RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CTDSP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026176

Ensembl transcript IDs: ENSMUST00000027367.14, ENSMUST00000152659.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGCACGGAACAGGGAAGGAGGAGTTGGCACAGGAGGAGCCAGCTTaGTTAAGGTTTGGAGACTCCCTAACCCCACAAGAAGGTTCCACC +
Preference number: 1 (lower is better)
Translates to: LHGTGKEELAQEEPA*LRFGDSLTPQEGST
Trigger: GGTGGAACCTTCTTGTGGGGTTAGGGAGTCTCCAAACCTTAACCAAGCTGGCTCCTCCTGTGCCAACTCCTCCTTCCCTGTTCCGTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 90 bp CCGGCCATCTTCTCTCCCTTCACCAACCCCCTTGGCACTTGTTTGTaGGTTCACTTAACCCTCATAATCTGGGGAGAGAGCCTAAGGGCT +
Preference number: 1 (lower is better)
Translates to: PAIFSPFTNPLGTCL*VHLTLIIWGESLRA
Trigger: AGCCCTTAGGCTCTCTCCCCAGATTATGAGGGTTAAGTGAACCCACAAACAAGTGCCAAGGGGGTTGGTGAAGGGAGAGAAGATGGCCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 90 bp AGGTCATCTGATTCCGGCCATCTTCTCTCCCTTCACCAACCCCCTTaGCACTTGTTTGTGGGTTCACTTAACCCTCATAATCTGGGGAGA +
Preference number: 1 (lower is better)
Translates to: RSSDSGHLLSLHQPP*HLFVGSLNPHNLGR
Trigger: TCTCCCCAGATTATGAGGGTTAAGTGAACCCACAAACAAGTGCCAAGGGGGTTGGTGAAGGGAGAGAAGATGGCCGGAATCAGATGACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR TCA 90 bp CCAGGCAGTCCCTCTTGGCTAACTTCCTCCTGTCCAGCAGGGTTATaGAAAATAGTCAAAACTGCAGTCACAGATGTGAGACATTCTCGC +
Preference number: 1 (lower is better)
Translates to: PGSPSWLTSSCPAGL*KIVKTAVTDVRHSR
Trigger: GCGAGAATGTCTCACATCTGTGACTGCAGTTTTGACTATTTTTCATAACCCTGCTGGACAGGAGGAAGTTAGCCAAGAGGGACTGCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR GCA 90 bp AAGCAGAGACAACCCCCTCCCACTAAGCTGGTGGGACTAGCTCACTaGTGGGCACTGAAGGTACTCAATAAATGTCTTTTGAATGAAGAG +
Preference number: 1 (lower is better)
Translates to: KQRQPPPTKLVGLAH*WALKVLNKCLLNEE
Trigger: CTCTTCATTCAAAAGACATTTATTGAGTACCTTCAGTGCCCAGCAGTGAGCTAGTCCCACCAGCTTAGTGGGAGGGGGTTGTCTCTGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR GCA 90 bp GCTAACTTCCTCCTGTCCAGCAGGGTTATGAAAAATAGTCAAAACTaGAGTCACAGATGTGAGACATTCTCGCACTTCAGGTCCCTTCCC +
Preference number: 1 (lower is better)
Translates to: ANFLLSSRVMKNSQN*SHRCETFSHFRSLP
Trigger: GGGAAGGGACCTGAAGTGCGAGAATGTCTCACATCTGTGACTGCAGTTTTGACTATTTTTCATAACCCTGCTGGACAGGAGGAAGTTAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp CAGCCTTGGACAAGCTGGACAGGGAGCGTTCCTCCCGAGGAAGGTCCCCAGCTCACGGGGGTGGGTGGGTaGGTGGGGAATCCAAGGCAC +
Preference number: 2 (lower is better)
Translates to: QPWTSWTGSVPPEEGPQLTGVGG*VGNPRH
Trigger: GTGCCTTGGATTCCCCACCCACCCACCCACCCCCGT...GAGCTGGGGACCTTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR GCA 90 bp GCACGTGACATCTGGGGTTTAGAGGCACCTAAAAATGAAGCAGAGACAACCCCCCAGGCGCCCACAGTCTaGTGGGGAGAGGCTTGGGCC +
Preference number: 2 (lower is better)
Translates to: ARDIWGLEAPKNEAETTPQAPTV*WGEAWA
Trigger: GGCCCAAGCCTCTCCCCAGCAGACTGTGGGCGCCTG...GGGGGTTGTCTCTGCTTCATTTTTAGGTGCCTCTAAACCCCAGATGTCACGTGC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp GCTCGTGCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTCAGCCTTGGACAAGCTaGACAGGGAGCGTTCCTCCC +
