RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CTBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037373

Ensembl transcript IDs: ENSMUST00000079746.10, ENSMUST00000201275.4, ENSMUST00000201372.3, ENSMUST00000201575.4, ENSMUST00000202820.4, ENSMUST00000202868.4, ENSMUST00000202962.4

Found 257 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCTCCCCCAGGACAGACCCCGGTGGTCCTGAGCACCCTGGGCACTaGAGACGCCTCGGAGCCACTCGTGATGCCGCCTTCACTTGGAAC +
Preference number: 1 (lower is better)
Translates to: ASPRTDPGGPEHPGH*RRLGATRDAAFTWN
Trigger: GTTCCAAGTGAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGGGTCTGTCCTGGGGGAGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR GCA 90 bp CGGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTaGACACTTGGGTCCAAGAGCGTGCAGCACCCTCCACCAGGTGCC +
Preference number: 1 (lower is better)
Translates to: RASLWSARAHTGCHL*TLGSKSVQHPPPGA
Trigger: GGCACCTGGTGGAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR CCA 90 bp ACGTGCTTCCTCTTGCCCCGCCTAGTGCACGCCCGGGCCAGTCTCTaGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGG +
Preference number: 1 (lower is better)
Translates to: TCFLLPRLVHARASL*SARAHTGCHLCTLG
Trigger: CCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGTGCACTAGGCGGGGCAAGAGGAAGCACGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR GCA 90 bp AGGCCGCAATGCAGGGTAACGCAGTCACTGTGGAAGAGCAGGTCCTaGAGCGTGCTCACGCGCTGTAGCCCCAGGGCCCGCTCGATTCCA +
Preference number: 1 (lower is better)
Translates to: RPQCRVTQSLWKSRS*SVLTRCSPRARSIP
Trigger: TGGAATCGAGCGGGCCCTGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CCA 90 bp TTCCACAGCAGCTGGGATGCCAGTGGGGGCCACACTCACGACGCCTaGAGGGTACCTGCTGAGAGAGGAGGGCAGACGTGTGAGCTCTAC +
Preference number: 1 (lower is better)
Translates to: FHSSWDASGGHTHDA*RVPAERGGQTCELY
Trigger: GTAGAGCTCACACGTCTGCCCTCCTCTCTCAGCAGGTACCCTCCAGGCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp CCTTTGCCCGAAGTGCCACCGCCTGGCCCACACGACCTAGTCCAATaGTGCCCAAGGTCTCTCCACGGATCCTGGCAGCTCCTGAAGCCA +
Preference number: 1 (lower is better)
Translates to: PLPEVPPPGPHDLVQ*CPRSLHGSWQLLKP
Trigger: TGGCTTCAGGAGCTGCCAGGATCCGTGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGGCAAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR TCA 90 bp CAGGCTACAACTGGTCACTCGTATGGTCTCTATCCGCCTCAGGCTTaGCAGTCTGGCCAGGAGAGGGAGCGTGGGGTGGGTGGGCCACAG +
Preference number: 1 (lower is better)
Translates to: QATTGHSYGLYPPQA*QSGQERERGVGGPQ
Trigger: CTGTGGCCCACCCACCCCACGCTCCCTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAGAGACCATACGAGTGACCAGTTGTAGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp GGAGCCCCAAGAAGGAAGTCAGCCCAGACTGGACTAGAGGCTGCATaGGAAGCCAAGCTAGTGTATGCCTTGGCCCCGCTGAGTCTGGGG +
Preference number: 1 (lower is better)
Translates to: GAPRRKSAQTGLEAA*EAKLVYALAPLSLG
Trigger: CCCCAGACTCAGCGGGGCCAAGGCATACACTAGCTTGGCTTCGCATGCAGCCTCTAGTCCAGTCTGGGCTGACTTCCTTCTTGGGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp CCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCCACCAGGTaGCAAGGCTGGACAGCTCCTCACAGGCTACAACTGGTCACTCGT +
Preference number: 1 (lower is better)
Translates to: PLHTWVQERAAPSTR*QGWTAPHRLQLVTR
Trigger: ACGAGTGACCAGTTGTAGCCTGTGAGGAGCTGTCCAGCCTTGGCACCTGGTGGAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 90 bp TGGTTGTGCTCATTGAGGCCGCAATGCAGGGTAACGCAGTCACTGTaGAAGAGCAGGTCCTGCAGCGTGCTCACGCGCTGTAGCCCCAGG +
Preference number: 1 (lower is better)
Translates to: WLCSLRPQCRVTQSL*KSRSCSVLTRCSPR
Trigger: CCTGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGAGCACAACCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CCA 90 bp ATGAGACAGGGACATGGCACTGGGAACAATCCCTTCCACAGCAGCTaGGATGCCAGTGGGGGCCACACTCACGACGCCTGGAGGGTACCT +
Preference number: 1 (lower is better)
Translates to: MRQGHGTGNNPFHSS*DASGGHTHDAWRVP
Trigger: AGGTACCCTCCAGGCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGGATTGTTCCCAGTGCCATGTCCCTGTCTCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp AGCCCAGACTGGACTAGAGGCTGCATGCGAAGCCAAGCTAGTGTATaGCTTGGCCCCGCTGAGTCTGGGGACCATGGGACCATCATGGAC +
Preference number: 1 (lower is better)
Translates to: SPDWTRGCMRSQASV*LGPAESGDHGTIMD
Trigger: GTCCATGATGGTCCCATGGTCCCCAGACTCAGCGGGGCCAAGGCATACACTAGCTTGGCTTCGCATGCAGCCTCTAGTCCAGTCTGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp TGCTGGAGCCCCAAGAAGGAAGTCAGCCCAGACTGGACTAGAGGCTaGATGCGAAGCCAAGCTAGTGTATGCCTTGGCCCCGCTGAGTCT +
Preference number: 1 (lower is better)
Translates to: CWSPKKEVSPDWTRG*MRSQASVCLGPAES
Trigger: AGACTCAGCGGGGCCAAGGCATACACTAGCTTGGCTTCGCATGCAGCCTCTAGTCCAGTCTGGGCTGACTTCCTTCTTGGGGCTCCAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp CCAGGTTTAAGCCTCATTGTCTTGCAGACTGTCCCCTCCCTTGCCTaGTCACCTGTAGGCAGCCCCATTGAGCTCAGGGTGCACCACAGC +
Preference number: 1 (lower is better)
Translates to: PGLSLIVLQTVPSLA*SPVGSPIELRVHHS
Trigger: GCTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACAGGTGAGCAGGCAAGGGAGGGGACAGTCTGCAAGACAATGAGGCTTAAACCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 90 bp ACCACAGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTaGTCCTTGTTGACACAGTTTTTCAAGCTATCTGGGATCCGGCCT +
Preference number: 1 (lower is better)
Translates to: TTAGSMLAQCVAAVR*SLLTQFFKLSGIRP
Trigger: AGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 90 bp GCCAAGGCTGGACAGCTCCTCACAGGCTACAACTGGTCACTCGTATaGTCTCTATCCGCCTCAGGCTTGACAGTCTGGCCAGGAGAGGGA +
Preference number: 1 (lower is better)
Translates to: AKAGQLLTGYNWSLV*SLSASGLTVWPGEG
Trigger: TCCCTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAGAGACCATACGAGTGACCAGTTGTAGCCTGTGAGGAGCTGTCCAGCCTTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp GGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTTaGCACAGTTTTTCAAGCTATCTGGGATCCGGCCTAGGATGTTGG +
Preference number: 1 (lower is better)
Translates to: GPCWPSAWRLSGGPC*HSFSSYLGSGLGCW
Trigger: CCAACATCCTAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 90 bp GGCTTTGTCAGCTGCTGGAGCCCCAAGAAGGAAGTCAGCCCAGACTaGACTAGAGGCTGCATGCGAAGCCAAGCTAGTGTATGCCTTGGC +
Preference number: 1 (lower is better)
Translates to: GFVSCWSPKKEVSPD*TRGCMRSQASVCLG
Trigger: GCCAAGGCATACACTAGCTTGGCTTCGCATGCAGCCTCTAGTCCAGTCTGGGCTGACTTCCTTCTTGGGGCTCCAGCAGCTGACAAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp AAGGGTCCCTGGCTAAAGCTGAGGATAGCACATACCCAGTCAGAGTaGTCTGAGCACCCAAGTCTGGGAGGTGCAGAAGGCAACCAGCCC +
Preference number: 1 (lower is better)
Translates to: KGPWLKLRIAHTQSE*SEHPSLGGAEGNQP
Trigger: GGGCTGGTTGCCTTCTGCACCTCCCAGACTTGGGTGCTCAGATCACTCTGACTGGGTATGTGCTATCCTCAGCTTTAGCCAGGGACCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp CACAGCCTGGCTTCTCACATGAGGTCTTCCCCAAGCCCCATTCCCTaGCTCCTTACTACTCTCTGGCCCAACAACAGTTCTGCCCAGCAG +
Preference number: 1 (lower is better)
Translates to: HSLASHMRSSPSPIP*LLTTLWPNNSSAQQ
Trigger: CTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGGGAATGGGGCTTGGGGAAGACCTCATGTGAGAAGCCAGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 90 bp TACACCAGAGAGAGACAGCAATGTGGATTAAAACTGCTGCCTCTGTaGGGGCCAAGAGGCAGACCCAGAGCCACCTTCTTGCCACAGCCC +
Preference number: 1 (lower is better)
Translates to: YTRERQQCGLKLLPL*GPRGRPRATFLPQP
Trigger: GGGCTGTGGCAAGAAGGTGGCTCTGGGTCTGCCTCTTGGCCCCCACAGAGGCAGCAGTTTTAATCCACATTGCTGTCTCTCTCTGGTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp CCCGCTCGATTCCATCAGATAGGTATGGATCATAGAAGAGGACGTTaGAGCCAAAAGCCTTTGCCCGAAGTGCCACCGCCTGGCCCACAC +
Preference number: 1 (lower is better)
Translates to: PARFHQIGMDHRRGR*SQKPLPEVPPPGPH
Trigger: GTGTGGGCCAGGCGGTGGCACTTCGGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATGATCCATACCTATCTGATGGAATCGAGCGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CCA 90 bp TCCGGCCTAGGATGTTGGAAGGTACACCAGAGAGAGACAGCAATGTaGATTAAAACTGCTGCCTCTGTGGGGGCCAAGAGGCAGACCCAG +
Preference number: 1 (lower is better)
Translates to: SGLGCWKVHQRETAM*IKTAASVGAKRQTQ
Trigger: CTGGGTCTGCCTCTTGGCCCCCACAGAGGCAGCAGTTTTAATCCACATTGCTGTCTCTCTCTGGTGTACCTTCCAACATCCTAGGCCGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp CTAATCACTCAACTGGTCTGCTATCCCTTGATGGGCTTTGTCAGCTaGTGGAGCCCCAAGAAGGAAGTCAGCCCAGACTGGACTAGAGGC +
Preference number: 1 (lower is better)
Translates to: LITQLVCYPLMGFVS*WSPKKEVSPDWTRG
Trigger: GCCTCTAGTCCAGTCTGGGCTGACTTCCTTCTTGGGGCTCCAGCAGCTGACAAAGCCCATCAAGGGATAGCAGACCAGTTGAGTGATTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp CCCCATTCCCTGACTCCTTACTACTCTCTGGCCCAACAACAGTTCTaGCCAGCAGTCCTGTCTAGGAGGCCAAACCTCTTACCCCAAGAA +
Preference number: 1 (lower is better)
Translates to: PHSLTPYYSLAQQQF*PAVLSRRPNLLPQE
Trigger: TTCTTGGGGTAAGAGGTTTGGCCTCCTAGACAGGACTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGGGAATGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp CACAGCCCTGGCTTACTCCCCAGGAACATCATAGGACCATCCACCTaGAAAGTCAGCTTCCAACCTGGAGACCTTAGCCCCATACATGTG +
Preference number: 1 (lower is better)
Translates to: HSPGLLPRNIIGPST*KVSFQPGDLSPIHV
Trigger: CACATGTATGGGGCTAAGGTCTCCAGGTTGGAAGCTGACTTTTCAGGTGGATGGTCCTATGATGTTCCTGGGGAGTAAGCCAGGGCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp CCACCTGCTGCACACAGCCCTTTCTGTATGGTTATCAATGACCCCTaGGGTCCAGAAAAGTTGGAGGCAGTAAGCACTTGGTCAGTGCTG +
Preference number: 1 (lower is better)
Translates to: PPAAHSPFCMVINDP*GPEKLEAVSTWSVL
Trigger: CAGCACTGACCAAGTGCTTACTGCCTCCAACTTTTCTGGACCTCAGGGGTCATTGATAACCATACAGAAAGGGCTGTGTGCAGCAGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp CAGAGACCCACCTGCTGCACACAGCCCTTTCTGTATGGTTATCAATaGCCCCTGAGGTCCAGAAAAGTTGGAGGCAGTAAGCACTTGGTC +
Preference number: 1 (lower is better)
Translates to: QRPTCCTQPFLYGYQ*PLRSRKVGGSKHLV
Trigger: GACCAAGTGCTTACTGCCTCCAACTTTTCTGGACCTCAGGGGTCATTGATAACCATACAGAAAGGGCTGTGTGCAGCAGGTGGGTCTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 90 bp CTGGAGACCTTAGCCCCATACATGTGCTCTCAGCTCACAAGCAGCTaGTGGCATCCAGCACAGCAGGTCTTCATGTACGAAAATGATGTG +
