RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CTF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042340

Ensembl transcript IDs: ENSMUST00000047393.7, ENSMUST00000206506.2, ENSMUST00000206997.2

Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGAAGGACCTCAAAGGGGGAGGGATTTGCCTACAAAGGAACTGGTaGGAAGGTCCTAAGGTGAATGGCCTTGCCACCAGGGGACAAGTA +
Preference number: 1 (lower is better)
Translates to: GKDLKGGGICLQRNW*EGPKVNGLATRGQV
Trigger: TACTTGTCCCCTGGTGGCAAGGCCATTCACCTTAGGACCTTCCCACCAGTTCCTTTGTAGGCAAATCCCTCCCCCTTTGAGGTCCTTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR GCA 90 bp GAAGCTCCCTGCAGAGAGGAGAGCAGAAGAGAGAGACCACACAAATaGAGAAAGATAGGGACAGCCCAAGAACACACAGGACACAGATGG +
Preference number: 1 (lower is better)
Translates to: EAPCREESRRERPHK*RKIGTAQEHTGHRW
Trigger: CCATCTGTGTCCTGTGTGTTCTTGGGCTGTCCCTATCTTTCTGCATTTGTGTGGTCTCTCTCTTCTGCTCTCCTCTCTGCAGGGAGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR TCA 90 bp GACAGCCCAAGAACACACAGGACACAGATGGAGAGACAGAAAATTTaGAGCCAAAGAGGCGAGACAGAGCGAGCTTACAAGAAAAAGTAT +
Preference number: 1 (lower is better)
Translates to: DSPRTHRTQMERQKI*SQRGETERAYKKKY
Trigger: ATACTTTTTCTTGTAAGCTCGCTCTGTCTCGCCTCTTTGGCTTCAAATTTTCTGTCTCTCCATCTGTGTCCTGTGTGTTCTTGGGCTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
3UTR-3UTR CCA 90 bp CCATTGACCAGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATGGAGTCGGAGGCAAGTaGATCTCTATGAGCTGGAGG +
Preference number: 2 (lower is better)
Translates to: PLTSLGRYEREGPQRGRDGVGGK*ISMSWR
Trigger: CCTCCAGCTCATAGAGATCCACTTGCCTCCGACTCC...ATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCTGGTCAATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR-3UTR CCA 90 bp AGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATTTGCCTACATCACAGGGAGACAGATaGGGAAATTGGGAGTCGGAG +
Preference number: 2 (lower is better)
Translates to: SLGRYEREGPQRGRDLPTSQGDR*GNWESE
Trigger: CTCCGACTCCCAATTTCCCCATCTGTCTCCCTGTGA...TGTAGGCAAATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR-3UTR CCA 90 bp GTTACACATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGGAGTCGGTGGATCTCTATGAGCTaGAGGCCAGCCTGGCCTACA +
Preference number: 2 (lower is better)
Translates to: VTHTHMDHRETDGEIGSRWISMS*RPAWPT
Trigger: TGTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCA...CCGACTCCCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATGTGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR-3UTR CCA 90 bp CCATTGACCAGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATCTACAAAGGAACTGGTaGGAAGGTCCTAAGGTGAAT +
Preference number: 2 (lower is better)
Translates to: PLTSLGRYEREGPQRGRDLQRNW*EGPKVN
Trigger: ATTCACCTTAGGACCTTCCCACCAGTTCCTTTGTAG...ATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCTGGTCAATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR-3UTR CCA 90 bp AGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATTTGCCTACATTACACATACCCATATaGATCACAGGGAGACAGATG +
Preference number: 2 (lower is better)
Translates to: SLGRYEREGPQRGRDLPTLHIPI*ITGRQM
Trigger: CATCTGTCTCCCTGTGATCCATATGGGTATGTGTAA...TGTAGGCAAATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR-3UTR CCA 90 bp CAAGTGGATCTCTATGAGCTGGAGGCCAGCCTGGCCTACATAGCAAGTTCCAGGCACACAGGACACAGATaGAGAGACAGAAAATTTGAA +