Preference number: 2 (lower is better)
Translates to: ARAMVHVRRSEDNLWEFVQPWTS*TGSVPP
Trigger: GGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTG...AACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGCACGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp CAGCCTTGGACAAGCTGGACAGGGAGCGTTCCTCCCGAGGAAGGTCCCCAGCTCCGAAAAGGCCCAATTTaGCAACAGAGAAACATGGCA +
Preference number: 2 (lower is better)
Translates to: QPWTSWTGSVPPEEGPQLRKGPI*QQRNMA
Trigger: TGCCATGTTTCTCTGTTGCCAAATTGGGCCTTTTCG...GAGCTGGGGACCTTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp GCTCGTGCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTCCCTCCCCCAATTTCTaGGCCCAGGGAAGGGTTAAG +
Preference number: 2 (lower is better)
Translates to: ARAMVHVRRSEDNLWEFVPSPNF*AQGRVK
Trigger: CTTAACCCTTCCCTGGGCCCAGAAATTGGGGGAGGG...AACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGCACGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR TCA 90 bp GGCGGAATAGGAGGGGGTCTAGCTTTCTCTTTAGTTATCACTCTGAGGTGCTCAACAGAAGACCCGACCTaGCCCCTCAGCCCAGCTTGT +
Preference number: 2 (lower is better)
Translates to: GGIGGGLAFSLVITLRCSTEDPT*PLSPAC
Trigger: ACAAGCTGGGCTGAGGGGTCAGGTCGGGTCTTCTGT...TGAGCACCTCAGAGTGATAACTAAAGAGAAAGCTAGACCCCCTCCTATTCCGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp GCACGTGACATCTGGGGTTTAGAGGCACCTAAAAATGAAGCAGAGACAACCCCCAGCAGCCTTCAGCCTTaGACAAGCTGGACAGGGAGC +
Preference number: 2 (lower is better)
Translates to: ARDIWGLEAPKNEAETTPSSLQP*TSWTGS
Trigger: GCTCCCTGTCCAGCTTGTCCAAGGCTGAAGGCTGCT...GGGGGTTGTCTCTGCTTCATTTTTAGGTGCCTCTAAACCCCAGATGTCACGTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CAA 90 bp TCTGATTCCGGCCATCTTCTCTCCCTTCACCAACCCCCTTGGCACTaGTTTGTGGGTTCACTTAACCCTCATAATCTGGGGAGAGAGCCT +
Preference number: 2 (lower is better)
Translates to: SDSGHLLSLHQPPWH*FVGSLNPHNLGREP
Trigger: AGGCTCTCTCCCCAGATTATGAGGGTTAAGTGAACCCACAAACAAGTGCCAAGGGGGTTGGTGAAGGGAGAGAAGATGGCCGGAATCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR GCA 90 bp CACAGAGGCGGAATAGGAGGGGGTCTAGCTTTCTCTTTAGTTATCACTCTGAGGTTGAACTGCAGACTCTaGAGGTATGGGGAGGGGCTT +
Preference number: 2 (lower is better)
Translates to: HRGGIGGGLAFSLVITLRLNCRL*RYGEGL
Trigger: AAGCCCCTCCCCATACCTGCAGAGTCTGCAGTTCAA...CCTCAGAGTGATAACTAAAGAGAAAGCTAGACCCCCTCCTATTCCGCCTCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp CTCTTTAGTTATCACTCTGAGGTGCTCAGGTCACAGAGAAGGCACTTAATTGGGCAGGGAAGGAGGAGTTaGCACAGGAGGAGCCAGCTT +
Preference number: 2 (lower is better)
Translates to: LFSYHSEVLRSQRRHLIGQGRRS*HRRSQL
Trigger: AAGCTGGCTCCTCCTGTGCCAACTCCTCCTTCCCTG...CCCAATTAAGTGCCTTCTCTGTGACCTGAGCACCTCAGAGTGATAACTAAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp GCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTTTCTCTAGCTTGGTTAAGGTTTaGAGACTCCCTAACCCCACA +
Preference number: 2 (lower is better)
