Pregenerated sensors for CTAG2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031181Ensembl transcript IDs: ENSMUST00000033524.3
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAGTAACACTGACTGATAACAACAGTGTGATAGAATCAAAACAGTaGATATGGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCT | + |
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Preference number: 1 (lower is better) Translates to: PVTLTDNNSVIESKQ*IWRQRDSFSNHEMP Trigger: AGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCCATATTCACTGTTTTGATTCTATCACACTGTTGTTATCAGTCAGTGTTACTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| 3UTR-3UTR GCA 90 bp | TTTTCAATATTCACTCCTCCAGTAACACTGACTGATAACAACAGTGTGATAGAATCTCAAATCATGAAATaGCTTTGCCTTGTGTTGTGG | + |
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Preference number: 2 (lower is better) Translates to: FSIFTPPVTLTDNNSVIESQIMK*LCLVLW Trigger: CCACAACACAAGGCAAAGGCATTTCATGATTTGAGA...TTCTATCACACTGTTGTTATCAGTCAGTGTTACTGGAGGAGTGAATATTGAAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| 3UTR-3UTR CAA 90 bp | TTTTCAATATTCACTCCTCCAGTAACACTGACTGATAACAACAGTGTGATAGAAAATCATGAAATGCCTTaGCCTTGTGTTGTGGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: FSIFTPPVTLTDNNSVIENHEMP*PCVVGG Trigger: ACCACCCACAACACAAGGCAAAGGCATTTCATGATT...TTCTATCACACTGTTGTTATCAGTCAGTGTTACTGGAGGAGTGAATATTGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| 3UTR TCA 72 bp | CTGACTGATAACAACAGTGTGATAGAATCAAAACAGTaGATATGGAGGCAAAGGGACAGTTTCTCAAATCAT | + |
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Preference number: 3 (lower is better) Translates to: LTDNNSVIESKQ*IWRQRDSFSNH Trigger: ATGATTTGAGAAACTGTCCCTTTGCCTCCATATTCACTGTTTTGATTCTATCACACTGTTGTTATCAGTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CCA 90 bp | AGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTAGGTCCCGGGATAATTaGTGCCTGCTCACCCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RQRDSFSNHEMPLPCVVGRSRDN*CLLTLR Trigger: CCTCAGGGTGAGCAGGCACCAATTATCCCGGGACCT...ACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR TCA 90 bp | AAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTGGTACTCTACAGGGACCCTTaGGTTGAGACTACCTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: KGTVSQIMKCLCLVLWVVLYRDP*VETTLG Trigger: CCCCAAGGTAGTCTCAACTCAAGGGTCCCTGTAGAG...TACCACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR GCA 90 bp | AAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTGGTAGGCCAGGGTTCTGCATaGAATGTTTGCCTCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: KGTVSQIMKCLCLVLWVVGQGSA*NVCLHS Trigger: GCTGTGGAGGCAAACATTGCATGCAGAACCCTGGCC...TACCACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CCA 90 bp | ATATGGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTCACCCTGAGGAGCTATaGCTGCCTCTTCGACCACCA | + |
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Preference number: 4 (lower is better) Translates to: IWRQRDSFSNHEMPLPCVHPEEL*LPLRPP Trigger: TGGTGGTCGAAGAGGCAGCCATAGCTCCTCAGGGTG...AACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCCATAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR GCA 90 bp | TGGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGTCTGCATGCAATGTTTaGCTCCACAGCAGTCCGGAA | + |