Preference number: 1 (lower is better)
Translates to: LETLAPYMCSQLTSS*WHPAQQVFMYENDV
Trigger: CACATCATTTTCGTACATGAAGACCTGCTGTGCTGGATGCCATCAGCTGCTTGTGAGCTGAGAGCACATGTATGGGGCTAAGGTCTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 90 bp ACACAGACAAGAACATTCGTGATAGAATTAGCTACTAACTTCTTTTaGTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCC +
Preference number: 1 (lower is better)
Translates to: TQTRTFVIELATNFF*LNEERKGHRTVSQP
Trigger: GGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGTTCTTGTCTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR-3UTR TCA 90 bp ACCCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGAAGGACACAGGACAGTaGGCCAGCCCACAGGACGGG +
Preference number: 2 (lower is better)
Translates to: TPVVLSTLGTADASEPLVKDTGQ*ASPQDG
Trigger: CCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTT...CACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR-3UTR TCA 90 bp CCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTTCAAGGACACAGGACAGTaGGCCAGCCCACAGGACGGG +
Preference number: 2 (lower is better)
Translates to: PEHPGHCRRLGATRDAAFKDTGQ*ASPQDG
Trigger: CCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTT...GAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR-3UTR CCA 90 bp GCACCACAGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTGGATGGGAGGGCCCCTaGCCTTTCCCAAGGCATCTG +
Preference number: 2 (lower is better)
Translates to: APQQGPCWPSAWRLSGGPGWEGP*PFPRHL
Trigger: CAGATGCCTTGGGAAAGGCCAGGGGCCCTCCCATCC...AGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR TCA 90 bp AGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTTGACAAGGACACAGGACAGTaGGCCAGCCCACAGGACGGG +
Preference number: 2 (lower is better)
Translates to: SRVHAGPVRGGCQVVLVDKDTGQ*ASPQDG
Trigger: CCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTT...GTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp CTCACGACGCCTGGAGGGTACCTGCTGAGAGAGGAGGGCAGACGTGTGAGCTCTGGAAGAGCCCTGCTGTaGTGCTGGCACAGCCCTGCC +
Preference number: 2 (lower is better)
Translates to: LTTPGGYLLREEGRRVSSGRALL*CWHSPA
Trigger: GGCAGGGCTGTGCCAGCACCACAGCAGGGCTCTTCC...AGAGCTCACACGTCTGCCCTCCTCTCTCAGCAGGTACCCTCCAGGCGTCGTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CAA 90 bp GTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTaGGGTCCAAGAGCGTGCAGCACCCTCCACCAGGTGCCAAGGCTG +
Preference number: 2 (lower is better)
Translates to: VSGVLGPTLDATSAH*GPRACSTLHQVPRL
Trigger: CAGCCTTGGCACCTGGTGGAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp AGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTTGACAAACTGCTGCCTCTGTaGGGGCCAAGAGGCAGACCC +
Preference number: 2 (lower is better)
Translates to: SRVHAGPVRGGCQVVLVDKLLPL*GPRGRP
Trigger: GGGTCTGCCTCTTGGCCCCCACAGAGGCAGCAGTTT...GTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR TCA 90 bp CCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTTCAAGGATTCATTGTCCTaGGAAGTGTGCCGACGGCCA +
Preference number: 2 (lower is better)
Translates to: PEHPGHCRRLGATRDAAFKDSLS*EVCRRP
Trigger: TGGCCGTCGGCACACTTCTCAGGACAATGAATCCTT...GAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR-3UTR CCA 90 bp GTGGGGGCCAAGAGGCAGACCCAGAGCCACCTTCTTGCCACAGCCCTGGCTTACCTGAGCACCCAAGTCTaGGAGGTGCAGAAGGCAACC +
Preference number: 2 (lower is better)
Translates to: VGAKRQTQSHLLATALAYLSTQV*EVQKAT
Trigger: GGTTGCCTTCTGCACCTCCCAGACTTGGGTGCTCAG...GTAAGCCAGGGCTGTGGCAAGAAGGTGGCTCTGGGTCTGCCTCTTGGCCCCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CAA 90 bp CTGCTGCCTCTGTGGGGGCCAAGAGGCAGACCCAGAGCCACCTTCTaGCCACAGCCCTGGCTTACTCCCCAGGAACATCATAGGACCATC +
Preference number: 2 (lower is better)
Translates to: LLPLWGPRGRPRATF*PQPWLTPQEHHRTI
Trigger: GATGGTCCTATGATGTTCCTGGGGAGTAAGCCAGGGCTGTGGCAAGAAGGTGGCTCTGGGTCTGCCTCTTGGCCCCCACAGAGGCAGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CAA 90 bp ACAGGCTACAACTGGTCACTCGTATGGTCTCTATCCGCCTCAGGCTaGACAGTCTGGCCAGGAGAGGGAGCGTGGGGTGGGTGGGCCACA +
Preference number: 2 (lower is better)
Translates to: TGYNWSLVWSLSASG*TVWPGEGAWGGWAT
Trigger: TGTGGCCCACCCACCCCACGCTCCCTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAGAGACCATACGAGTGACCAGTTGTAGCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR GCA 90 bp CCTGACTCCTTACTACTCTCTGGCCCAACAACAGTTCTGCCCAGCAGTCCTGTCCCACAGCAGGGTCCATaGTGGCCCAGTGCGTGGCGG +
Preference number: 2 (lower is better)
Translates to: PDSLLLSGPTTVLPSSPVPQQGP*WPSAWR
Trigger: CCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGG...GACAGGACTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR TCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTAAGGACACAGGACAGTaGGCCAGCCCACAGGACGGG +
Preference number: 2 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRKDTGQ*ASPQDG
Trigger: CCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTT...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp CAAGAGGCAGACCCAGAGCCACCTTCTTGCCACAGCCCTGGCTTACTCCCCAGGGGCTTTGTCAGCTGCTaGAGCCCCAAGAAGGAAGTC +
Preference number: 2 (lower is better)
Translates to: QEADPEPPSCHSPGLLPRGFVSC*SPKKEV
Trigger: GACTTCCTTCTTGGGGCTCCAGCAGCTGACAAAGCC...CCTGGGGAGTAAGCCAGGGCTGTGGCAAGAAGGTGGCTCTGGGTCTGCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CAA 90 bp GCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTaGTTGACACAGTTTTTCAAGCTATCTGGGATCCGGCCTAGGATG +
Preference number: 2 (lower is better)
Translates to: AGSMLAQCVAAVRWS*LTQFFKLSGIRPRM
Trigger: CATCCTAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR GCA 90 bp AGTGCCACCGCCTGGCCCACACGACCTAGTCCAATGATGCCCAAGGTCTCTCCAGCCACCTCTCGGATCTaGTCTACACTCTGGACTCGA +
Preference number: 2 (lower is better)
Translates to: SATAWPTRPSPMMPKVSPATSRI*STLWTR
Trigger: TCGAGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGC...TGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CAA 90 bp GGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTaGACACAGTTTTTCAAGCTATCTGGGATCCGGCCTAGGATGTTG +
Preference number: 2 (lower is better)
Translates to: GSMLAQCVAAVRWSL*TQFFKLSGIRPRML
Trigger: CAACATCCTAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR TCA 90 bp AGGCTGGACAGCTCCTCACAGGCTACAACTGGTCACTCGTATGGTCTCTATCCGGCCTGGCTTCTCACATaGGGTCTTCCCCAAGCCCCA +
Preference number: 2 (lower is better)
Translates to: RLDSSSQATTGHSYGLYPAWLLT*GLPQAP
Trigger: TGGGGCTTGGGGAAGACCTCATGTGAGAAGCCAGGC...CGGATAGAGACCATACGAGTGACCAGTTGTAGCCTGTGAGGAGCTGTCCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp CTCACGACGCCTGGAGGGTACCTGCTGAGAGAGGAGGGCAGACGTGTGAGCTCTCTCCTTACTACTCTCTaGCCCAACAACAGTTCTGCC +
Preference number: 2 (lower is better)
Translates to: LTTPGGYLLREEGRRVSSLLTTL*PNNSSA
Trigger: GGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAG...AGAGCTCACACGTCTGCCCTCCTCTCTCAGCAGGTACCCTCCAGGCGTCGTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR TCA 90 bp TGGATCATAGAAGAGGACGTTGAAGCCAAAAGCCTTTGCCCGAAGTGCCACCGCGATCCTGGCAGCTCCTaGAGCCACCTCTCGGATCTG +
Preference number: 2 (lower is better)
Translates to: WIIEEDVEAKSLCPKCHRDPGSS*SHLSDL
Trigger: CAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATC...GCGGTGGCACTTCGGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR-3UTR GCA 90 bp AGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTTGACGGCATAAAACAAACTTaGCAGCCTGATAGCATGGCT +
Preference number: 2 (lower is better)
Translates to: SRVHAGPVRGGCQVVLVDGIKQT*QPDSMA
Trigger: AGCCATGCTATCAGGCTGGCAAGTTTGTTTTATGCC...GTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR GCA 90 bp GTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGGCTACTAACTTCTTTTaGTTAAACGAGGAACGCAAA +
Preference number: 2 (lower is better)
Translates to: VVLSTLGTADASEPLVMPATNFF*LNEERK
Trigger: TTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGC...CGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR-3UTR GCA 90 bp CCTGGGATGGGAGGGCCCCTGGCCTTTCCCAAGGCATCTGAAAAAGTGGAACTGGGACTAGAGGCTGCATaGGAAGCCAAGCTAGTGTAT +
Preference number: 2 (lower is better)
Translates to: PGMGGPLAFPKASEKVELGLEAA*EAKLVY
Trigger: ATACACTAGCTTGGCTTCGCATGCAGCCTCTAGTCC...CAGTTCCACTTTTTCAGATGCCTTGGGAAAGGCCAGGGGCCCTCCCATCCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp TGCTCATTGAGGCCGCAATGCAGGGTAACGCAGTCACTGTGGAAGAGCAGGTCCATCTGCTCTACACTCTaGACTCGAGTGCCTTCCCGA +
Preference number: 2 (lower is better)
Translates to: CSLRPQCRVTQSLWKSRSICSTL*TRVPSR
Trigger: TCGGGAAGGCACTCGAGTCCAGAGTGTAGAGCAGAT...GGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR-3UTR CCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTTTCTTGCCACAGCCCTaGCTTACTCCCCAGGAACAT +
Preference number: 2 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRFLPQP*LTPQEH
Trigger: ATGTTCCTGGGGAGTAAGCCAGGGCTGTGGCAAGAA...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTGTGGCGGCTGTCAGGTaGTCCTTGTTGACACAGTTT +
Preference number: 2 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRVAAVR*SLLTQF
Trigger: AAACTGTGTCAACAAGGACCACCTGACAGCCGCCAC...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR GCA 90 bp GGCCAAACCTCTTACCCCAAGAAAAGTAGACTGTCCCATCCAGCTCAATCCTCTGACTGTCCCCTCCCTTaGCTGCTCACCTGTAGGCAG +
Preference number: 2 (lower is better)
Translates to: GQTSYPKKSRLSHPAQSSDCPLP*LLTCRQ
Trigger: CTGCCTACAGGTGAGCAGGCAAGGGAGGGGACAGTC...AGAGGATTGAGCTGGATGGGACAGTCTACTTTTCTTGGGGTAAGAGGTTTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR TCA 90 bp GGTCCAGAAAAGTTGGAGGCAGTAAGCACTTGGTCAGTGCTGGGCAGCATCACATGGTCTGCTATCCCTTaGTGGGCTTTGTCAGCTGCT +
Preference number: 2 (lower is better)
Translates to: GPEKLEAVSTWSVLGSITWSAIP*WALSAA
Trigger: AGCAGCTGACAAAGCCCATCAAGGGATAGCAGACCA...TGTGATGCTGCCCAGCACTGACCAAGTGCTTACTGCCTCCAACTTTTCTGGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTCAACTACAATCAACTTaGGGACGTGCTTCCTCTTGC +