Preference number: 2 (lower is better)
Translates to: QVDLYELEASLAYIASSRHTGHR*RDRKFE
Trigger: TTCAAATTTTCTGTCTCTCCATCTGTGTCCTGTGTG...CCTGGAACTTGCTATGTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR-3UTR TCA 90 bp GTTACACATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGGAGTCGGGAGAGACAGAAAATTTaGAGCCAAAGAGGCGAGACA +
Preference number: 2 (lower is better)
Translates to: VTHTHMDHRETDGEIGSRERQKI*SQRGET
Trigger: TGTCTCGCCTCTTTGGCTTCAAATTTTCTGTCTCTC...CCGACTCCCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATGTGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR-3UTR GCA 90 bp AGTAAGGGTTACACATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGGAGAGACCACACAAATaGAGAAAGATAGGGACAGCC +
Preference number: 2 (lower is better)
Translates to: SKGYTYPYGSQGDRWGNWERPHK*RKIGTA
Trigger: GGCTGTCCCTATCTTTCTGCATTTGTGTGGTCTCTC...CCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATGTGTAACCCTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR GCA 72 bp GGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATTTaGCTACAAAGGAACTGGTGGGAAGGTCCTAAGGTG +
Preference number: 3 (lower is better)
Translates to: GMKGKDLKGGGI*LQRNWWEGPKV
Trigger: CACCTTAGGACCTTCCCACCAGTTCCTTTGTAGGCAAATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR TCA 72 bp TACATAGCAAGTTCCAGGCCATCCAGAGCTATATGGTaGGACCCTGTCTCAACAACAAGCAAGCAAGCAAGC +
Preference number: 3 (lower is better)
Translates to: YIASSRPSRAIW*DPVSTTSKQAS
Trigger: GCTTGCTTGCTTGCTTGTTGTTGAGACAGGGTCTCACCATATAGCTCTGGATGGCCTGGAACTTGCTATGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp GGAGGCCAGCCTGGCCTACATAGCAAGTTCCAGGCCATCCAGAGCTATATGGTGGGGTTCAGCTCCGCCTaGCGGCGGCGGACGGCATCC +
Preference number: 4 (lower is better)
Translates to: GGQPGLHSKFQAIQSYMVGFSSA*RRRTAS
Trigger: GGATGCCGTCCGCCGCCGCCAGGCGGAGCTGAACCC...CACCATATAGCTCTGGATGGCCTGGAACTTGCTATGTAGGCCAGGCTGGCCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp GGAGGCCAGCCTGGCCTACATAGCAAGTTCCAGGCCATCCAGAGCTATATGGTGCCCAGGGCCCGAACCTaGCGGGCTGCGTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: GGQPGLHSKFQAIQSYMVPRART*RAASSR
Trigger: CCTGGAGGACGCAGCCCGCCAGGTTCGGGCCCTGGG...CACCATATAGCTCTGGATGGCCTGGAACTTGCTATGTAGGCCAGGCTGGCCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp ATTGGGAGTCGGAGGCAAGTGGATCTCTATGAGCTGGAGGCCAGCCTGGCCTACACCGGTAGCCCTGCATaGCTCGGAGCCGGGCCACTC +
Preference number: 4 (lower is better)
Translates to: IGSRRQVDLYELEASLAYTGSPA*LGAGPL
Trigger: GAGTGGCCCGGCTCCGAGCCATGCAGGGCTACCGGT...GTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCACTTGCCTCCGACTCCCAAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp CCATTGACCAGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATTCAGGCGACGCCCCCTaGCACCAGCTGGCCCAGGTC +
Preference number: 4 (lower is better)
Translates to: PLTSLGRYEREGPQRGRDSGDAP*HQLAQV
Trigger: GACCTGGGCCAGCTGGTGCCAGGGGGCGTCGCCTGA...ATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCTGGTCAATGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp CAAGTGGATCTCTATGAGCTGGAGGCCAGCCTGGCCTACATAGCAAGTTCCAGGCCCCCTGGCACCAGCTaGCCCAGGTCGCCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: QVDLYELEASLAYIASSRPPGTS*PRSPSV