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Preference number: 4 (lower is better) Translates to: WRQRDSFSNHEMPLPCVVSACNV*LHSSPE Trigger: TTCCGGACTGCTGTGGAGGCAAACATTGCATGCAGA...CACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR TCA 90 bp | TGGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGAGCTTGCTTCAGTATaGTGTGGGTCTGCTTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: WRQRDSFSNHEMPLPCVVELASV*CGSASV Trigger: TACTGAAGCAGACCCACATCATACTGAAGCAAGCTC...CACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR GCA 90 bp | GGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGCTTGTTTCAGTAAGATaGGAGCTGCCTTCAGTACGA | + |
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Preference number: 4 (lower is better) Translates to: GGKGTVSQIMKCLCLVLWLVSVR*ELPSVR Trigger: TCGTACTGAAGGCAGCTCGCATCTTACTGAAACAAG...CCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR GCA 90 bp | TGTGATAGAATCAAAACAGTGAATATGGAGGCAAAGGGACAGTTTCTCAAATCATCCCGGGATAATTGGTaGCTGCTCACCCTGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: CDRIKTVNMEAKGQFLKSSRDNW*LLTLRS Trigger: GCTCCTCAGGGTGAGCAGGCACCAATTATCCCGGGA...TGATTTGAGAAACTGTCCCTTTGCCTCCATATTCACTGTTTTGATTCTATCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR GCA 90 bp | AAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTGGTAACTTCCAGCTGTTGTTaGAGCATCTCCACTAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: KGTVSQIMKCLCLVLWVVTSSCC*SISTRS Trigger: GGACCTAGTGGAGATGCTGCAACAACAGCTGGAAGT...TACCACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR TCA 90 bp | GGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTGGTAACTGGTCAAGAAAGGCATTaGTGGATGTTCGGAAGAGAA | + |
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Preference number: 4 (lower is better) Translates to: GTVSQIMKCLCLVLWVVTGQERH*WMFGRE Trigger: TTCTCTTCCGAACATCCATCAATGCCTTTCTTGACC...AGTTACCACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR GCA 90 bp | ATATGGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTCTTCTTCACCACCTaGTCTACAAACTTTGTCCCC | + |
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Preference number: 4 (lower is better) Translates to: IWRQRDSFSNHEMPLPCVVFFTT*STNFVP Trigger: GGGGACAAAGTTTGTAGAGCAGGTGGTGAAGAAGAC...AACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCCATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CCA 90 bp | ATATGGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTATCACTTGCTGCTGCTaGATATTTGAGGCCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: IWRQRDSFSNHEMPLPCVITCCC*IFEARV Trigger: AACCCTGGCCTCAAATATCCAGCAGCAGCAAGTGAT...AACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCCATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CCA 90 bp | CAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTGGTACCACAAGGGAAAGTTaGTCAAGAAAGGCATTGATG | + |
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Preference number: 4 (lower is better) Translates to: QRDSFSNHEMPLPCVVGGTTRES*SRKALM Trigger: CATCAATGCCTTTCTTGACCAACTTTCCCTTGTGGT...ACCACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR GCA 90 bp | TCAATATTCACTCCTCCAGTAACACTGACTGATAACAACAGTGTGATAGAATCATTGAGGCCAGGGTTCTaGATGCAATGTTTGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SIFTPPVTLTDNNSVIESLRPGF*MQCLPP Trigger: TGGAGGCAAACATTGCATGCAGAACCCTGGCCTCAA...TGATTCTATCACACTGTTGTTATCAGTCAGTGTTACTGGAGGAGTGAATATTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CCA 90 bp | ATATGGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTTGCTTCAGTATGATGTaGGTCTGCTTCAGTATCATG | + |
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Preference number: 4 (lower is better) Translates to: IWRQRDSFSNHEMPLPCVCFSMM*VCFSIM Trigger: CATGATACTGAAGCAGACCCACATCATACTGAAGCA...AACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCCATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CCA 90 bp | AAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTGGTATGCACGATTTACATGTaGAGAGTTATCATGGCCATT | + |