Translates to: AMVHVRRSEDNLWEFVFSSLVKV*RLPNPT
Trigger: TGTGGGGTTAGGGAGTCTCCAAACCTTAACCAAGCT...AGAGAAAACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR GCA 90 bp CTCTTTAGTTATCACTCTGAGGTGCTCAGGTCACAGAGAAGGCACTTAATTGGGCCTAAGGGCTTGAACTaGAGACTCTGCAGGTATGGG +
Preference number: 2 (lower is better)
Translates to: LFSYHSEVLRSQRRHLIGPKGLN*RLCRYG
Trigger: CCCATACCTGCAGAGTCTGCAGTTCAAGCCCTTAGG...CCCAATTAAGTGCCTTCTCTGTGACCTGAGCACCTCAGAGTGATAACTAAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp GGCGGAATAGGAGGGGGTCTAGCTTTCTCTTTAGTTATCACTCTGAGGTGCTCAAGAAACATGGCAGCGTaGATAAGACAGAAGTGGGGA +
Preference number: 2 (lower is better)
Translates to: GGIGGGLAFSLVITLRCSRNMAA*IRQKWG
Trigger: TCCCCACTTCTGTCTTATCCACGCTGCCATGTTTCT...TGAGCACCTCAGAGTGATAACTAAAGAGAAAGCTAGACCCCCTCCTATTCCGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp CTCTTTAGTTATCACTCTGAGGTGCTCAGGTCACAGAGAAGGCACTTAATTGGGGGAAAGGGGAGAAATTaGTTCCTCTCAGGTCAGCCT +
Preference number: 2 (lower is better)
Translates to: LFSYHSEVLRSQRRHLIGGKGRN*FLSGQP
Trigger: AGGCTGACCTGAGAGGAACCAATTTCTCCCCTTTCC...CCCAATTAAGTGCCTTCTCTGTGACCTGAGCACCTCAGAGTGATAACTAAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CCA 90 bp GCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTTTCTCTATATACATATTTATATaGCACCACGGGGGCATCCTG +
Preference number: 2 (lower is better)
Translates to: AMVHVRRSEDNLWEFVFSIYIFI*HHGGIL
Trigger: CAGGATGCCCCCGTGGTGCCATATAAATATGTATAT...AGAGAAAACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR GCA 90 bp TCCAGCAGGGTTATGAAAAATAGTCAAAACTGCAGTCACAGATGTGAGACATTCGCTCACTGTCCTCCATaGAACATGGCAGGGGAGACA +
Preference number: 2 (lower is better)
Translates to: SSRVMKNSQNCSHRCETFAHCPP*NMAGET
Trigger: TGTCTCCCCTGCCATGTTGCATGGAGGACAGTGAGC...GAATGTCTCACATCTGTGACTGCAGTTTTGACTATTTTTCATAACCCTGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CAA 90 bp ACGTACAAACTGGTGGGGCACCGTCATCCCAGGAGGGAGGAGGGAAAGGGGAGAGGAGAGGCTTGGGCCTaGATGAGAGGCAGGTCCTGG +
Preference number: 3 (lower is better)
Translates to: TYKLVGHRHPRREEGKGRGEAWA*MRGRSW
Trigger: CCAGGACCTGCCTCTCATCAAGGCCCAAGCCTCTCC...TCTCCCCTTTCCCTCCTCCCTCCTGGGATGACGGTGCCCCACCAGTTTGTACGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp AGTGAGATATGGAGCAGCCTTCAGCCTTGGACAAGCTaGACAGGGAGCGTTCCTCCCGAGGAAGGTCCCCAG +
Preference number: 3 (lower is better)
Translates to: SEIWSSLQPWTS*TGSVPPEEGPQ
Trigger: CTGGGGACCTTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTGAAGGCTGCTCCATATCTCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CAA 90 bp GCTCGTGCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTCTGCTGGGGAGAGGCTaGGGCCTTGATGAGAGGCAG +
Preference number: 3 (lower is better)
Translates to: ARAMVHVRRSEDNLWEFVLLGRG*GLDERQ
Trigger: CTGCCTCTCATCAAGGCCCAAGCCTCTCCCCAGCAG...AACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGCACGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp TGGGGCTTAAGTGAGATATGGAGCAGCCTTCAGCCTTaGACAAGCTGGACAGGGAGCGTTCCTCCCGAGGAA +