Preference number: 2 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRQLQST*GRASSC
Trigger: GCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTG...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATCAACTTaGGGACGTGCTTCCTCTTGC +
Preference number: 2 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGQLQST*GRASSC
Trigger: GCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTG...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR CAA 90 bp CACTGTGTTCTTCAGTGGCTAATCACTCAACTGGTCTGCTATCCCTaGATGGGCTTTGTCAGCTGCTGGAGCCCCAAGAAGGAAGTCAGC +
Preference number: 2 (lower is better)
Translates to: HCVLQWLITQLVCYP*MGFVSCWSPKKEVS
Trigger: GCTGACTTCCTTCTTGGGGCTCCAGCAGCTGACAAAGCCCATCAAGGGATAGCAGACCAGTTGAGTGATTAGCCACTGAAGAACACAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR GCA 90 bp CCTGACTCCTTACTACTCTCTGGCCCAACAACAGTTCTGCCCAGCAGTCCTGTCCTGAAAAAGTGGAACTaGAGAACTAGCAAACCTACC +
Preference number: 2 (lower is better)
Translates to: PDSLLLSGPTTVLPSSPVLKKWN*RTSKPT
Trigger: GGTAGGTTTGCTAGTTCTGCAGTTCCACTTTTTCAG...GACAGGACTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CCA 90 bp GGCCAAACCTCTTACCCCAAGAAAAGTAGACTGTCCCATCCAGCTCAATCCTCTAGAGAGACAGCAATGTaGATTAAAACTGCTGCCTCT +
Preference number: 2 (lower is better)
Translates to: GQTSYPKKSRLSHPAQSSRETAM*IKTAAS
Trigger: AGAGGCAGCAGTTTTAATCCACATTGCTGTCTCTCT...AGAGGATTGAGCTGGATGGGACAGTCTACTTTTCTTGGGGTAAGAGGTTTGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 72 bp AGGACAGACCCCGGTGGTCCTGAGCACCCTGGGCACTaGAGACGCCTCGGAGCCACTCGTGATGCCGCCTTC +
Preference number: 3 (lower is better)
Translates to: RTDPGGPEHPGH*RRLGATRDAAF
Trigger: GAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGGGTCTGTCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR CCA 72 bp CTCTTGCCCCGCCTAGTGCACGCCCGGGCCAGTCTCTaGAGTGCTAGGGCCCACACTGGATGCCACCTCTGC +
Preference number: 3 (lower is better)
Translates to: LLPRLVHARASL*SARAHTGCHLC
Trigger: GCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGTGCACTAGGCGGGGCAAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR GCA 72 bp TGCAGGGTAACGCAGTCACTGTGGAAGAGCAGGTCCTaGAGCGTGCTCACGCGCTGTAGCCCCAGGGCCCGC +
Preference number: 3 (lower is better)
Translates to: CRVTQSLWKSRS*SVLTRCSPRAR
Trigger: GCGGGCCCTGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CCA 72 bp GGACATGGCACTGGGAACAATCCCTTCCACAGCAGCTaGGATGCCAGTGGGGGCCACACTCACGACGCCTGG +
Preference number: 3 (lower is better)
Translates to: GHGTGNNPFHSS*DASGGHTHDAW
Trigger: CCAGGCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGGATTGTTCCCAGTGCCATGTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp CTCGTATGGTCTCTATCCGCCTCAGGCTTGACAGTCTaGCCAGGAGAGGGAGCGTGGGGTGGGTGGGCCACA +
Preference number: 3 (lower is better)
Translates to: LVWSLSASGLTV*PGEGAWGGWAT
Trigger: TGTGGCCCACCCACCCCACGCTCCCTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAGAGACCATACGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 72 bp GAAGTGCCACCGCCTGGCCCACACGACCTAGTCCAATaGTGCCCAAGGTCTCTCCACGGATCCTGGCAGCTC +
Preference number: 3 (lower is better)
Translates to: EVPPPGPHDLVQ*CPRSLHGSWQL
Trigger: GAGCTGCCAGGATCCGTGGAGAGACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR GCA 72 bp CTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTaGACACTTGGGTCCAAGAGCGTGCAGCACCCTCCA +
Preference number: 3 (lower is better)
Translates to: LWSARAHTGCHL*TLGSKSVQHPP
Trigger: TGGAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
3UTR GCA 72 bp TGGACTAGAGGCTGCATGCGAAGCCAAGCTAGTGTATaGCTTGGCCCCGCTGAGTCTGGGGACCATGGGACC +
Preference number: 3 (lower is better)
Translates to: WTRGCMRSQASV*LGPAESGDHGT
Trigger: GGTCCCATGGTCCCCAGACTCAGCGGGGCCAAGGCATACACTAGCTTGGCTTCGCATGCAGCCTCTAGTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 72 bp ACTTGGGTCCAAGAGCGTGCAGCACCCTCCACCAGGTaGCAAGGCTGGACAGCTCCTCACAGGCTACAACTG +
Preference number: 3 (lower is better)
Translates to: TWVQERAAPSTR*QGWTAPHRLQL
Trigger: CAGTTGTAGCCTGTGAGGAGCTGTCCAGCCTTGGCACCTGGTGGAGGGTGCTGCACGCTCTTGGACCCAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp GAGGGGATTCTGAGCCTTAGAGGAAGAGCCCTGCTGTaGTGCTGGCACAGCCCTGCCCAGCAGAACAAACCC +
Preference number: 3 (lower is better)
Translates to: EGILSLRGRALL*CWHSPAQQNKP
Trigger: GGGTTTGTTCTGCTGGGCAGGGCTGTGCCAGCACCACAGCAGGGCTCTTCCTCTAAGGCTCAGAATCCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CAA 90 bp CTCACGACGCCTGGAGGGTACCTGCTGAGAGAGGAGGGCAGACGTGTGAGCTCTCTGGTCTGCTATCCCTaGATGGGCTTTGTCAGCTGC +
Preference number: 3 (lower is better)
Translates to: LTTPGGYLLREEGRRVSSLVCYP*MGFVSC
Trigger: GCAGCTGACAAAGCCCATCAAGGGATAGCAGACCAG...AGAGCTCACACGTCTGCCCTCCTCTCTCAGCAGGTACCCTCCAGGCGTCGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp TCATTGAGGCCGCAATGCAGGGTAACGCAGTCACTGTaGAAGAGCAGGTCCTGCAGCGTGCTCACGCGCTGT +
Preference number: 3 (lower is better)
Translates to: SLRPQCRVTQSL*KSRSCSVLTRC
Trigger: ACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCACAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CCA 72 bp TGCAGAAGGCAACCAGCCCTGGGATGGGAGGGCCCCTaGCCTTTCCCAAGGCATCTGAAAAAGTGGAACTGC +
Preference number: 3 (lower is better)
Translates to: CRRQPALGWEGP*PFPRHLKKWNC
Trigger: GCAGTTCCACTTTTTCAGATGCCTTGGGAAAGGCCAGGGGCCCTCCCATCCCAGGGCTGGTTGCCTTCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 72 bp AGAAGGAAGTCAGCCCAGACTGGACTAGAGGCTGCATaGGAAGCCAAGCTAGTGTATGCCTTGGCCCCGCTG +
Preference number: 3 (lower is better)
Translates to: RRKSAQTGLEAA*EAKLVYALAPL
Trigger: CAGCGGGGCCAAGGCATACACTAGCTTGGCTTCGCATGCAGCCTCTAGTCCAGTCTGGGCTGACTTCCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp TTGAAGCCAAAAGCCTTTGCCCGAAGTGCCACCGCCTaGCCCACACGACCTAGTCCAATGATGCCCAAGGTC +
Preference number: 3 (lower is better)
Translates to: LKPKAFARSATA*PTRPSPMMPKV
Trigger: GACCTTGGGCATCATTGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCGGGCAAAGGCTTTTGGCTTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CCA 72 bp AGAGGCAGACCCAGAGCCACCTTCTTGCCACAGCCCTaGCTTACTCCCCAGGAACATCATAGGACCATCCAC +
Preference number: 3 (lower is better)
Translates to: RGRPRATFLPQP*LTPQEHHRTIH
Trigger: GTGGATGGTCCTATGATGTTCCTGGGGAGTAAGCCAGGGCTGTGGCAAGAAGGTGGCTCTGGGTCTGCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CAA 90 bp GTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTCAGGTTTTCTTTTaGTTGACAGCTAAGCAAACA +
Preference number: 3 (lower is better)
Translates to: VVLSTLGTADASEPLVMPPQVFF*LTAKQT
Trigger: TGTTTGCTTAGCTGTCAACAAAAAGAAAACCTGAGG...CGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR-3UTR CAA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATCCTCAGGTTTTCTTTTaGTTGACAGCTAAGCAAACA +
Preference number: 3 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDPQVFF*LTAKQT
Trigger: TGTTTGCTTAGCTGTCAACAAAAAGAAAACCTGAGG...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR TCA 72 bp TGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTTaGCACAGTTTTTCAAGCTATCTGGGATCCGGCCTA +
Preference number: 3 (lower is better)
Translates to: WPSAWRLSGGPC*HSFSSYLGSGL
Trigger: TAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 72 bp CAACTGGTCTGCTATCCCTTGATGGGCTTTGTCAGCTaGTGGAGCCCCAAGAAGGAAGTCAGCCCAGACTGG +
Preference number: 3 (lower is better)
Translates to: QLVCYPLMGFVS*WSPKKEVSPDW
Trigger: CCAGTCTGGGCTGACTTCCTTCTTGGGGCTCCAGCAGCTGACAAAGCCCATCAAGGGATAGCAGACCAGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp GGACAGCTCCTCACAGGCTACAACTGGTCACTCGTATaGTCTCTATCCGCCTCAGGCTTGACAGTCTGGCCA +
Preference number: 3 (lower is better)
Translates to: GQLLTGYNWSLV*SLSASGLTVWP
Trigger: TGGCCAGACTGTCAAGCCTGAGGCGGATAGAGACCATACGAGTGACCAGTTGTAGCCTGTGAGGAGCTGTCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 72 bp TGGGATGGGAGGGCCCCTGGCCTTTCCCAAGGCATCTaGAAAAGTGGAACTGCAGAACTAGCAAACCTACCC +
Preference number: 3 (lower is better)
Translates to: WDGRAPGLSQGI*KSGTAELANLP
Trigger: GGGTAGGTTTGCTAGTTCTGCAGTTCCACTTTTTCAGATGCCTTGGGAAAGGCCAGGGGCCCTCCCATCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp GAGAGACAGCAATGTGGATTAAAACTGCTGCCTCTGTaGGGGCCAAGAGGCAGACCCAGAGCCACCTTCTTG +
Preference number: 3 (lower is better)
Translates to: ERQQCGLKLLPL*GPRGRPRATFL
Trigger: CAAGAAGGTGGCTCTGGGTCTGCCTCTTGGCCCCCACAGAGGCAGCAGTTTTAATCCACATTGCTGTCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CAA 90 bp CCTGACTCCTTACTACTCTCTGGCCCAACAACAGTTCTGCCCAGCAGTCCTGTCATCCGGCCTAGGATGTaGGAAGGTACACCAGAGAGA +
Preference number: 3 (lower is better)
Translates to: PDSLLLSGPTTVLPSSPVIRPRM*EGTPER
Trigger: TCTCTCTGGTGTACCTTCCAACATCCTAGGCCGGAT...GACAGGACTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 72 bp TGGCTAAAGCTGAGGATAGCACATACCCAGTCAGAGTaGTCTGAGCACCCAAGTCTGGGAGGTGCAGAAGGC +
Preference number: 3 (lower is better)
Translates to: WLKLRIAHTQSE*SEHPSLGGAEG
Trigger: GCCTTCTGCACCTCCCAGACTTGGGTGCTCAGATCACTCTGACTGGGTATGTGCTATCCTCAGCTTTAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR-3UTR CAA 90 bp GGTCCAGAAAAGTTGGAGGCAGTAAGCACTTGGTCAGTGCTGGGCAGCATCACAGGTGTGCAGATGAGGTaGGGTGCATCCTTTAAGGGT +
Preference number: 3 (lower is better)
Translates to: GPEKLEAVSTWSVLGSITGVQMR*GASFKG
Trigger: ACCCTTAAAGGATGCACCCAACCTCATCTGCACACC...TGTGATGCTGCCCAGCACTGACCAAGTGCTTACTGCCTCCAACTTTTCTGGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 72 bp AAAGCTGAGGATAGCACATACCCAGTCAGAGTGATCTaGGCACCCAAGTCTGGGAGGTGCAGAAGGCAACCA +
Preference number: 3 (lower is better)
Translates to: KAEDSTYPVRVI*APKSGRCRRQP
Trigger: TGGTTGCCTTCTGCACCTCCCAGACTTGGGTGCTCAGATCACTCTGACTGGGTATGTGCTATCCTCAGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp GGATGTTGGAAGGTACACCAGAGAGAGACAGCAATGTaGATTAAAACTGCTGCCTCTGTGGGGGCCAAGAGG +
Preference number: 3 (lower is better)
