQAVGLT Trigger: GGTCAAGCCTACAGCCTGGCTCTCTACATGCAGAAGAACACGTCAGCACTGCTGCAGACCTATCTCCAACACCAGGGCAGCCCCTTCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076091.4 |
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| CDS-3UTR CAA 90 bp | ACTGTTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACACGGTGGCTCACGCTGAGTACTTAGCCTaGAGGAGAGCCAAGTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: TVLPKVLSSNPSNHTVAHAEYLA*RRAKSL Trigger: GAGGGACTTGGCTCTCCTCAAGGCTAAGTACTCAGC...GTGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAACAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CAA 90 bp | CAAGGAAAGGAACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCGGGGCTGCCCTGGTGTaGGAGATAGGTCTGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: QGKELQRKETCVQKGQIFGAALV*EIGLQQ Trigger: CTGCTGCAGACCTATCTCCAACACCAGGGCAGCCCC...GAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTTCCTTTCCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CAA 90 bp | AACTCCAGCGAAAAGAAACCTGTGTTCAGAAAGGCCAGATCTTCACCCAGGAATGTTGCCCAAGAGGCCTaGGGCCCTGAGTCTTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: NSSEKKPVFRKARSSPRNVAQEA*GPESCC Trigger: GCAGCAAGACTCAGGGCCCAAGGCCTCTTGGGCAAC...ATTCCTGGGTGAAGATCTGGCCTTTCTGAACACAGGTTTCTTTTCGCTGGAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CAA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCGCTGAGTACTTAGCCTaGAGGAGAGCCAAGTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: CGESDLRRIGFLESTRFPAEYLA*RRAKSL Trigger: GAGGGACTTGGCTCTCCTCAAGGCTAAGTACTCAGC...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CAA 90 bp | TGTGGGGAGAGTGACTTGAGGAGAATTGGATTTTTAGAGTCCACGAGGTTCCCCATGGCATGCCAGGTCTaGAAGGAGACAGCTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: CGESDLRRIGFLESTRFPMACQV*KETAAE Trigger: TTCTGCAGCTGTCTCCTTCAAGACCTGGCATGCCAT...GGGGAACCTCGTGGACTCTAAAAATCCAATTCTCCTCAAGTCACTCTCCCCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CAA 90 bp | CCAGGAAATAGTCCCAAATGCAGAAGTAAGGCAGTAATGAGTCCTCTGAAAGAGATGATAGCAGCCATGTaGCCCAAGAGGCCTTGGGCC | + |
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Preference number: 5 (lower is better) Translates to: PGNSPKCRSKAVMSPLKEMIAAM*PKRPWA Trigger: GGCCCAAGGCCTCTTGGGCAACATGGCTGCTATCAT...CTCTTTCAGAGGACTCATTACTGCCTTACTTCTGCATTTGGGACTATTTCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS-3UTR CAA 90 bp | CCATCAAATAGATCCAGAATACCCCTCTCCCCCATTTCTGGAAAGGAGTCTGTAATGGCATGCCAGGTCTaGAAGGAGACAGCTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: PSNRSRIPLSPISGKESVMACQV*KETAAE Trigger: TTCTGCAGCTGTCTCCTTCAAGACCTGGCATGCCAT...TACAGACTCCTTTCCAGAAATGGGGGAGAGGGGTATTCTGGATCTATTTGATGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS CAA 90 bp | TCTGGAGGGATGGGCAGCCCTAGAGCAGTCATGATAGCAGCCATGTaGCCCAAGAGGCCTTGGGCCCTGAGTCTTGCTGCTCCTAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SGGMGSPRAVMIAAM*PKRPWALSLAAPSW Trigger: CCAGCTAGGAGCAGCAAGACTCAGGGCCCAAGGCCTCTTGGGCAACATGGCTGCTATCATGACTGCTCTAGGGCTGCCCATCCCTCCAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS GCA 72 bp | TGGGCTCGGCTTAGCCGTTCTGCATCTTCCATGGCATaGCAGGTCTTGAAGGAGACAGCTGCAGAAGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: WARLSRSASSMA*QVLKETAAEGR Trigger: CCTGCCTTCTGCAGCTGTCTCCTTCAAGACCTGGCATGCCATGGAAGATGCAGAACGGCTAAGCCGAGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS CAA 72 bp | ATGGGCAGCCCTAGAGCAGTCATGATAGCAGCCATGTaGCCCAAGAGGCCTTGGGCCCTGAGTCTTGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: MGSPRAVMIAAM*PKRPWALSLAA Trigger: AGCAGCAAGACTCAGGGCCCAAGGCCTCTTGGGCAACATGGCTGCTATCATGACTGCTCTAGGGCTGCCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS CAA 72 bp | CTTAGCCGTTCTGCATCTTCCATGGCATGCCAGGTCTaGAAGGAGACAGCTGCAGAAGGCAGGGTGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: LSRSASSMACQV*KETAAEGRVLS Trigger: GCTCAGCACCCTGCCTTCTGCAGCTGTCTCCTTCAAGACCTGGCATGCCATGGAAGATGCAGAACGGCTAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076091.4 ENSMUST00000206038.2 |
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| CDS TCA 72 bp | GCTGCCCTGGTGTTGGAGATAGGTCTGCAGCAGTGCTaGCGTGTTCTTCTGCATGTAGAGAGCCAGGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: AALVLEIGLQQC*RVLLHVESQAV Trigger: TACAGCCTGGCTCTCTACATGCAGAAGAACACGTCAGCACTGCTGCAGACCTATCTCCAACACCAGGGCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076091.4 |
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