Preference number: 3 (lower is better)
Translates to: WGLSEIWSSLQP*TSWTGSVPPEE
Trigger: TTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTGAAGGCTGCTCCATATCTCACTTAAGCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp CAGGGCTTTGGGGAGACTTGGGGCTTAAGTGAGATATaGAGCAGCCTTCAGCCTTGGACAAGCTGGACAGGG +
Preference number: 3 (lower is better)
Translates to: QGFGETWGLSEI*SSLQPWTSWTG
Trigger: CCCTGTCCAGCTTGTCCAAGGCTGAAGGCTGCTCCATATCTCACTTAAGCCCCAAGTCTCCCCAAAGCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp GGAGTTGGCACAGGAGGAGCCAGCTTGGTTAAGGTTTaGAGACTCCCTAACCCCACAAGAAGGTTCCACCCC +
Preference number: 3 (lower is better)
Translates to: GVGTGGASLVKV*RLPNPTRRFHP
Trigger: GGGGTGGAACCTTCTTGTGGGGTTAGGGAGTCTCCAAACCTTAACCAAGCTGGCTCCTCCTGTGCCAACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp AAAGGCCCAATTTGGCAACAGAGAAACATGGCAGCGTaGATAAGACAGAAGTGGGGAGCAGCAGGCAGGGCC +
Preference number: 3 (lower is better)
Translates to: KGPIWQQRNMAA*IRQKWGAAGRA
Trigger: GGCCCTGCCTGCTGCTCCCCACTTCTGTCTTATCCACGCTGCCATGTTTCTCTGTTGCCAAATTGGGCCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp AAGCTGACCAGTAAAGAGGGTTCTATGAAAGGCACTTaGGTGTCCACTGTTCTCAGACGGGGGTGGGTGGGT +
Preference number: 3 (lower is better)
Translates to: KLTSKEGSMKGT*VSTVLRRGWVG
Trigger: ACCCACCCACCCCCGTCTGAGAACAGTGGACACCCAAGTGCCTTTCATAGAACCCTCTTTACTGGTCAGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp ACAGGGAAGGAGGAGTTGGCACAGGAGGAGCCAGCTTaGTTAAGGTTTGGAGACTCCCTAACCCCACAAGAA +
Preference number: 3 (lower is better)
Translates to: TGKEELAQEEPA*LRFGDSLTPQE
Trigger: TTCTTGTGGGGTTAGGGAGTCTCCAAACCTTAACCAAGCTGGCTCCTCCTGTGCCAACTCCTCCTTCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp GCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTaGGAGTTCGTTTTCTCTTTCCATCACGTGGGCTCT +
Preference number: 3 (lower is better)
Translates to: AMVHVRRSEDNL*EFVFSFHHVGS
Trigger: AGAGCCCACGTGATGGAAAGAGAAAACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CAA 90 bp GGCGGAATAGGAGGGGGTCTAGCTTTCTCTTTAGTTATCACTCTGAGGTGCTCAGGGAAAGGGGAGAAATaGGTTCCTCTCAGGTCAGCC +
Preference number: 3 (lower is better)
Translates to: GGIGGGLAFSLVITLRCSGKGEK*VPLRSA
Trigger: GGCTGACCTGAGAGGAACCAATTTCTCCCCTTTCCC...TGAGCACCTCAGAGTGATAACTAAAGAGAAAGCTAGACCCCCTCCTATTCCGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR-3UTR CAA 90 bp GCCCAGGGAAGGGTTAAGGAAGAGTGTCTTGTTCTCACCCTTTCCTTTCTCCTTAAGAGGGGAAGAAGTTaGAAGGCACTGACACAGGGG +
Preference number: 3 (lower is better)
Translates to: AQGRVKEECLVLTLSFLLKRGRS*KALTQG
Trigger: CCCCTGTGTCAGTGCCTTCAAACTTCTTCCCCTCTT...AAGGAGAAAGGAAAGGGTGAGAACAAGACACTCTTCCTTAACCCTTCCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR GCA 72 bp CAACCCCCTCCCACTAAGCTGGTGGGACTAGCTCACTaGTGGGCACTGAAGGTACTCAATAAATGTCTTTTG +
Preference number: 3 (lower is better)
Translates to: QPPPTKLVGLAH*WALKVLNKCLL