Trigger: CACAGAGGGCGACCTGGGCCAGCTGGTGCCAGGGGG...CCTGGAACTTGCTATGTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCACTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR GCA 90 bp CAAGTGGATCTCTATGAGCTGGAGGCCAGCCTGGCCTACATAGCAAGTTCCAGGCCAGGTCGCCCTCTGTaGGGCTCACCCACTCGCCAT +
Preference number: 4 (lower is better)
Translates to: QVDLYELEASLAYIASSRPGRPL*GSPTRH
Trigger: ATGGCGAGTGGGTGAGCCGCACAGAGGGCGACCTGG...CCTGGAACTTGCTATGTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCACTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR GCA 90 bp AGTAAGGGTTACACATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGCCGAACCTGGCGGGCTaGGTCCTCCAGGCTCCGCAG +
Preference number: 4 (lower is better)
Translates to: SKGYTYPYGSQGDRWGNWPNLAG*VLQAPQ
Trigger: CTGCGGAGCCTGGAGGACGCAGCCCGCCAGGTTCGG...CCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATGTGTAACCCTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp CAAGTGGATCTCTATGAGCTGGAGGCCAGCCTGGCCTACATAGCAAGTTCCAGGGAGGAGTCAGTCTGGTaGTCTTCCAGACTTCCCTCC +
Preference number: 4 (lower is better)
Translates to: QVDLYELEASLAYIASSREESVW*SSRLPS
Trigger: GGAGGGAAGTCTGGAAGACCACCAGACTGACTCCTC...CCTGGAACTTGCTATGTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCACTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp CCATTGACCAGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATATTGAGGAGTCAGTCTaGTGGTCTTCCAGACTTCCC +
Preference number: 4 (lower is better)
Translates to: PLTSLGRYEREGPQRGRDIEESV*WSSRLP
Trigger: GGGAAGTCTGGAAGACCACCAGACTGACTCCTCAAT...ATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCTGGTCAATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp CATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGGAGTCGGAGGCAAGGAACCCCAGCACCTTaGCTGAGAAGATGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: HTHMDHRETDGEIGSRRQGTPAP*LRRCLQ
Trigger: CTGCAGGCATCTTCTCAGCCAAGGTGCTGGGGTTCC...TTGCCTCCGACTCCCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp CCATTGACCAGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATATCTTGGCCTCCAAATaGGGTAGGAATGAGATTGAG +
Preference number: 4 (lower is better)
Translates to: PLTSLGRYEREGPQRGRDILASK*GRNEIE
Trigger: CTCAATCTCATTCCTACCCCATTTGGAGGCCAAGAT...ATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCTGGTCAATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
3UTR CAA 72 bp ATACCCATATGGATCACAGGGAGACAGATGGGGAAATaGGGAGTCGGAGGCAAGTGGATCTCTATGAGCTGG +
Preference number: 4 (lower is better)
Translates to: IPIWITGRQMGK*GVGGKWISMSW
Trigger: CCAGCTCATAGAGATCCACTTGCCTCCGACTCCCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp GTTACACATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGGAGTCGGGTTGTTCTGCATATTTaGTCAGGAGGCGGGCAAGGT +
Preference number: 4 (lower is better)
Translates to: VTHTHMDHRETDGEIGSRVVLHI*SGGGQG
Trigger: ACCTTGCCCGCCTCCTGACCAAATATGCAGAACAAC...CCGACTCCCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATGTGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR CCA 90 bp AGTAAGGGTTACACATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGGCAAGGTTGTGTGTCTaGCGGATCTTGGCCTCCAAA +
Preference number: 4 (lower is better)
Translates to: SKGYTYPYGSQGDRWGNWARLCV*RILASK