Translates to: GCWKVHQRETAM*IKTAASVGAKR
Trigger: CCTCTTGGCCCCCACAGAGGCAGCAGTTTTAATCCACATTGCTGTCTCTCTCTGGTGTACCTTCCAACATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 72 bp TTAGCCCCATACATGTGCTCTCAGCTCACAAGCAGCTaGTGGCATCCAGCACAGCAGGTCTTCATGTACGAA +
Preference number: 3 (lower is better)
Translates to: LAPYMCSQLTSS*WHPAQQVFMYE
Trigger: TTCGTACATGAAGACCTGCTGTGCTGGATGCCATCAGCTGCTTGTGAGCTGAGAGCACATGTATGGGGCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 72 bp CACTGTGTTCTTCAGTGGCTAATCACTCAACTGGTCTaGTATCCCTTGATGGGCTTTGTCAGCTGCTGGAGC +
Preference number: 3 (lower is better)
Translates to: HCVLQWLITQLV*YPLMGFVSCWS
Trigger: GCTCCAGCAGCTGACAAAGCCCATCAAGGGATAGCAGACCAGTTGAGTGATTAGCCACTGAAGAACACAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 72 bp TTCCATCAGATAGGTATGGATCATAGAAGAGGACGTTaGAGCCAAAAGCCTTTGCCCGAAGTGCCACCGCCT +
Preference number: 3 (lower is better)
Translates to: FHQIGMDHRRGR*SQKPLPEVPPP
Trigger: AGGCGGTGGCACTTCGGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATGATCCATACCTATCTGATGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR TCA 72 bp ATGGCATCCAGCACAGCAGGTCTTCATGTACGAAAATaGTGTGTTACTCAACTTCACCCCAAGGGACTCCCC +
Preference number: 3 (lower is better)
Translates to: MASSTAGLHVRK*CVTQLHPKGLP
Trigger: GGGGAGTCCCTTGGGGTGAAGTTGAGTAACACATCATTTTCGTACATGAAGACCTGCTGTGCTGGATGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR TCA 72 bp GCACACAGCCCTTTCTGTATGGTTATCAATGACCCCTaGGGTCCAGAAAAGTTGGAGGCAGTAAGCACTTGG +
Preference number: 3 (lower is better)
Translates to: AHSPFCMVINDP*GPEKLEAVSTW
Trigger: CCAAGTGCTTACTGCCTCCAACTTTTCTGGACCTCAGGGGTCATTGATAACCATACAGAAAGGGCTGTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CCA 72 bp AGTTTTTCAAGCTATCTGGGATCCGGCCTAGGATGTTaGAAGGTACACCAGAGAGAGACAGCAATGTGGATT +
Preference number: 3 (lower is better)
Translates to: SFSSYLGSGLGC*KVHQRETAMWI
Trigger: AATCCACATTGCTGTCTCTCTCTGGTGTACCTTCCAACATCCTAGGCCGGATCCCAGATAGCTTGAAAAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR GCA 72 bp AGAACATTCGTGATAGAATTAGCTACTAACTTCTTTTaGTTAAACGAGGAACGCAAAGGACACAGGACAGTG +
Preference number: 3 (lower is better)
Translates to: RTFVIELATNFF*LNEERKGHRTV
Trigger: CACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGGAGCGTGGGGTGGGTaGGCCACAGGGGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDGAWGG*ATGGRP
Trigger: TGGCCTGCCCCCTGTGGCCCACCCACCCCACGCTCC...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp ACCCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGCAGCAGGGTCCATGCTaGCCCAGTGCGTGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: TPVVLSTLGTADASEPLVQQGPC*PSAWRL
Trigger: CAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTG...CACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGGGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp GGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCGGCAGGCCCTTGTTaGGCAAGTGGGAGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: GGPEHPGHCRRLGATRDAAAGPC*ASGSCP
Trigger: TGGGCAGCTCCCACTTGCTCAACAAGGGCCTGCCGC...GGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079746.10
CDS-3UTR TCA 90 bp GGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCATGGGCCCGTTCATaGTGGGAGGTCGGACGCCCA +
Preference number: 4 (lower is better)
Translates to: GGPEHPGHCRRLGATRDAAWARS*WEVGRP
Trigger: TGGGCGTCCGACCTCCCATCATGAACGGGCCCATGC...GGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079746.10
CDS-3UTR GCA 90 bp AGCTCAGGGTGCACCACAGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCGCAGGTCCTGCAGCGTaGTCACGCGCTGTAGCCCCA +
Preference number: 4 (lower is better)
Translates to: SSGCTTAGSMLAQCVAAVAGPAA*SRAVAP
Trigger: TGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGC...GACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGGTGCACCCTGAGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp GGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCCAGCTGGGATGCCAGTaGGGGCCACACTCACGACGC +
Preference number: 4 (lower is better)
Translates to: GGPEHPGHCRRLGATRDAQLGCQ*GPHSRR
Trigger: GCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTG...GGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATCCCTTCCACAGCAGCTaGGATGCCAGTGGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDPFHSS*DASGGH
Trigger: GTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGG...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGAGCGTGGGGTGGGTaGGCCACAGGGGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: GPVSGVLGPTLDATSAHLGAWGG*ATGGRP
Trigger: TGGCCTGCCCCCTGTGGCCCACCCACCCCACGCTCC...CAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp ACGCCCGGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCAGCAGGTCCTGCAGCGTaGTCACGCGCTGTAGCCCCA +
Preference number: 4 (lower is better)
Translates to: TPGPVSGVLGPTLDATSAAGPAA*SRAVAP
Trigger: TGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGC...TGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp ACGCCCGGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCATCCATGCTGGCCCAGTaGGTGGCGGCTGTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: TPGPVSGVLGPTLDATSASMLAQ*VAAVRW
Trigger: CCACCTGACAGCCGCCACGCACTGGGCCAGCATGGA...TGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp ACGCCCGGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCATGCTGGCCCAGTGCGTaGCGGCTGTCAGGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: TPGPVSGVLGPTLDATSACWPSA*RLSGGP
Trigger: AGGACCACCTGACAGCCGCCACGCACTGGGCCAGCA...TGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATTGGAAGAGCAGGTCCTaGAGCGTGCTCACGCGCTGT +
Preference number: 4 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDWKSRS*SVLTRC
Trigger: ACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCA...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp GCACCACAGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTAAGGGCTCTGACTCATaGACGTCCAGCGCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: APQQGPCWPSAWRLSGGPKGSDS*TSSAAP
Trigger: TGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCCTT...AGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGGTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTAGGAGCGTGGGGTGGGTaGGCCACAGGGGGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLGAWGG*ATGGRP
Trigger: TGGCCTGCCCCCTGTGGCCCACCCACCCCACGCTCC...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGTCAGGCTTGACAGTCTaGCCAGGAGAGGGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: VVLSTLGTADASEPLVMPSGLTV*PGEGAW
Trigger: CCACGCTCCCTCTCCTGGCCAGACTGTCAAGCCTGA...CGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp ACGCCCGGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCAGATCCTGGCAGCTCCTaGAGCCACCTCTCGGATCTG +
Preference number: 4 (lower is better)
Translates to: TPGPVSGVLGPTLDATSADPGSS*SHLSDL
Trigger: CAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATC...TGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp CTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCGCATGGGCCCGTTCATaGTGGGAGGTCGGACGCCTG +
Preference number: 4 (lower is better)
Translates to: LGPTLDATSAHLGPRACSAWARS*WEVGRL
Trigger: CAGGCGTCCGACCTCCCATCATGAACGGGCCCATGC...GCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp ACGCCCGGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTCTGGACTCGAGTaGCTTCCCGAAGGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: TPGPVSGVLGPTLDATSAHSGLE*LPEGPG
Trigger: ACCAGGCCCTTCGGGAAGGCACTCGAGTCCAGAGTG...TGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCGCAGGTCCTGCAGCGTaGTCACGCGCTGTAGCCCCA +
Preference number: 4 (lower is better)
Translates to: PTLDATSAHLGPRACSTLAGPAA*SRAVAP
Trigger: TGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGC...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCCAGGGCCTGGGCCAGTaGCTTCTCATCCACCAGGCC +
Preference number: 4 (lower is better)
Translates to: LGPTLDATSAHLGPRACSQGLGQ*LLIHQA
Trigger: GGCCTGGTGGATGAGAAGGCACTGGCCCAGGCCCTG...GCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CTCACGACGCCTGGAGGGTACCTGCTGAGAGAGGAGGGCAGACGTGTGAGCTCTCAGGGCCTGGGCCAGTaGCTTCTCATCCACCAGGCC +
Preference number: 4 (lower is better)
Translates to: LTTPGGYLLREEGRRVSSQGLGQ*LLIHQA
Trigger: GGCCTGGTGGATGAGAAGGCACTGGCCCAGGCCCTG...AGAGCTCACACGTCTGCCCTCCTCTCTCAGCAGGTACCCTCCAGGCGTCGTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp GGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCCCATTGAGCTCAGGGTaGACCACAGCAGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: GGPEHPGHCRRLGATRDAPLSSG*TTAGSM
Trigger: CATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGG...GGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp GTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCATTGAGCTCAGGGTaGACCACAGCAGGGTCCATG +
Preference number: 4 (lower is better)
Translates to: VVLSTLGTADASEPLVMPPLSSG*TTAGSM
Trigger: CATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGG...CGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GTGGGGGCCAAGAGGCAGACCCAGAGCCACCTTCTTGCCACAGCCCTGGCTTACCGAAGTGCCACCGCCTaGCCCACACGACCTAGTCCA +
Preference number: 4 (lower is better)
Translates to: VGAKRQTQSHLLATALAYRSATA*PTRPSP
Trigger: TGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCG...GTAAGCCAGGGCTGTGGCAAGAAGGTGGCTCTGGGTCTGCCTCTTGGCCCCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
3UTR CAA 72 bp GTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTaGGGTCCAAGAGCGTGCAGCACCCTCCACCAGGTG +
Preference number: 4 (lower is better)
Translates to: VLGPTLDATSAH*GPRACSTLHQV
Trigger: CACCTGGTGGAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp CTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACAGGGGGCAGGCCATaGGACAGGGACATGGCACTG +
Preference number: 4 (lower is better)
Translates to: LGPTLDATSAHLGPRACSTGGRP*DRDMAL