Trigger: CAAAAGACATTTATTGAGTACCTTCAGTGCCCAGCAGTGAGCTAGTCCCACCAGCTTAGTGGGAGGGGGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp TTCTCTCCCTTCACCAACCCCCTTGGCACTTGTTTGTaGGTTCACTTAACCCTCATAATCTGGGGAGAGAGC +
Preference number: 3 (lower is better)
Translates to: FSPFTNPLGTCL*VHLTLIIWGES
Trigger: GCTCTCTCCCCAGATTATGAGGGTTAAGTGAACCCACAAACAAGTGCCAAGGGGGTTGGTGAAGGGAGAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR CCA 72 bp CCACCCCCTGTTGATACTCTGAAGGCACGTGACATCTaGGGTTTAGAGGCACCTAAAAATGAAGCAGAGACA +
Preference number: 3 (lower is better)
Translates to: PPPVDTLKARDI*GLEAPKNEAET
Trigger: TGTCTCTGCTTCATTTTTAGGTGCCTCTAAACCCCAGATGTCACGTGCCTTCAGAGTATCAACAGGGGGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR TCA 72 bp CCCTCTTGGCTAACTTCCTCCTGTCCAGCAGGGTTATaGAAAATAGTCAAAACTGCAGTCACAGATGTGAGA +
Preference number: 3 (lower is better)
Translates to: PSWLTSSCPAGL*KIVKTAVTDVR
Trigger: TCTCACATCTGTGACTGCAGTTTTGACTATTTTTCATAACCCTGCTGGACAGGAGGAAGTTAGCCAAGAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
3UTR GCA 72 bp CTCCTGTCCAGCAGGGTTATGAAAAATAGTCAAAACTaGAGTCACAGATGTGAGACATTCTCGCACTTCAGG +
Preference number: 3 (lower is better)
Translates to: LLSSRVMKNSQN*SHRCETFSHFR
Trigger: CCTGAAGTGCGAGAATGTCTCACATCTGTGACTGCAGTTTTGACTATTTTTCATAACCCTGCTGGACAGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CCA 90 bp TCCTGCCCACGTACAAACTGGTGGGGCACCGTCATCCCAGGAGGGAGGAGGGAACAGCAGAAGAGGGAGTaGAGGATGCCCCGACTCCGG +
Preference number: 4 (lower is better)
Translates to: SCPRTNWWGTVIPGGRREQQKRE*RMPRLR
Trigger: CCGGAGTCGGGGCATCCTCCACTCCCTCTTCTGCTG...TTCCCTCCTCCCTCCTGGGATGACGGTGCCCCACCAGTTTGTACGTGGGCAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR GCA 90 bp TCCTGCCCACGTACAAACTGGTGGGGCACCGTCATCCCAGGAGGGAGGAGGGAAGGCTTGAAGGAGCTGTaGACCAGGGTCTCGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SCPRTNWWGTVIPGGRREGLKEL*TRVSSR
Trigger: CCTGGACGAGACCCTGGTGCACAGCTCCTTCAAGCC...TTCCCTCCTCCCTCCTGGGATGACGGTGCCCCACCAGTTTGTACGTGGGCAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CCA 90 bp CAGCCTTGGACAAGCTGGACAGGGAGCGTTCCTCCCGAGGAAGGTCCCCAGCTCCGACTCCGGGGCTTCTaGGAAACTGCTGACTTCTGG +
Preference number: 4 (lower is better)
Translates to: QPWTSWTGSVPPEEGPQLRLRGF*ETADFW
Trigger: CCAGAAGTCAGCAGTTTCCCAGAAGCCCCGGAGTCG...GAGCTGGGGACCTTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR TCA 90 bp TTCAGCCTTGGACAAGCTGGACAGGGAGCGTTCCTCCCGAGGAAGGTCCCCAGCTCTCGTCCAGGTCGATaGCGACGCAGATCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: FSLGQAGQGAFLPRKVPSSRPGR*RRRSCL
Trigger: CAGACAAGATCTGCGTCGTCATCGACCTGGACGAGA...GCTGGGGACCTTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR TCA 90 bp TTCAGCCTTGGACAAGCTGGACAGGGAGCGTTCCTCCCGAGGAAGGTCCCCAGCCATTGTTCACTGGCTTaGAGGAGCTGTGCACCAGGG +
Preference number: 4 (lower is better)
Translates to: FSLGQAGQGAFLPRKVPSHCSLA*RSCAPG
Trigger: CCCTGGTGCACAGCTCCTTCAAGCCAGTGAACAATG...GCTGGGGACCTTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR TCA 90 bp CTTGGGTGTCCACTGTTCTCAGACGGGGGTGGGTGGGTGGGTGGGGAATCCAAGCTTCTGGGAAACTGCTaGCTTCTGGTCACCTTTGCC +