Trigger: TTTGGAGGCCAAGATCCGCCAGACACACAACCTTGC...CCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATGTGTAACCCTTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS-3UTR GCA 90 bp AGTAAGGGTTACACATACCCATATGGATCACAGGGAGACAGATGGGGAAATTGGCTCCAGAAGTTGTTCTaGATATTTGGTCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: SKGYTYPYGSQGDRWGNWLQKLF*IFGQEA
Trigger: CGCCTCCTGACCAAATATGCAGAACAACTTCTGGAG...CCAATTTCCCCATCTGTCTCCCTGTGATCCATATGGGTATGTGTAACCCTTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS GCA 90 bp GAAGAGGGTGGCGACGGTGACGGGCTCTGGCCCGGGCCCGCGGGCTaGAGCGCCCAGCGCGGCCAGCACTGTCTCCACCGCGGCGCCCAG +
Preference number: 5 (lower is better)
Translates to: EEGGDGDGLWPGPAG*SAQRGQHCLHRGAQ
Trigger: CTGGGCGCCGCGGTGGAGACAGTGCTGGCCGCGCTGGGCGCTGCAGCCCGCGGGCCCGGGCCAGAGCCCGTCACCGTCGCCACCCTCTTC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
CDS GCA 90 bp CAGCACTGTCTCCACCGCGGCGCCCAGGGCCCGAACCTGGCGGGCTaGGTCCTCCAGGCTCCGCAGCAGGCGCGGGGCGCGCGGGTTCAG +
Preference number: 5 (lower is better)
Translates to: QHCLHRGAQGPNLAG*VLQAPQQARGARVQ
Trigger: CTGAACCCGCGCGCCCCGCGCCTGCTGCGGAGCCTGGAGGACGCAGCCCGCCAGGTTCGGGCCCTGGGCGCCGCGGTGGAGACAGTGCTG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CCA 90 bp GCGGCTGCATCCTGCCGCAGCCGCTCGGACACCGGTAGCCCTGCATaGCTCGGAGCCGGGCCACTCAGGCCGGCCAGCGGCAGCCGCGGT +
Preference number: 5 (lower is better)
Translates to: AAASCRSRSDTGSPA*LGAGPLRPASGSRG
Trigger: ACCGCGGCTGCCGCTGGCCGGCCTGAGTGGCCCGGCTCCGAGCCATGCAGGGCTACCGGTGTCCGAGCGGCTGCGGCAGGATGCAGCCGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS TCA 90 bp GCTCGGAGCCGGGCCACTCAGGCCGGCCAGCGGCAGCCGCGGTGGTaGGAAGCCCGGCAGCCCAAAGGGCTCTCCCTGTTGCTGCACGTA +
Preference number: 5 (lower is better)
Translates to: ARSRATQAGQRQPRW*EARQPKGLSLLLHV
Trigger: TACGTGCAGCAACAGGGAGAGCCCTTTGGGCTGCCGGGCTTCTCACCACCGCGGCTGCCGCTGGCCGGCCTGAGTGGCCCGGCTCCGAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS GCA 90 bp ACGGCATCCAACAGCGCGGGCAGCACACTCAGGGCGGCTGCATCCTaGCGCAGCCGCTCGGACACCGGTAGCCCTGCATGGCTCGGAGCC +
Preference number: 5 (lower is better)
Translates to: TASNSAGSTLRAAAS*RSRSDTGSPAWLGA
Trigger: GGCTCCGAGCCATGCAGGGCTACCGGTGTCCGAGCGGCTGCGGCAGGATGCAGCCGCCCTGAGTGTGCTGCCCGCGCTGTTGGATGCCGT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS TCA 90 bp CCACTCGCCATAGAGGCCGCACACGTGGAACCCCAGCACCTTGGCTaGGAAGATGCCTGCAGTGCTGTTGGCCGTGAAGAGGGTGGCGAC +
Preference number: 5 (lower is better)
Translates to: PLAIEAAHVEPQHLG*EDACSAVGREEGGD
Trigger: GTCGCCACCCTCTTCACGGCCAACAGCACTGCAGGCATCTTCTCAGCCAAGGTGCTGGGGTTCCACGTGTGCGGCCTCTATGGCGAGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
CDS-3UTR CAA 90 bp CAAGTGGATCTCTATGAGCTGGAGGCCAGCCTGGCCTACATAGCAAGTTCCAGGTGGAACCCCAGCACCTaGGCTGAGAAGATGCCTGCA +
Preference number: 5 (lower is better)
Translates to: QVDLYELEASLAYIASSRWNPST*AEKMPA
Trigger: TGCAGGCATCTTCTCAGCCAAGGTGCTGGGGTTCCA...CCTGGAACTTGCTATGTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS CCA 90 bp AGGAGGCGGGCAAGGTTGTGTGTCTGGCGGATCTTGGCCTCCAAATaGGGTAGGAATGAGATTGAGGAGTCAGTCTGGTGGTCTTCCAGA +
Preference number: 5 (lower is better)
Translates to: RRRARLCVWRILASK*GRNEIEESVWWSSR
Trigger: TCTGGAAGACCACCAGACTGACTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS CCA 90 bp CTCCCTGTTGCTGCACGTATTCCTCCAGAAGTTGTTCTGCATATTTaGTCAGGAGGCGGGCAAGGTTGTGTGTCTGGCGGATCTTGGCCT +