Trigger: CAGTGCCATGTCCCTGTCTCATGGCCTGCCCCCTGT...GCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp GTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGGCCACCTCTCGGATCTaGTCTACACTCTGGACTCGA +
Preference number: 4 (lower is better)
Translates to: VVLSTLGTADASEPLVMPATSRI*STLWTR
Trigger: TCGAGTCCAGAGTGTAGAGCAGATCCGAGAGGTGGC...CGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGGATGTGGCACAGGGTaGAGTCTGCCGTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDGCGTG*SLPFLP
Trigger: TGGAAGAAACGGCAGACTCCACCCTGTGCCACATCC...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTTCTACAGGTTCAGGATGTaGCACAGGGTGGAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: PEHPGHCRRLGATRDAAFYRFRM*HRVESA
Trigger: GGCAGACTCCACCCTGTGCCACATCCTGAACCTGTA...GAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTGGTGTAGCCAGGTaGTTCGTCGGTACAGGTTCA +
Preference number: 4 (lower is better)
Translates to: VVLSTLGTADASEPLVMPPGVAR*FVGTGS
Trigger: TGAACCTGTACCGACGAACCACCTGGCTACACCAGG...CGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGCGAAGTGCCACCGCCTaGCCCACACGACCTAGTCCA +
Preference number: 4 (lower is better)
Translates to: GPVSGVLGPTLDATSAHLRSATA*PTRPSP
Trigger: TGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCG...CAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp ACCCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGCTGTACCATGCAGCATaGGGTGTGCAGATGAGGTTG +
Preference number: 4 (lower is better)
Translates to: TPVVLSTLGTADASEPLVLYHAA*GVQMRL
Trigger: CAACCTCATCTGCACACCCCATGCTGCATGGTACAG...CACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp ACCCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGGTGGCGGCTGTCAGGTaGTCCTTGTTGACACAGTTT +
Preference number: 4 (lower is better)
Translates to: TPVVLSTLGTADASEPLVVAAVR*SLLTQF
Trigger: AAACTGTGTCAACAAGGACCACCTGACAGCCGCCAC...CACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCACAGCTGGGATGCCAGTaGGGGCCACACTCACGACGC +
Preference number: 4 (lower is better)
Translates to: VSGVLGPTLDATSAHLGPQLGCQ*GPHSRR
Trigger: GCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTG...TGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp GTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAACAGGGGGCAGGCCATaGGACAGGGACATGGCACTG +
Preference number: 4 (lower is better)
Translates to: VSGVLGPTLDATSAHLGPTGGRP*DRDMAL
Trigger: CAGTGCCATGTCCCTGTCTCATGGCCTGCCCCCTGT...TGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCCACTCTGGACTCGAGTaGCTTCCCGAAGGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: PTLDATSAHLGPRACSTLHSGLE*LPEGPG
Trigger: ACCAGGCCCTTCGGGAAGGCACTCGAGTCCAGAGTG...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp GGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGAAGGGCTCTGACTCATaGACGTCCAGCGCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: GPVSGVLGPTLDATSAHLKGSDS*TSSAAP
Trigger: TGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCCTT...CAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTCCACAGCAGGGTCCATaGTGGCCCAGTGCGTGGCGG +
Preference number: 4 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRPQQGP*WPSAWR
Trigger: CCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGG...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTTCCTGTACCATGCAGCATaGGGTGTGCAGATGAGGTTG +
Preference number: 4 (lower is better)
Translates to: PEHPGHCRRLGATRDAAFLYHAA*GVQMRL
Trigger: CAACCTCATCTGCACACCCCATGCTGCATGGTACAG...GAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTTCGTGGCGGCTGTCAGGTaGTCCTTGTTGACACAGTTT +
Preference number: 4 (lower is better)
Translates to: PEHPGHCRRLGATRDAAFVAAVR*SLLTQF
Trigger: AAACTGTGTCAACAAGGACCACCTGACAGCCGCCAC...GAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCACAGGGACATGGCACTaGGAACAATCCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: GGPEHPGHCRRLGATRDATGTWH*EQSLPQ
Trigger: CTGTGGAAGGGATTGTTCCCAGTGCCATGTCCCTGT...GGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGACAGGGACATGGCACTaGGAACAATCCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: VVLSTLGTADASEPLVMPTGTWH*EQSLPQ
Trigger: CTGTGGAAGGGATTGTTCCCAGTGCCATGTCCCTGT...CGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp ACCCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGCATGAGACAGGGACATaGCACTGGGAACAATCCCTT +
Preference number: 4 (lower is better)
Translates to: TPVVLSTLGTADASEPLVHETGT*HWEQSL
Trigger: AAGGGATTGTTCCCAGTGCCATGTCCCTGTCTCATG...CACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp GCCATGAGACAGGGACATGGCACTGGGAACAATCCCTTCCACAGCAGCTGGGATGCATGGGCCCGTTCATaGTGGGAGGTCGGACGCCTG +
Preference number: 4 (lower is better)
Translates to: AMRQGHGTGNNPFHSSWDAWARS*WEVGRL
Trigger: CAGGCGTCCGACCTCCCATCATGAACGGGCCCATGC...ATCCCAGCTGCTGTGGAAGGGATTGTTCCCAGTGCCATGTCCCTGTCTCATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp GACGCCTGGAGGGTACCTGCTGAGAGAGGAGGGCAGACGTGTGAGCTCTACAGATGGAAGAGCAGGTCCTaGAGCGTGCTCACGCGCTGT +
Preference number: 4 (lower is better)
Translates to: DAWRVPAERGGQTCELYRWKSRS*SVLTRC
Trigger: ACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCA...TCTGTAGAGCTCACACGTCTGCCCTCCTCTCTCAGCAGGTACCCTCCAGGCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CCAGCCCACAGGACGGGACAACTACAATCAACTTGGGGACGTGCTTCCTCTTGCTCCATGCTGGCCCAGTaGGTGGCGGCTGTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: PAHRTGQLQSTWGRASSCSMLAQ*VAAVRW
Trigger: CCACCTGACAGCCGCCACGCACTGGGCCAGCATGGA...GCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTGTCCCGTCCTGTGGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATCCACAGCAGGGTCCATaGTGGCCCAGTGCGTGGCGG +
Preference number: 4 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNPQQGP*WPSAWR
Trigger: CCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGG...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACGAAGTGCCACCGCCTaGCCCACACGACCTAGTCCA +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLRSATA*PTRPSP
Trigger: TGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCG...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CCAGCCCACAGGACGGGACAACTACAATCAACTTGGGGACGTGCTTCCTCTTGCCAGCTGGGATGCCAGTaGGGGCCACACTCACGACGC +
Preference number: 4 (lower is better)
Translates to: PAHRTGQLQSTWGRASSCQLGCQ*GPHSRR
Trigger: GCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTG...GCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTGTCCCGTCCTGTGGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACCCTTCCACAGCAGCTaGGATGCCAGTGGGGGCCAC +
Preference number: 4 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGPFHSS*DASGGH
Trigger: GTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGG...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATCATGAGACAGGGACATaGCACTGGGAACAATCCCTT +
Preference number: 4 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDHETGT*HWEQSL
Trigger: AAGGGATTGTTCCCAGTGCCATGTCCCTGTCTCATG...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCATCAGGCTTGACAGTCTaGCCAGGAGAGGGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: VSGVLGPTLDATSAHLGPSGLTV*PGEGAW
Trigger: CCACGCTCCCTCTCCTGGCCAGACTGTCAAGCCTGA...TGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR CAA 72 bp CTGTGGGGGCCAAGAGGCAGACCCAGAGCCACCTTCTaGCCACAGCCCTGGCTTACTCCCCAGGAACATCAT +
Preference number: 4 (lower is better)
Translates to: LWGPRGRPRATF*PQPWLTPQEHH
Trigger: ATGATGTTCCTGGGGAGTAAGCCAGGGCTGTGGCAAGAAGGTGGCTCTGGGTCTGCCTCTTGGCCCCCACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp ACGCCCGGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACATAGAAGAGGACGTTaGAGCCAAAAGCCTTTGCCC +
Preference number: 4 (lower is better)
Translates to: TPGPVSGVLGPTLDATSAHRRGR*SQKPLP
Trigger: GGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATG...TGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCCGGGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTATGTAGGCAGCCCCATTaGGCTCAGGGTGCACCACAG +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLCRQPH*AQGAPQ
Trigger: CTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACA...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGACAGGGGGCAGGCCATaGGACAGGGACATGGCACTG +
Preference number: 4 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTTGGRP*DRDMAL
Trigger: CAGTGCCATGTCCCTGTCTCATGGCCTGCCCCCTGT...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTATATCCGCCTCAGGCTTaGCAGTCTGGCCAGGAGAGG +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLYPPQA*QSGQER
Trigger: CCTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATA...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp GCCATGAGACAGGGACATGGCACTGGGAACAATCCCTTCCACAGCAGCTGGGATGGGCACAGGGGCACCTaGAGGGCTCTGACTCATGCA +
Preference number: 4 (lower is better)
Translates to: AMRQGHGTGNNPFHSSWDGHRGT*RALTHA
Trigger: TGCATGAGTCAGAGCCCTTCAGGTGCCCCTGTGCCC...ATCCCAGCTGCTGTGGAAGGGATTGTTCCCAGTGCCATGTCCCTGTCTCATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTATGGAAGAGCAGGTCCTaGAGCGTGCTCACGCGCTGT +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLWKSRS*SVLTRC
Trigger: ACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCA...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCCCGGATTTCCCGGGCTaGCTCCTCTCTCATCTCAAT +
Preference number: 4 (lower is better)
Translates to: PTLDATSAHLGPRACSTLPDFPG*LLSHLN
Trigger: ATTGAGATGAGAGAGGAGGCAGCCCGGGAAATCCGG...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp GGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGCCGGATTTCCCGGGCTaGCTCCTCTCTCATCTCAAT +
Preference number: 4 (lower is better)
Translates to: GPVSGVLGPTLDATSAHLPDFPG*LLSHLN
Trigger: ATTGAGATGAGAGAGGAGGCAGCCCGGGAAATCCGG...CAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GGGCCAGTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGTACAGGTTCAGGATGTaGCACAGGGTGGAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: GPVSGVLGPTLDATSAHLYRFRM*HRVESA