Preference number: 4 (lower is better)
Translates to: LGCPLFSDGGGWVGGESKLLGNC*LLVTFA
Trigger: GGCAAAGGTGACCAGAAGTCAGCAGTTTCCCAGAAG...CTTGGATTCCCCACCCACCCACCCACCCCCGTCTGAGAACAGTGGACACCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR GCA 90 bp GCCCAGGGAAGGGTTAAGGAAGAGTGTCTTGTTCTCACCCTTTCCTTTCTCCTTACTTCTGGTCACCTTTaGCCCGCAGCGGGCCCCGCG +
Preference number: 4 (lower is better)
Translates to: AQGRVKEECLVLTLSFLLTSGHL*PAAGPA
Trigger: CGCGGGGCCCGCTGCGGGGCAAAGGTGACCAGAAGT...AAGGAGAAAGGAAAGGGTGAGAACAAGACACTCTTCCTTAACCCTTCCCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR TCA 90 bp GCCCAGGGAAGGGTTAAGGAAGAGTGTCTTGTTCTCACCCTTTCCTTTCTCCTTGACGCAGATCTTGTCTaGGTCCTGGGCCTTGGCCTC +
Preference number: 4 (lower is better)
Translates to: AQGRVKEECLVLTLSFLLDADLV*VLGLGL
Trigger: GAGGCCAAGGCCCAGGACTCAGACAAGATCTGCGTC...AAGGAGAAAGGAAAGGGTGAGAACAAGACACTCTTCCTTAACCCTTCCCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR TCA 90 bp GCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTTTCTCTAGGCTGTCTGAGCACTaGGTATACGTCGTCCACGCG +
Preference number: 4 (lower is better)
Translates to: AMVHVRRSEDNLWEFVFSRLSEH*VYVVHA
Trigger: CGCGTGGACGACGTATACTCAGTGCTCAGACAGCCT...AGAGAAAACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CCA 90 bp GGCGGAATAGGAGGGGGTCTAGCTTTCTCTTTAGTTATCACTCTGAGGTGCTCACTGAGTCCTGGGCCTTaGCCTCGGGAAGCAGGTACT +
Preference number: 4 (lower is better)
Translates to: GGIGGGLAFSLVITLRCSLSPGP*PREAGT
Trigger: AGTACCTGCTTCCCGAGGCCAAGGCCCAGGACTCAG...TGAGCACCTCAGAGTGATAACTAAAGAGAAAGCTAGACCCCCTCCTATTCCGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CCA 90 bp GCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTTTCTCTACTCTCGAAACAGCCTaGCACGGAAGGCTCCCCACT +
Preference number: 4 (lower is better)
Translates to: AMVHVRRSEDNLWEFVFSTLETA*HGRLPT
Trigger: AGTGGGGAGCCTTCCGTGCCAGGCTGTTTCGAGAGT...AGAGAAAACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CCA 90 bp GCTCGTGCCATGGTGCATGTGAGGAGGTCAGAGGACAACTTGTGGGAGTTCGTTTGGTACGGCATTGTCTaGATGGAAGACATAGGAGGC +
Preference number: 4 (lower is better)
Translates to: ARAMVHVRRSEDNLWEFVWYGIV*MEDIGG
Trigger: GCCTCCTATGTCTTCCATCCAGACAATGCCGTACCA...AACGAACTCCCACAAGTTGTCCTCTGACCTCCTCACATGCACCATGGCACGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR TCA 90 bp GCCCAGGGAAGGGTTAAGGAAGAGTGTCTTGTTCTCACCCTTTCCTTTCTCCTTTCCTCCTTGCTGATCTaGGTAATGACGGCCGAGCTG +
Preference number: 4 (lower is better)
Translates to: AQGRVKEECLVLTLSFLLSSLLI*VMTAEL
Trigger: CAGCTCGGCCGTCATTACTCAGATCAGCAAGGAGGA...AAGGAGAAAGGAAAGGGTGAGAACAAGACACTCTTCCTTAACCCTTCCCTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR TCA 90 bp GGCGGAATAGGAGGGGGTCTAGCTTTCTCTTTAGTTATCACTCTGAGGTGCTCAGTGAGTTGTCTAGAATaGGCACTCGCCGCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: GGIGGGLAFSLVITLRCSVSCLE*ALAAGL