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Preference number: 4 (lower is better) Translates to: KGTVSQIMKCLCLVLWVVCTIYM*RVIMAI Trigger: AATGGCCATGATAACTCTCCACATGTAAATCGTGCA...TACCACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR TCA 90 bp | TTTTCAATATTCACTCCTCCAGTAACACTGACTGATAACAACAGTGTGATAGAAGCCTTCAGTACGATGTaGGCTTGCTTCAGTATGATG | + |
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Preference number: 4 (lower is better) Translates to: FSIFTPPVTLTDNNSVIEAFSTM*ACFSMM Trigger: CATCATACTGAAGCAAGCTCACATCGTACTGAAGGC...TTCTATCACACTGTTGTTATCAGTCAGTGTTACTGGAGGAGTGAATATTGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CCA 90 bp | TTTTCAATATTCACTCCTCCAGTAACACTGACTGATAACAACAGTGTGATAGAATGTGGAGAGTTATCATaGCCATTCTCTGCTTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: FSIFTPPVTLTDNNSVIECGELS*PFSASE Trigger: TTCTGAAGCAGAGAATGGCCATGATAACTCTCCACA...TTCTATCACACTGTTGTTATCAGTCAGTGTTACTGGAGGAGTGAATATTGAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CCA 90 bp | TGGGTACCAACATCTTGTGCACGATTTACATGTGGAGAGTTATCATaGCCATTCTCTGCTTCAGAAGGACGTGAGCTTGTTTCAGTAAGA | + |
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Preference number: 5 (lower is better) Translates to: WVPTSCARFTCGELS*PFSASEGRELVSVR Trigger: TCTTACTGAAACAAGCTCACGTCCTTCTGAAGCAGAGAATGGCCATGATAACTCTCCACATGTAAATCGTGCACAAGATGTTGGTACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CAA 90 bp | GGAGGCAAAGGGACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGCTTCCTCTTCCTTGTTaGAAGACAGCCATAAACACT | + |
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Preference number: 5 (lower is better) Translates to: GGKGTVSQIMKCLCLVLWLPLPC*KTAINT Trigger: AGTGTTTATGGCTGTCTTCAAACAAGGAAGAGGAAG...CCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGTCCCTTTGCCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CAA 90 bp | TTCACTCCTCCAGTAACACTGACTGATAACAACAGTGTGATAGAATCAAAACAGCACCACAAGGGAAAGTaGGTCAAGAAAGGCATTGAT | + |
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Preference number: 5 (lower is better) Translates to: FTPPVTLTDNNSVIESKQHHKGK*VKKGID Trigger: ATCAATGCCTTTCTTGACCAACTTTCCCTTGTGGTG...CTGTTTTGATTCTATCACACTGTTGTTATCAGTCAGTGTTACTGGAGGAGTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS-3UTR CAA 90 bp | ACAGTTTCTCAAATCATGAAATGCCTTTGCCTTGTGTTGTGGGTGGTAACTAGAATTTCTTCCTCTTCCTaGTTTGAAGACAGCCATAAA | + |
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Preference number: 5 (lower is better) Translates to: TVSQIMKCLCLVLWVVTRISSSS*FEDSHK Trigger: TTTATGGCTGTCTTCAAACAAGGAAGAGGAAGAAAT...TCTAGTTACCACCCACAACACAAGGCAAAGGCATTTCATGATTTGAGAAACTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS GCA 72 bp | GATAATTGGTGCCTGCTCACCCTGAGGAGCTATGGCTaGCTCTTCGACCACCACTCTTGCCTCTACAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: DNWCLLTLRSYG*LFDHHSCLYRD Trigger: GTCCCTGTAGAGGCAAGAGTGGTGGTCGAAGAGGCAGCCATAGCTCCTCAGGGTGAGCAGGCACCAATTATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS GCA 72 bp | TGTTGCAGCATCTCCACTAGGTCCCGGGATAATTGGTaGCTGCTCACCCTGAGGAGCTATGGCTGCCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: CCSISTRSRDNW*LLTLRSYGCLF Trigger: GAAGAGGCAGCCATAGCTCCTCAGGGTGAGCAGGCACCAATTATCCCGGGACCTAGTGGAGATGCTGCAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CCA 72 bp | TGTTGTTGCAGCATCTCCACTAGGTCCCGGGATAATTaGTGCCTGCTCACCCTGAGGAGCTATGGCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: CCCSISTRSRDN*CLLTLRSYGCL Trigger: GAGGCAGCCATAGCTCCTCAGGGTGAGCAGGCACCAATTATCCCGGGACCTAGTGGAGATGCTGCAACAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CCA 72 bp | CAGTATGATGTGGGTCTGCTTCAGTATCATGGACTCTaGATGTGTGCTGTCCATCCTCCCCGTCTTCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: QYDVGLLQYHGL*MCAVHPPRLLH Trigger: GTGAAGAAGACGGGGAGGATGGACAGCACACATCCAGAGTCCATGATACTGAAGCAGACCCACATCATACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CAA 72 bp | ACTCCTGCTGAACCATCACTTGCTGCTGCTGGATATTaGAGGCCAGGGTTCTGCATGCAATGTTTGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: TPAEPSLAAAGY*RPGFCMQCLPP Trigger: TGGAGGCAAACATTGCATGCAGAACCCTGGCCTCAAATATCCAGCAGCAGCAAGTGATGGTTCAGCAGGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS GCA 72 bp | TACGGAAAATTCCAAGAGTCGACTTCCAGCTGTTGTTaGAGCATCTCCACTAGGTCCCGGGATAATTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: YGKFQESTSSCC*SISTRSRDNWC Trigger: GCACCAATTATCCCGGGACCTAGTGGAGATGCTGCAACAACAGCTGGAAGTCGACTCTTGGAATTTTCCGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CAA 72 bp | CACTGGGCGTGGGATGTTTCTCACCACAAGGGAAAGTaGGTCAAGAAAGGCATTGATGGATGTTCGGAAGAG | + |
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Preference number: 6 (lower is better) Translates to: HWAWDVSHHKGK*VKKGIDGCSEE Trigger: CTCTTCCGAACATCCATCAATGCCTTTCTTGACCAACTTTCCCTTGTGGTGAGAAACATCCCACGCCCAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS GCA 72 bp | TCTGCTTCAGAAGGACGTGAGCTTGTTTCAGTAAGATaGGAGCTGCCTTCAGTACGATGTGAGCTTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SASEGRELVSVR*ELPSVRCELAS Trigger: TGAAGCAAGCTCACATCGTACTGAAGGCAGCTCGCATCTTACTGAAACAAGCTCACGTCCTTCTGAAGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CAA 90 bp | AGCCATAAACACTGGGCGTGGGATGTTTCTCACCACAAGGGAAAGTaGGTCAAGAAAGGCATTGATGGATGTTCGGAAGAGAACAGGATC | + |
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Preference number: 6 (lower is better) Translates to: SHKHWAWDVSHHKGK*VKKGIDGCSEENRI Trigger: GATCCTGTTCTCTTCCGAACATCCATCAATGCCTTTCTTGACCAACTTTCCCTTGTGGTGAGAAACATCCCACGCCCAGTGTTTATGGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CCA 72 bp | AGCCTGGGTACCAACATCTTGTGCACGATTTACATGTaGAGAGTTATCATGGCCATTCTCTGCTTCAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: SLGTNILCTIYM*RVIMAILCFRR Trigger: CCTTCTGAAGCAGAGAATGGCCATGATAACTCTCCACATGTAAATCGTGCACAAGATGTTGGTACCCAGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CCA 72 bp | TCTTCCTTGTTTGAAGACAGCCATAAACACTGGGCGTaGGATGTTTCTCACCACAAGGGAAAGTTGGTCAAG | + |
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Preference number: 6 (lower is better) Translates to: SSLFEDSHKHWA*DVSHHKGKLVK Trigger: CTTGACCAACTTTCCCTTGTGGTGAGAAACATCCCACGCCCAGTGTTTATGGCTGTCTTCAAACAAGGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CCA 72 bp | TCTTCCTCTTCCTTGTTTGAAGACAGCCATAAACACTaGGCGTGGGATGTTTCTCACCACAAGGGAAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SSSSLFEDSHKH*AWDVSHHKGKL Trigger: CAACTTTCCCTTGTGGTGAGAAACATCCCACGCCCAGTGTTTATGGCTGTCTTCAAACAAGGAAGAGGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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| CDS CCA 72 bp | ACATCTTGTGCACGATTTACATGTGGAGAGTTATCATaGCCATTCTCTGCTTCAGAAGGACGTGAGCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: TSCARFTCGELS*PFSASEGRELV Trigger: AACAAGCTCACGTCCTTCTGAAGCAGAGAATGGCCATGATAACTCTCCACATGTAAATCGTGCACAAGATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033524.3 |
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