Trigger: GGCAGACTCCACCCTGTGCCACATCCTGAACCTGTA...CAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGACTGGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACGAAGTGCCACCGCCTaGCCCACACGACCTAGTCCA +
Preference number: 4 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGRSATA*PTRPSP
Trigger: TGGACTAGGTCGTGTGGGCCAGGCGGTGGCACTTCG...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATTGCTGGCCCAGTGCGTaGCGGCTGTCAGGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNCWPSA*RLSGGP
Trigger: AGGACCACCTGACAGCCGCCACGCACTGGGCCAGCA...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTATCAGGCTTGACAGTCTaGCCAGGAGAGGGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLSGLTV*PGEGAW
Trigger: CCACGCTCCCTCTCCTGGCCAGACTGTCAAGCCTGA...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTTGTAGGCAGCCCCATTaGGCTCAGGGTGCACCACAG +
Preference number: 4 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRCRQPH*AQGAPQ
Trigger: CTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACA...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTTATCCGCCTCAGGCTTaGCAGTCTGGCCAGGAGAGG +
Preference number: 4 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRYPPQA*QSGQER
Trigger: CCTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATA...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp TGGATCATAGAAGAGGACGTTGAAGCCAAAAGCCTTTGCCCGAAGTGCCACCGCGCATGGGCCCGTTCATaGTGGGAGGTCGGACGCCTG +
Preference number: 4 (lower is better)
Translates to: WIIEEDVEAKSLCPKCHRAWARS*WEVGRL
Trigger: CAGGCGTCCGACCTCCCATCATGAACGGGCCCATGC...GCGGTGGCACTTCGGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATGATCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
CDS-3UTR TCA 90 bp AGGGGGCAGGCCATGAGACAGGGACATGGCACTGGGAACAATCCCTTCCACAGCGATCTTGTCCCCTCCTaGGAGCAGACAGCAAACCCT +
Preference number: 4 (lower is better)
Translates to: RGQAMRQGHGTGNNPFHSDLVPS*EQTANP
Trigger: AGGGTTTGCTGTCTGCTCTCAGGAGGGGACAAGATC...GCTGTGGAAGGGATTGTTCCCAGTGCCATGTCCCTGTCTCATGGCCTGCCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp AAAATATTGCTAGCCTACCACATGAGCAGGACGGCACCACGCAGGCAAGGGTCTGCAGGTCCTGCAGCGTaGTCACGCGCTGTAGCCCCA +
Preference number: 4 (lower is better)
Translates to: KILLAYHMSRTAPRRQGSAGPAA*SRAVAP
Trigger: TGGGGCTACAGCGCGTGAGCACGCTGCAGGACCTGC...AGACCCTTGCCTGCGTGGTGCCGTCCTGCTCATGTGGTAGGCTAGCAATATTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTGGAAGAGCAGGTCCTaGAGCGTGCTCACGCGCTGT +
Preference number: 4 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTWKSRS*SVLTRC
Trigger: ACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCA...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp AAAATATTGCTAGCCTACCACATGAGCAGGACGGCACCACGCAGGCAAGGGTCTCAGGGCCTGGGCCAGTaGCTTCTCATCCACCAGGCC +
Preference number: 4 (lower is better)
Translates to: KILLAYHMSRTAPRRQGSQGLGQ*LLIHQA
Trigger: GGCCTGGTGGATGAGAAGGCACTGGCCCAGGCCCTG...AGACCCTTGCCTGCGTGGTGCCGTCCTGCTCATGTGGTAGGCTAGCAATATTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp CCAGCCCACAGGACGGGACAACTACAATCAACTTGGGGACGTGCTTCCTCTTGCAAGGGCTCTGACTCATaGACGTCCAGCGCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: PAHRTGQLQSTWGRASSCKGSDS*TSSAAP
Trigger: TGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCCTT...GCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTGTCCCGTCCTGTGGGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp AAAATATTGCTAGCCTACCACATGAGCAGGACGGCACCACGCAGGCAAGGGTCTTCCATGCTGGCCCAGTaGGTGGCGGCTGTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: KILLAYHMSRTAPRRQGSSMLAQ*VAAVRW
Trigger: CCACCTGACAGCCGCCACGCACTGGGCCAGCATGGA...AGACCCTTGCCTGCGTGGTGCCGTCCTGCTCATGTGGTAGGCTAGCAATATTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCAACTGGTCACTCGTATaGTCTCTATCCGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: PTLDATSAHLGPRACSTLNWSLV*SLSASG
Trigger: GCCTGAGGCGGATAGAGACCATACGAGTGACCAGTT...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCCTTCTCTGGTCAGTGTaGTGGTATGGTACATCAGGG +
Preference number: 4 (lower is better)
Translates to: PTLDATSAHLGPRACSTLLLWSV*WYGTSG
Trigger: CCCTGATGTACCATACCATCACACTGACCAGAGAAG...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATGATCCTGGCAGCTCCTaGAGCCACCTCTCGGATCTG +
Preference number: 4 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNDPGSS*SHLSDL
Trigger: CAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATC...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATTATCCGCCTCAGGCTTaGCAGTCTGGCCAGGAGAGG +
Preference number: 4 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNYPPQA*QSGQER
Trigger: CCTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATA...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATCACTCTGGACTCGAGTaGCTTCCCGAAGGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNHSGLE*LPEGPG
Trigger: ACCAGGCCCTTCGGGAAGGCACTCGAGTCCAGAGTG...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CCTGACTCCTTACTACTCTCTGGCCCAACAACAGTTCTGCCCAGCAGTCCTGTCCACTCTGGACTCGAGTaGCTTCCCGAAGGGCCTGGT +
Preference number: 4 (lower is better)
Translates to: PDSLLLSGPTTVLPSSPVHSGLE*LPEGPG
Trigger: ACCAGGCCCTTCGGGAAGGCACTCGAGTCCAGAGTG...GACAGGACTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATAAGGGCTCTGACTCATaGACGTCCAGCGCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNKGSDS*TSSAAP
Trigger: TGGCGCAGCGCTGGACGTGCATGAGTCAGAGCCCTT...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCGTCAGTGTGATGGTATaGTACATCAGGGCACCCACA +
Preference number: 4 (lower is better)
Translates to: PTLDATSAHLGPRACSTLVSVMV*YIRAPT
Trigger: TGTGGGTGCCCTGATGTACCATACCATCACACTGAC...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCGTTTTTCAAGCTATCTaGGATCCGGCCTGTGATGGC +
Preference number: 4 (lower is better)
Translates to: PTLDATSAHLGPRACSTLVFQAI*DPACDG
Trigger: GCCATCACAGGCCGGATCCCAGATAGCTTGAAAAAC...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR CAA 72 bp CTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTaGACACAGTTTTTCAAGCTATCTGGGATCCGGCCT +
Preference number: 4 (lower is better)
Translates to: LAQCVAAVRWSL*TQFFKLSGIRP
Trigger: AGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp AAAATATTGCTAGCCTACCACATGAGCAGGACGGCACCACGCAGGCAAGGGTCTGATCCTGGCAGCTCCTaGAGCCACCTCTCGGATCTG +
Preference number: 4 (lower is better)
Translates to: KILLAYHMSRTAPRRQGSDPGSS*SHLSDL
Trigger: CAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATC...AGACCCTTGCCTGCGTGGTGCCGTCCTGCTCATGTGGTAGGCTAGCAATATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTATCATTGAGGCCGCAATaGAGGGTAACGCAGTCACTG +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLSLRPQ*RVTQSL
Trigger: CAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGA...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGCCGGATTTCCCGGGCTaGCTCCTCTCTCATCTCAAT +
Preference number: 4 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTPDFPG*LLSHLN
Trigger: ATTGAGATGAGAGAGGAGGCAGCCCGGGAAATCCGG...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTACAGGTTCAGGATGTaGCACAGGGTGGAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTYRFRM*HRVESA
Trigger: GGCAGACTCCACCCTGTGCCACATCCTGAACCTGTA...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp GTAACGCAGTCACTGTGGAAGAGCAGGTCCTGCAGCGTGCTCACGCGCTGTAGCTGCGATGCCTTCTCATaGATCTCCTGTGTGGACTGT +
Preference number: 4 (lower is better)
Translates to: VTQSLWKSRSCSVLTRCSCDAFS*ISCVDC
Trigger: ACAGTCCACACAGGAGATCCATGAGAAGGCATCGCA...GCTACAGCGCGTGAGCACGCTGCAGGACCTGCTCTTCCACAGTGACTGCGTTAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
3UTR CAA 72 bp ATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTaGTTGACACAGTTTTTCAAGCTATCTGGGATCCGG +
Preference number: 4 (lower is better)
Translates to: MLAQCVAAVRWS*LTQFFKLSGIR
Trigger: CCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACTTCTCTGGTCAGTGTaGTGGTATGGTACATCAGGG +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLLLWSV*WYGTSG
Trigger: CCCTGATGTACCATACCATCACACTGACCAGAGAAG...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACATAGAAGAGGACGTTaGAGCCAAAAGCCTTTGCCC +
Preference number: 4 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLHRRGR*SQKPLP
Trigger: GGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATG...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTTCATTGAGGCCGCAATaGAGGGTAACGCAGTCACTG +
Preference number: 4 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRSLRPQ*RVTQSL
Trigger: CAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGA...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CCAGCCCACAGGACGGGACAACTACAATCAACTTGGGGACGTGCTTCCTCTTGCCTGCTCACTGTACCATaGAGCATGGGGTGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: PAHRTGQLQSTWGRASSCLLTVP*SMGCAD
Trigger: ATCTGCACACCCCATGCTGCATGGTACAGTGAGCAG...GCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTGTCCCGTCCTGTGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR GCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACTGCTCACTGTACCATaGAGCATGGGGTGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGLLTVP*SMGCAD
Trigger: ATCTGCACACCCCATGCTGCATGGTACAGTGAGCAG...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GTGGTGGTTGTGCTCATTGAGGCCGCAATGCAGGGTAACGCAGTCACTGTGGAAGGATGTGGCACAGGGTaGAGTCTGCCGTTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: VVVVLIEAAMQGNAVTVEGCGTG*SLPFLP
Trigger: TGGAAGAAACGGCAGACTCCACCCTGTGCCACATCC...TTCCACAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGAGCACAACCACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201275.4
CDS-3UTR CCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGAATCTGCTCTACACTCTaGACTCGAGTGCCTTCCCGA +
Preference number: 4 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGICSTL*TRVPSR