Trigger: GAGACCTGCGGCGAGTGCTCATTCTAGACAACTCAC...TGAGCACCTCAGAGTGATAACTAAAGAGAAAGCTAGACCCCCTCCTATTCCGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CCA 90 bp GCCCAGGGAAGGGTTAAGGAAGAGTGTCTTGTTCTCACCCTTTCCTTTCTCCTTGAAACTGCTGACTTCTaGTCACCTTTGCCCCGCAGC +
Preference number: 4 (lower is better)
Translates to: AQGRVKEECLVLTLSFLLETADF*SPLPRS
Trigger: GCTGCGGGGCAAAGGTGACCAGAAGTCAGCAGTTTC...AAGGAGAAAGGAAAGGGTGAGAACAAGACACTCTTCCTTAACCCTTCCCTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR GCA 90 bp TCCAGCAGGGTTATGAAAAATAGTCAAAACTGCAGTCACAGATGTGAGACATTCAGAGGGAGTGGAGGATaGCCCGACTCCGGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: SSRVMKNSQNCSHRCETFRGSGG*PDSGAS
Trigger: AGAAGCCCCGGAGTCGGGGCATCCTCCACTCCCTCT...GAATGTCTCACATCTGTGACTGCAGTTTTGACTATTTTTCATAACCCTGCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CAA 90 bp CAGCCTTGGACAAGCTGGACAGGGAGCGTTCCTCCCGAGGAAGGTCCCCAGCTCACAGGGTCTGCGTACTaGGCAAGGCTGGCAGTGAAC +
Preference number: 5 (lower is better)
Translates to: QPWTSWTGSVPPEEGPQLTGSAY*ARLAVN
Trigger: GTTCACTGCCAGCCTTGCCAAGTACGCAGACCCTGT...GAGCTGGGGACCTTCCTCGGGAGGAACGCTCCCTGTCCAGCTTGTCCAAGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS CCA 90 bp AGGGTCTCGTCCAGGTCGATGACGACGCAGATCTTGTCTGAGTCCTaGGCCTTGGCCTCGGGAAGCAGGTACTGGACTGGGGTGTGCTTA +
Preference number: 5 (lower is better)
Translates to: RVSSRSMTTQILSES*ALASGSRYWTGVCL
Trigger: TAAGCACACCCCAGTCCAGTACCTGCTTCCCGAGGCCAAGGCCCAGGACTCAGACAAGATCTGCGTCGTCATCGACCTGGACGAGACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027367.14
ENSMUST00000152659.2
CDS-3UTR CAA 90 bp GCCCAGGGAAGGGTTAAGGAAGAGTGTCTTGTTCTCACCCTTTCCTTTCTCCTTGACTTCTGGTCACCTTaGCCCCGCAGCGGGCCCCGC +
Preference number: 5 (lower is better)
Translates to: AQGRVKEECLVLTLSFLLDFWSP*PRSGPR
Trigger: GCGGGGCCCGCTGCGGGGCAAAGGTGACCAGAAGTC...AAGGAGAAAGGAAAGGGTGAGAACAAGACACTCTTCCTTAACCCTTCCCTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CAA 90 bp GCACGTGACATCTGGGGTTTAGAGGCACCTAAAAATGAAGCAGAGACAACCCCCGCATTGTTCACTGGCTaGAAGGAGCTGTGCACCAGG +
Preference number: 5 (lower is better)
Translates to: ARDIWGLEAPKNEAETTPALFTG*KELCTR
Trigger: CCTGGTGCACAGCTCCTTCAAGCCAGTGAACAATGC...GGGGGTTGTCTCTGCTTCATTTTTAGGTGCCTCTAAACCCCAGATGTCACGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CAA 90 bp CAGAACTGGGGCGAAAAGGCCCAATTTGGCAACAGAGAAACATGGCAGCGTGGATCAGTGTCACTCATGTaGTCAAACCACGAGGCCACT +
Preference number: 5 (lower is better)
Translates to: QNWGEKAQFGNRETWQRGSVSLM*SNHEAT
Trigger: AGTGGCCTCGTGGTTTGACAACATGAGTGACACTGA...TCCACGCTGCCATGTTTCTCTGTTGCCAAATTGGGCCTTTTCGCCCCAGTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CAA 90 bp GCACGTGACATCTGGGGTTTAGAGGCACCTAAAAATGAAGCAGAGACAACCCCCATGATGAAGTCCGCATaGTTCACTGGCTTGAAGGAG +
Preference number: 5 (lower is better)
Translates to: ARDIWGLEAPKNEAETTPMMKSA*FTGLKE
Trigger: CTCCTTCAAGCCAGTGAACAATGCGGACTTCATCAT...GGGGGTTGTCTCTGCTTCATTTTTAGGTGCCTCTAAACCCCAGATGTCACGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS-3UTR CAA 90 bp TCCAGCAGGGTTATGAAAAATAGTCAAAACTGCAGTCACAGATGTGAGACATTCATGACGACGCAGATCTaGTCTGAGTCCTGGGCCTTG +