Preference number: 5 (lower is better)
Translates to: LPVAARIPPEVVLHI*SGGGQGCVSGGSWP
Trigger: AGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACTTCTGGAGGAATACGTGCAGCAACAGGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS-3UTR CAA 90 bp TTGACCAGCCTAGGGCGGTATGAAAGGGAAGGACCTCAAAGGGGGAGGGATTTGAGTTGTTCTGCATATTaGGTCAGGAGGCGGGCAAGG +
Preference number: 5 (lower is better)
Translates to: LTSLGRYEREGPQRGRDLSCSAY*VRRRAR
Trigger: CCTTGCCCGCCTCCTGACCAAATATGCAGAACAACT...CAAATCCCTCCCCCTTTGAGGTCCTTCCCTTTCATACCGCCCTAGGCTGGTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS CCA 90 bp CATATTTGGTCAGGAGGCGGGCAAGGTTGTGTGTCTGGCGGATCTTaGCCTCCAAATGGGGTAGGAATGAGATTGAGGAGTCAGTCTGGT +
Preference number: 5 (lower is better)
Translates to: HIWSGGGQGCVSGGS*PPNGVGMRLRSQSG
Trigger: ACCAGACTGACTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGACCAAATATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CCA 90 bp AGTTGTTCTGCATATTTGGTCAGGAGGCGGGCAAGGTTGTGTGTCTaGCGGATCTTGGCCTCCAAATGGGGTAGGAATGAGATTGAGGAG +
Preference number: 5 (lower is better)
Translates to: SCSAYLVRRRARLCV*RILASKWGRNEIEE
Trigger: CTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS-3UTR CAA 90 bp ATTGGGAGTCGGAGGCAAGTGGATCTCTATGAGCTGGAGGCCAGCCTGGCCTACGTATTCCTCCAGAAGTaGTTCTGCATATTTGGTCAG +
Preference number: 5 (lower is better)
Translates to: IGSRRQVDLYELEASLAYVFLQK*FCIFGQ
Trigger: CTGACCAAATATGCAGAACAACTTCTGGAGGAATAC...GTAGGCCAGGCTGGCCTCCAGCTCATAGAGATCCACTTGCCTCCGACTCCCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047393.7
CDS CCA 72 bp GTTGGCCGTGAAGAGGGTGGCGACGGTGACGGGCTCTaGCCCGGGCCCGCGGGCTGCAGCGCCCAGCGCGGC +
Preference number: 6 (lower is better)
Translates to: VGREEGGDGDGL*PGPAGCSAQRG
Trigger: GCCGCGCTGGGCGCTGCAGCCCGCGGGCCCGGGCCAGAGCCCGTCACCGTCGCCACCCTCTTCACGGCCAAC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
CDS TCA 72 bp CGGGCCACTCAGGCCGGCCAGCGGCAGCCGCGGTGGTaGGAAGCCCGGCAGCCCAAAGGGCTCTCCCTGTTG +
Preference number: 6 (lower is better)
Translates to: RATQAGQRQPRW*EARQPKGLSLL
Trigger: CAACAGGGAGAGCCCTTTGGGCTGCCGGGCTTCTCACCACCGCGGCTGCCGCTGGCCGGCCTGAGTGGCCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS GCA 72 bp CGCCCCCTGGCACCAGCTGGCCCAGGTCGCCCTCTGTaGGGCTCACCCACTCGCCATAGAGGCCGCACACGT +
Preference number: 6 (lower is better)
Translates to: RPLAPAGPGRPL*GSPTRHRGRTR
Trigger: ACGTGTGCGGCCTCTATGGCGAGTGGGTGAGCCGCACAGAGGGCGACCTGGGCCAGCTGGTGCCAGGGGGCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
CDS GCA 72 bp AACAGCGCGGGCAGCACACTCAGGGCGGCTGCATCCTaGCGCAGCCGCTCGGACACCGGTAGCCCTGCATGG +
Preference number: 6 (lower is better)
Translates to: NSAGSTLRAAAS*RSRSDTGSPAW
Trigger: CCATGCAGGGCTACCGGTGTCCGAGCGGCTGCGGCAGGATGCAGCCGCCCTGAGTGTGCTGCCCGCGCTGTT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CAA 90 bp ACGTGGAACCCCAGCACCTTGGCTGAGAAGATGCCTGCAGTGCTGTaGGCCGTGAAGAGGGTGGCGACGGTGACGGGCTCTGGCCCGGGC +
Preference number: 6 (lower is better)
Translates to: TWNPSTLAEKMPAVL*AVKRVATVTGSGPG
Trigger: GCCCGGGCCAGAGCCCGTCACCGTCGCCACCCTCTTCACGGCCAACAGCACTGCAGGCATCTTCTCAGCCAAGGTGCTGGGGTTCCACGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