Trigger: TCGGGAAGGCACTCGAGTCCAGAGTGTAGAGCAGAT...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CCAGCCCACAGGACGGGACAACTACAATCAACTTGGGGACGTGCTTCCTCTTGCATCTGCTCTACACTCTaGACTCGAGTGCCTTCCCGA +
Preference number: 4 (lower is better)
Translates to: PAHRTGQLQSTWGRASSCICSTL*TRVPSR
Trigger: TCGGGAAGGCACTCGAGTCCAGAGTGTAGAGCAGAT...GCAAGAGGAAGCACGTCCCCAAGTTGATTGTAGTTGTCCCGTCCTGTGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACTGTACCATGCAGCATaGGGTGTGCAGATGAGGTTG +
Preference number: 4 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGLYHAA*GVQMRL
Trigger: CAACCTCATCTGCACACCCCATGCTGCATGGTACAG...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGAAACTGGTCACTCGTATaGTCTCTATCCGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGNWSLV*SLSASG
Trigger: GCCTGAGGCGGATAGAGACCATACGAGTGACCAGTT...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTAACTGGTCACTCGTATaGTCTCTATCCGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRNWSLV*SLSASG
Trigger: GCCTGAGGCGGATAGAGACCATACGAGTGACCAGTT...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp CCCCATACATGTGCTCTCAGCTCACAAGCAGCTGATGGCATCCAGCACAGCAGGCTTCTCTGGTCAGTGTaGTGGTATGGTACATCAGGG +
Preference number: 4 (lower is better)
Translates to: PHTCALSSQAADGIQHSRLLWSV*WYGTSG
Trigger: CCCTGATGTACCATACCATCACACTGACCAGAGAAG...CCTGCTGTGCTGGATGCCATCAGCTGCTTGTGAGCTGAGAGCACATGTATGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTCATAGAAGAGGACGTTaGAGCCAAAAGCCTTTGCCC +
Preference number: 4 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRHRRGR*SQKPLP
Trigger: GGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATG...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp CCTGACTCCTTACTACTCTCTGGCCCAACAACAGTTCTGCCCAGCAGTCCTGTCTCATTGAGGCCGCAATaGAGGGTAACGCAGTCACTG +
Preference number: 4 (lower is better)
Translates to: PDSLLLSGPTTVLPSSPVSLRPQ*RVTQSL
Trigger: CAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGA...GACAGGACTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACATGAGACAGGGACATaGCACTGGGAACAATCCCTT +
Preference number: 4 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGHETGT*HWEQSL
Trigger: AAGGGATTGTTCCCAGTGCCATGTCCCTGTCTCATG...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR CAA 72 bp CCTACTAGCCAAGGTCCAGGTTTAAGCCTCATTGTCTaGCAGACTGTCCCCTCCCTTGCCTGCTCACCTGTA +
Preference number: 4 (lower is better)
Translates to: PTSQGPGLSLIV*QTVPSLACSPV
Trigger: TACAGGTGAGCAGGCAAGGGAGGGGACAGTCTGCAAGACAATGAGGCTTAAACCTGGACCTTGGCTAGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp GGTCCAGAAAAGTTGGAGGCAGTAAGCACTTGGTCAGTGCTGGGCAGCATCACACCAGCAAGAGGGCAGTaGTCAAATACATGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: GPEKLEAVSTWSVLGSITPARGQ*SNTWSP
Trigger: GGGAGACCATGTATTTGAGCACTGCCCTCTTGCTGG...TGTGATGCTGCCCAGCACTGACCAAGTGCTTACTGCCTCCAACTTTTCTGGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp CCTGACTCCTTACTACTCTCTGGCCCAACAACAGTTCTGCCCAGCAGTCCTGTCGTCAGTGTGATGGTATaGTACATCAGGGCACCCACA +
Preference number: 4 (lower is better)
Translates to: PDSLLLSGPTTVLPSSPVVSVMV*YIRAPT
Trigger: TGTGGGTGCCCTGATGTACCATACCATCACACTGAC...GACAGGACTGCTGGGCAGAACTGTTGTTGGGCCAGAGAGTAGTAAGGAGTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp AAAATATTGCTAGCCTACCACATGAGCAGGACGGCACCACGCAGGCAAGGGTCTATCTGCTCTACACTCTaGACTCGAGTGCCTTCCCGA +
Preference number: 4 (lower is better)
Translates to: KILLAYHMSRTAPRRQGSICSTL*TRVPSR
Trigger: TCGGGAAGGCACTCGAGTCCAGAGTGTAGAGCAGAT...AGACCCTTGCCTGCGTGGTGCCGTCCTGCTCATGTGGTAGGCTAGCAATATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR CAA 72 bp CTTCAGTGGCTAATCACTCAACTGGTCTGCTATCCCTaGATGGGCTTTGTCAGCTGCTGGAGCCCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: LQWLITQLVCYP*MGFVSCWSPKK
Trigger: CTTCTTGGGGCTCCAGCAGCTGACAAAGCCCATCAAGGGATAGCAGACCAGTTGAGTGATTAGCCACTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp AAAATATTGCTAGCCTACCACATGAGCAGGACGGCACCACGCAGGCAAGGGTCTGTCAGTGTGATGGTATaGTACATCAGGGCACCCACA +
Preference number: 4 (lower is better)
Translates to: KILLAYHMSRTAPRRQGSVSVMV*YIRAPT
Trigger: TGTGGGTGCCCTGATGTACCATACCATCACACTGAC...AGACCCTTGCCTGCGTGGTGCCGTCCTGCTCATGTGGTAGGCTAGCAATATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079746.10
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GGCCAAACCTCTTACCCCAAGAAAAGTAGACTGTCCCATCCAGCTCAATCCTCTCCTGGTGTAGCCAGGTaGTTCGTCGGTACAGGTTCA +
Preference number: 4 (lower is better)
Translates to: GQTSYPKKSRLSHPAQSSPGVAR*FVGTGS
Trigger: TGAACCTGTACCGACGAACCACCTGGCTACACCAGG...AGAGGATTGAGCTGGATGGGACAGTCTACTTTTCTTGGGGTAAGAGGTTTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACACAGCAGGGTCCATGCTaGCCCAGTGCGTGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTQQGPC*PSAWRL
Trigger: CAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTG...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTCAGGTGGTCCTTGTTaGCACAGTTTTTCAAGCTAT +
Preference number: 4 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTSGGPC*HSFSSY
Trigger: ATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGA...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATTCAGGTGGTCCTTGTTaGCACAGTTTTTCAAGCTAT +
Preference number: 4 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNSGGPC*HSFSSY
Trigger: ATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGA...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACAGATCCTGGCAGCTCCTaGAGCCACCTCTCGGATCTG +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTDPGSS*SHLSDL
Trigger: CAGATCCGAGAGGTGGCTTCAGGAGCTGCCAGGATC...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp ACATTCGTGATAGAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAACCACAGCAGGGTCCATaGTGGCCCAGTGCGTGGCGG +
Preference number: 4 (lower is better)
Translates to: TFVIELATNFFCLNEERKPQQGP*WPSAWR
Trigger: CCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGG...TTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
3UTR CAA 72 bp CAGTTTTTCAAGCTATCTGGGATCCGGCCTAGGATGTaGGAAGGTACACCAGAGAGAGACAGCAATGTGGAT +
Preference number: 4 (lower is better)
Translates to: QFFKLSGIRPRM*EGTPERDSNVD
Trigger: ATCCACATTGCTGTCTCTCTCTGGTGTACCTTCCAACATCCTAGGCCGGATCCCAGATAGCTTGAAAAACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp ACATTCGTGATAGAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAATGCTGGCCCAGTGCGTaGCGGCTGTCAGGTGGTCCT +
Preference number: 4 (lower is better)
Translates to: TFVIELATNFFCLNEERKCWPSA*RLSGGP
Trigger: AGGACCACCTGACAGCCGCCACGCACTGGGCCAGCA...TTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp ACATTCGTGATAGAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGCACCTGAAGGGCTCTaGCTCATGCACGTCCAGCGC +
Preference number: 4 (lower is better)
Translates to: TFVIELATNFFCLNEERKAPEGL*LMHVQR
Trigger: GCGCTGGACGTGCATGAGTCAGAGCCCTTCAGGTGC...TTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACATACAGGTTCAGGATGTaGCACAGGGTGGAGTCTGCC +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTYRFRM*HRVESA
Trigger: GGCAGACTCCACCCTGTGCCACATCCTGAACCTGTA...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACATCATTGAGGCCGCAATaGAGGGTAACGCAGTCACTG +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTSLRPQ*RVTQSL
Trigger: CAGTGACTGCGTTACCCTGCATTGCGGCCTCAATGA...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR GCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACACTGCTCACTGTACCATaGAGCATGGGGTGTGCAGAT +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTLLTVP*SMGCAD
Trigger: ATCTGCACACCCCATGCTGCATGGTACAGTGAGCAG...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACAGTGGCGGCTGTCAGGTaGTCCTTGTTGACACAGTTT +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTVAAVR*SLLTQF
Trigger: AAACTGTGTCAACAAGGACCACCTGACAGCCGCCAC...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR TCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACACATAGAAGAGGACGTTaGAGCCAAAAGCCTTTGCCC +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTHRRGR*SQKPLP
Trigger: GGGCAAAGGCTTTTGGCTTCAACGTCCTCTTCTATG...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACAGTTTTTCAAGCTATCTaGGATCCGGCCTGTGATGGC +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTVFQAI*DPACDG
Trigger: GCCATCACAGGCCGGATCCCAGATAGCTTGAAAAAC...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp ACATTCGTGATAGAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAACCTGGTGTAGCCAGGTaGTTCGTCGGTACAGGTTCA +
Preference number: 4 (lower is better)
Translates to: TFVIELATNFFCLNEERKPGVAR*FVGTGS
Trigger: TGAACCTGTACCGACGAACCACCTGGCTACACCAGG...TTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CCA 90 bp ACATTCGTGATAGAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAATCTGCTCTACACTCTaGACTCGAGTGCCTTCCCGA +
Preference number: 4 (lower is better)
Translates to: TFVIELATNFFCLNEERKICSTL*TRVPSR
Trigger: TCGGGAAGGCACTCGAGTCCAGAGTGTAGAGCAGAT...TTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR TCA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACATCAGGTGGTCCTTGTTaGCACAGTTTTTCAAGCTAT +
Preference number: 4 (lower is better)
Translates to: ELATNFFCLNEERKGHRTSGGPC*HSFSSY
Trigger: ATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGA...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CCA 90 bp ACATTCGTGATAGAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGTTTTTCAAGCTATCTaGGATCCGGCCTGTGATGGC +
Preference number: 4 (lower is better)
Translates to: TFVIELATNFFCLNEERKVFQAI*DPACDG
Trigger: GCCATCACAGGCCGGATCCCAGATAGCTTGAAAAAC...TTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTCTATCACGAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATCTATCCGCCTCAGGCTaGACAGTCTGGCCAGGAGAG +
Preference number: 5 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDLSASG*TVWPGE