Preference number: 5 (lower is better)
Translates to: SSRVMKNSQNCSHRCETFMTTQI*SESWAL
Trigger: CAAGGCCCAGGACTCAGACAAGATCTGCGTCGTCAT...GAATGTCTCACATCTGTGACTGCAGTTTTGACTATTTTTCATAACCCTGCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS CAA 90 bp GAGCTGTGCACCAGGGTCTCGTCCAGGTCGATGACGACGCAGATCTaGTCTGAGTCCTGGGCCTTGGCCTCGGGAAGCAGGTACTGGACT +
Preference number: 6 (lower is better)
Translates to: ELCTRVSSRSMTTQI*SESWALASGSRYWT
Trigger: AGTCCAGTACCTGCTTCCCGAGGCCAAGGCCCAGGACTCAGACAAGATCTGCGTCGTCATCGACCTGGACGAGACCCTGGTGCACAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027367.14
ENSMUST00000152659.2
CDS TCA 72 bp GAGGATGCCCCGACTCCGGGGCTTCTGGGAAACTGCTaGCTTCTGGTCACCTTCTCGTCCCATTGGCGCCAA +
Preference number: 6 (lower is better)
Translates to: EDAPTPGLLGNC*LLVTFSSHWRQ
Trigger: TTGGCGCCAATGGGACGAGAAGGTGACCAGAAGTCAGCAGTTTCCCAGAAGCCCCGGAGTCGGGGCATCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152659.2
CDS CCA 72 bp TCCAGGTCGATGACGACGCAGATCTTGTCTGAGTCCTaGGCCTTGGCCTCGGGAAGCAGGTACTGGACTGGG +
Preference number: 6 (lower is better)
Translates to: SRSMTTQILSES*ALASGSRYWTG
Trigger: CCCAGTCCAGTACCTGCTTCCCGAGGCCAAGGCCCAGGACTCAGACAAGATCTGCGTCGTCATCGACCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027367.14
ENSMUST00000152659.2
CDS CCA 72 bp TCCCCCGGTGGAAGACACACGACTCTCGAAACAGCCTaGCACGGAAGGCTCCCCACTTGTCCAGCAGATCAG +
Preference number: 6 (lower is better)
Translates to: SPGGRHTTLETA*HGRLPTCPADQ
Trigger: CTGATCTGCTGGACAAGTGGGGAGCCTTCCGTGCCAGGCTGTTTCGAGAGTCGTGTGTCTTCCACCGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14
CDS CCA 72 bp AAGAGGGAGTGGAGGATGCCCCGACTCCGGGGCTTCTaGGAAACTGCTGACTTCTGGTCACCTTCTCGTCCC +
Preference number: 6 (lower is better)
Translates to: KREWRMPRLRGF*ETADFWSPSRP
Trigger: GGGACGAGAAGGTGACCAGAAGTCAGCAGTTTCCCAGAAGCCCCGGAGTCGGGGCATCCTCCACTCCCTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152659.2
CDS CAA 90 bp TCGTCCAGGTCGATGACGACGCAGATCTTGTCTGAGTCCTGGGCCTaGGCCTCGGGAAGCAGGTACTGGACTGGGGTGTGCTTAGGGATG +
Preference number: 6 (lower is better)
Translates to: SSRSMTTQILSESWA*ASGSRYWTGVCLGM
Trigger: CATCCCTAAGCACACCCCAGTCCAGTACCTGCTTCCCGAGGCCAAGGCCCAGGACTCAGACAAGATCTGCGTCGTCATCGACCTGGACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027367.14
ENSMUST00000152659.2
CDS GCA 72 bp ATGAAGTCCGCATTGTTCACTGGCTTGAAGGAGCTGTaGACCAGGGTCTCGTCCAGGTCGATGACGACGCAG +
Preference number: 6 (lower is better)
Translates to: MKSALFTGLKEL*TRVSSRSMTTQ
Trigger: CTGCGTCGTCATCGACCTGGACGAGACCCTGGTGCACAGCTCCTTCAAGCCAGTGAACAATGCGGACTTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027367.14
ENSMUST00000152659.2
CDS CAA 72 bp AAGGGTAAGAGATCGTGTAGCTCAGTGTCACTCATGTaGTCAAACCACGAGGCCACTGGTACGGCATTGTCT +
Preference number: 6 (lower is better)
Translates to: KGKRSCSSVSLM*SNHEATGTALS
Trigger: AGACAATGCCGTACCAGTGGCCTCGTGGTTTGACAACATGAGTGACACTGAGCTACACGATCTCTTACCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027367.14