CDS CAA 72 bp CCCAGCACCTTGGCTGAGAAGATGCCTGCAGTGCTGTaGGCCGTGAAGAGGGTGGCGACGGTGACGGGCTCT +
Preference number: 6 (lower is better)
Translates to: PSTLAEKMPAVL*AVKRVATVTGS
Trigger: AGAGCCCGTCACCGTCGCCACCCTCTTCACGGCCAACAGCACTGCAGGCATCTTCTCAGCCAAGGTGCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
CDS TCA 72 bp ATAGAGGCCGCACACGTGGAACCCCAGCACCTTGGCTaGGAAGATGCCTGCAGTGCTGTTGGCCGTGAAGAG +
Preference number: 6 (lower is better)
Translates to: IEAAHVEPQHLG*EDACSAVGREE
Trigger: CTCTTCACGGCCAACAGCACTGCAGGCATCTTCTCAGCCAAGGTGCTGGGGTTCCACGTGTGCGGCCTCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
CDS CAA 72 bp GTCAGGAGGCGGGCAAGGTTGTGTGTCTGGCGGATCTaGGCCTCCAAATGGGGTAGGAATGAGATTGAGGAG +
Preference number: 6 (lower is better)
Translates to: VRRRARLCVWRI*ASKWGRNEIEE
Trigger: CTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS GCA 72 bp GGTGAGAAGCCCGGCAGCCCAAAGGGCTCTCCCTGTTaGTGCACGTATTCCTCCAGAAGTTGTTCTGCATAT +
Preference number: 6 (lower is better)
Translates to: GEKPGSPKGSPC*CTYSSRSCSAY
Trigger: ATATGCAGAACAACTTCTGGAGGAATACGTGCAGCAACAGGGAGAGCCCTTTGGGCTGCCGGGCTTCTCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CCA 72 bp TCAGGAGGCGGGCAAGGTTGTGTGTCTGGCGGATCTTaGCCTCCAAATGGGGTAGGAATGAGATTGAGGAGT +
Preference number: 6 (lower is better)
Translates to: SGGGQGCVSGGS*PPNGVGMRLRS
Trigger: ACTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CAA 90 bp GCATATTTGGTCAGGAGGCGGGCAAGGTTGTGTGTCTGGCGGATCTaGGCCTCCAAATGGGGTAGGAATGAGATTGAGGAGTCAGTCTGG +
Preference number: 6 (lower is better)
Translates to: AYLVRRRARLCVWRI*ASKWGRNEIEESVW
Trigger: CCAGACTGACTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGACCAAATATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CCA 72 bp GCAAGGTTGTGTGTCTGGCGGATCTTGGCCTCCAAATaGGGTAGGAATGAGATTGAGGAGTCAGTCTGGTGG +
Preference number: 6 (lower is better)
Translates to: ARLCVWRILASK*GRNEIEESVWW
Trigger: CCACCAGACTGACTCCTCAATCTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CAA 72 bp AGTTGTTCTGCATATTTGGTCAGGAGGCGGGCAAGGTaGTGTGTCTGGCGGATCTTGGCCTCCAAATGGGGT +
Preference number: 6 (lower is better)
Translates to: SCSAYLVRRRAR*CVWRILASKWG
Trigger: ACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CAA 72 bp GGGCTCTCCCTGTTGCTGCACGTATTCCTCCAGAAGTaGTTCTGCATATTTGGTCAGGAGGCGGGCAAGGTT +
Preference number: 6 (lower is better)
Translates to: GLSLLLHVFLQK*FCIFGQEAGKV
Trigger: AACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACTTCTGGAGGAATACGTGCAGCAACAGGGAGAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS CAA 90 bp TCCTCCAGAAGTTGTTCTGCATATTTGGTCAGGAGGCGGGCAAGGTaGTGTGTCTGGCGGATCTTGGCCTCCAAATGGGGTAGGAATGAG +
Preference number: 6 (lower is better)
Translates to: SSRSCSAYLVRRRAR*CVWRILASKWGRNE
Trigger: CTCATTCCTACCCCATTTGGAGGCCAAGATCCGCCAGACACACAACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACTTCTGGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2
CDS GCA 72 bp TCCCTGTTGCTGCACGTATTCCTCCAGAAGTTGTTCTaGATATTTGGTCAGGAGGCGGGCAAGGTTGTGTGT +
Preference number: 6 (lower is better)
Translates to: SLLLHVFLQKLF*IFGQEAGKVVC
Trigger: ACACACAACCTTGCCCGCCTCCTGACCAAATATGCAGAACAACTTCTGGAGGAATACGTGCAGCAACAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047393.7
ENSMUST00000206506.2
ENSMUST00000206997.2