Trigger: CTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAG...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp CCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGCCGCCTTCTGGTGGTTGTGCTCATaGAGGCCGCAATGCAGGGTA +
Preference number: 5 (lower is better)
Translates to: PEHPGHCRRLGATRDAAFWWLCS*RPQCRV
Trigger: TACCCTGCATTGCGGCCTCAATGAGCACAACCACCA...GAAGGCGGCATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS CCA 90 bp ACATGGCACTGGGAACAATCCCTTCCACAGCAGCTGGGATGCCAGTaGGGGCCACACTCACGACGCCTGGAGGGTACCTGCTGTAGGCAG +
Preference number: 5 (lower is better)
Translates to: TWHWEQSLPQQLGCQ*GPHSRRLEGTCCRQ
Trigger: CTGCCTACAGCAGGTACCCTCCAGGCGTCGTGAGTGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGGATTGTTCCCAGTGCCATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
CDS-3UTR CAA 90 bp CGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACCCAGCGGCAGGCCCTaGTTGAGCAAGTGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: RGTQRTQDSEPAHRTGQLPSGRP*LSKWEL
Trigger: CAGCTCCCACTTGCTCAACAAGGGCCTGCCGCTGGG...TAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079746.10
CDS-3UTR CAA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATGGTGTGCAGATGAGGTaGGGTGCATCCTTTAAGGGT +
Preference number: 5 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDGVQMR*GASFKG
Trigger: ACCCTTAAAGGATGCACCCAACCTCATCTGCACACC...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp CCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCACCCTCCTATCCGCCTCAGGCTaGACAGTCTGGCCAGGAGAG +
Preference number: 5 (lower is better)
Translates to: PTLDATSAHLGPRACSTLLSASG*TVWPGE
Trigger: CTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAG...GAGGGTGCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp CCCGGTGGTCCTGAGCACCCTGGGCACTGCAGACGCCTCGGAGCCACTCGTGATCACCAGAAAGGCTCCTaGTCTCATCTGCTTGACAGT +
Preference number: 5 (lower is better)
Translates to: PGGPEHPGHCRRLGATRDHQKGS*SHLLDS
Trigger: ACTGTCAAGCAGATGAGACAAGGAGCCTTTCTGGTG...ATCACGAGTGGCTCCGAGGCGTCTGCAGTGCCCAGGGTGCTCAGGACCACCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp AGCTCAGGGTGCACCACAGCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCCACCAGAAAGGCTCCTaGTCTCATCTGCTTGACAGT +
Preference number: 5 (lower is better)
Translates to: SSGCTTAGSMLAQCVAAVHQKGS*SHLLDS
Trigger: ACTGTCAAGCAGATGAGACAAGGAGCCTTTCTGGTG...GACAGCCGCCACGCACTGGGCCAGCATGGACCCTGCTGTGGTGCACCCTGAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202962.4
CDS-3UTR CAA 90 bp GTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCACTATCCGCCTCAGGCTaGACAGTCTGGCCAGGAGAG +
Preference number: 5 (lower is better)
Translates to: VSGVLGPTLDATSAHLGPLSASG*TVWPGE
Trigger: CTCTCCTGGCCAGACTGTCAAGCCTGAGGCGGATAG...TGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp GAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACAACTACAATAGCGGCAGGCCCTTGTaGAGCAAGTGGGAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: ERKGHRTVSQPTGRDNYNSGRPL*SKWELP
Trigger: GGGCAGCTCCCACTTGCTCAACAAGGGCCTGCCGCT...ATTGTAGTTGTCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079746.10
CDS-3UTR CAA 90 bp CTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCGGTGTGCAGATGAGGTaGGGTGCATCCTTTAAGGGT +
Preference number: 5 (lower is better)
Translates to: LGPTLDATSAHLGPRACSGVQMR*GASFKG
Trigger: ACCCTTAAAGGATGCACCCAACCTCATCTGCACACC...GCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp CTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAAGAGCGTGCAGCCACCAGAAAGGCTCCTaGTCTCATCTGCTTGACAGT +
Preference number: 5 (lower is better)
Translates to: LGPTLDATSAHLGPRACSHQKGS*SHLLDS
Trigger: ACTGTCAAGCAGATGAGACAAGGAGCCTTTCTGGTG...GCTGCACGCTCTTGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CAA 90 bp TTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTTGGTGGTTGTGCTCATaGAGGCCGCAATGCAGGGTA +
Preference number: 5 (lower is better)
Translates to: FIVLRSVPTATFRGTFQRWWLCS*RPQCRV
Trigger: TACCCTGCATTGCGGCCTCAATGAGCACAACCACCA...ACGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CAA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGTGGTGGTTGTGCTCATaGAGGCCGCAATGCAGGGTA +
Preference number: 5 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTWWLCS*RPQCRV
Trigger: TACCCTGCATTGCGGCCTCAATGAGCACAACCACCA...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CAA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGGGTGTGCAGATGAGGTaGGGTGCATCCTTTAAGGGT +
Preference number: 5 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTGVQMR*GASFKG
Trigger: ACCCTTAAAGGATGCACCCAACCTCATCTGCACACC...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp GTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAGCTGTCAGGTGGTCCTaGTTGACACAGTTTTTCAAG +
Preference number: 5 (lower is better)
Translates to: VSGVLGPTLDATSAHLGPAVRWS*LTQFFK
Trigger: CTTGAAAAACTGTGTCAACAAGGACCACCTGACAGC...TGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp GTCTCTGGAGTGCTAGGGCCCACACTGGATGCCACCTCTGCACACTTGGGTCCAGACTTGATGTCGATATaGTCAAACCCGCTGCCAATT +
Preference number: 5 (lower is better)
Translates to: VSGVLGPTLDATSAHLGPDLMSI*SNPLPI
Trigger: AATTGGCAGCGGGTTTGACAATATCGACATCAAGTC...TGGACCCAAGTGTGCAGAGGTGGCATCCAGTGTGGGCCCTAGCACTCCAGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CAA 90 bp CTTAAACGAGGAACGCAAAGGACACAGGACAGTGAGCCAGCCCACAGGACGGGACACCAGAAAGGCTCCTaGTCTCATCTGCTTGACAGT +
Preference number: 5 (lower is better)
Translates to: LKRGTQRTQDSEPAHRTGHQKGS*SHLLDS
Trigger: ACTGTCAAGCAGATGAGACAAGGAGCCTTTCTGGTG...TCCCGTCCTGTGGGCTGGCTCACTGTCCTGTGTCCTTTGCGTTCCTCGTTTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS-3UTR CAA 90 bp ATTCATTGTCCTGAGAAGTGTGCCGACGGCCACATTCCGGGGCACGTTCCAACGGCTGTCAGGTGGTCCTaGTTGACACAGTTTTTCAAG +
Preference number: 5 (lower is better)
Translates to: IHCPEKCADGHIPGHVPTAVRWS*LTQFFK
Trigger: CTTGAAAAACTGTGTCAACAAGGACCACCTGACAGC...CGTTGGAACGTGCCCCGGAATGTGGCCGTCGGCACACTTCTCAGGACAATGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp AAAATATTGCTAGCCTACCACATGAGCAGGACGGCACCACGCAGGCAAGGGTCTGACTTGATGTCGATATaGTCAAACCCGCTGCCAATT +
Preference number: 5 (lower is better)
Translates to: KILLAYHMSRTAPRRQGSDLMSI*SNPLPI
Trigger: AATTGGCAGCGGGTTTGACAATATCGACATCAAGTC...AGACCCTTGCCTGCGTGGTGCCGTCCTGCTCATGTGGTAGGCTAGCAATATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACAGCTGTCAGGTGGTCCTaGTTGACACAGTTTTTCAAG +
Preference number: 5 (lower is better)
Translates to: ELATNFFCLNEERKGHRTAVRWS*LTQFFK
Trigger: CTTGAAAAACTGTGTCAACAAGGACCACCTGACAGC...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS-3UTR CAA 90 bp GAATTAGCTACTAACTTCTTTTGCTTAAACGAGGAACGCAAAGGACACAGGACAGACTTGATGTCGATATaGTCAAACCCGCTGCCAATT +
Preference number: 5 (lower is better)
Translates to: ELATNFFCLNEERKGHRTDLMSI*SNPLPI
Trigger: AATTGGCAGCGGGTTTGACAATATCGACATCAAGTC...TGTCCTGTGTCCTTTGCGTTCCTCGTTTAAGCAAAAGAAGTTAGTAGCTAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS TCA 72 bp CGACGCCTGGAGGGTACCTGCTGTAGGCAGCCCCATTaGGCTCAGGGTGCACCACAGCAGGGTCCATGCTGG +
Preference number: 6 (lower is better)
Translates to: RRLEGTCCRQPH*AQGAPQQGPCW
Trigger: CCAGCATGGACCCTGCTGTGGTGCACCCTGAGCTCAATGGGGCTGCCTACAGCAGGTACCCTCCAGGCGTCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
CDS CAA 90 bp GCAGGGTCCATGCTGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTaGTTGACACAGTTTTTCAAGCTATCTGGGATCCGGCCTGTGATG +
Preference number: 6 (lower is better)
Translates to: AGSMLAQCVAAVRWS*LTQFFKLSGIRPVM
Trigger: CATCACAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCAGCATGGACCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS TCA 72 bp TGGCCCAGTGCGTGGCGGCTGTCAGGTGGTCCTTGTTaGCACAGTTTTTCAAGCTATCTGGGATCCGGCCTG +
Preference number: 6 (lower is better)
Translates to: WPSAWRLSGGPC*HSFSSYLGSGL
Trigger: CAGGCCGGATCCCAGATAGCTTGAAAAACTGTGTCAACAAGGACCACCTGACAGCCGCCACGCACTGGGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000079746.10
ENSMUST00000201575.4
ENSMUST00000202868.4
CDS CAA 90 bp CACAGGGTGGAGTCTGCCGTTTCTTCCACAGATGCTGCCGGCACATaGCACACTGCGATGCCTAGATCCCCAGCTGACTTGATGTCGATA +
Preference number: 6 (lower is better)
Translates to: HRVESAVSSTDAAGT*HTAMPRSPADLMSI
Trigger: TATCGACATCAAGTCAGCTGGGGATCTAGGCATCGCAGTGTGCAATGTGCCGGCAGCATCTGTGGAAGAAACGGCAGACTCCACCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000079746.10
ENSMUST00000201372.3
ENSMUST00000201575.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS CAA 90 bp GCTGCCGGCACATTGCACACTGCGATGCCTAGATCCCCAGCTGACTaGATGTCGATATTGTCAAACCCGCTGCCAATTCGGACGATGATT +
Preference number: 6 (lower is better)
Translates to: AAGTLHTAMPRSPAD*MSILSNPLPIRTMI
Trigger: AATCATCGTCCGAATTGGCAGCGGGTTTGACAATATCGACATCAAGTCAGCTGGGGATCTAGGCATCGCAGTGTGCAATGTGCCGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000079746.10
ENSMUST00000201372.3
ENSMUST00000201575.4
ENSMUST00000202820.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS CAA 72 bp GCGATGCCTAGATCCCCAGCTGACTTGATGTCGATATaGTCAAACCCGCTGCCAATTCGGACGATGATTCTA +
Preference number: 6 (lower is better)
Translates to: AMPRSPADLMSI*SNPLPIRTMIL
Trigger: TAGAATCATCGTCCGAATTGGCAGCGGGTTTGACAATATCGACATCAAGTCAGCTGGGGATCTAGGCATCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000079746.10
ENSMUST00000201372.3
ENSMUST00000201575.4
ENSMUST00000202820.4
ENSMUST00000202868.4
ENSMUST00000202962.4
CDS CAA 90 bp TTGCACACTGCGATGCCTAGATCCCCAGCTGACTTGATGTCGATATaGTCAAACCCGCTGCCAATTCGGACGATGATTCTAAGAGCTTTA +
Preference number: 6 (lower is better)
Translates to: LHTAMPRSPADLMSI*SNPLPIRTMILRAL
Trigger: TAAAGCTCTTAGAATCATCGTCCGAATTGGCAGCGGGTTTGACAATATCGACATCAAGTCAGCTGGGGATCTAGGCATCGCAGTGTGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000079746.10
ENSMUST00000201372.3
ENSMUST00000201575.4
ENSMUST00000202820.4
ENSMUST00000202868.4
ENSMUST00000202962.4