Pregenerated sensors for CT55 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055555Ensembl transcript IDs: ENSMUST00000069209.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCAAAATTGAAGGCATCTGTGACTTTAAATTACACACATTCACTTaGTGGCCTCCCTCTGCATGTCTCTCAATCAATAAACAAAGCCAC | + |
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Preference number: 1 (lower is better) Translates to: LKIEGICDFKLHTFT*WPPSACLSINKQSH Trigger: GTGGCTTTGTTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCCTTCAATTTTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| 3UTR-3UTR GCA 90 bp | CATTCACTTGCTGGCCTCCCTCTGCATGTCTCTCAATCAATAAACAAAGCCACTGTTTTGGCTAACTGTTaGTATTCCTATTCTACAAAC | + |
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Preference number: 2 (lower is better) Translates to: HSLAGLPLHVSQSINKATVLANC*YSYSTN Trigger: GTTTGTAGAATAGGAATAGCAACAGTTAGCCAAAAC...AGTGGCTTTGTTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| 3UTR-3UTR GCA 90 bp | TTGAAGGCATCTGTGACTTTAAATTACACACATTCACTTGCTGGCCTCCCTCTGTATTCTACAAACTATTaGATTAAACCAGGCCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: LKASVTLNYTHSLAGLPLYSTNY*IKPGPS Trigger: TGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATA...CAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCCTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| 3UTR GCA 72 bp | GAAGGCATCTGTGACTTTAAATTACACACATTCACTTaGTGGCCTCCCTCTGCATGTCTCTCAATCAATAAA | + |
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Preference number: 3 (lower is better) Translates to: EGICDFKLHTFT*WPPSACLSINK Trigger: TTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCCTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| 3UTR CCA 72 bp | GGCATCTGTGACTTTAAATTACACACATTCACTTGCTaGCCTCCCTCTGCATGTCTCTCAATCAATAAACAA | + |
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Preference number: 3 (lower is better) Translates to: GICDFKLHTFTC*PPSACLSINKQ Trigger: TTGTTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CCA 90 bp | CATTCACTTGCTGGCCTCCCTCTGCATGTCTCTCAATCAATAAACAAAGCCACTGAGGCTTCACCAAGATaGCCCTTCTGCTCTGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: HSLAGLPLHVSQSINKATEASPR*PFCSGC Trigger: ACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCTC...AGTGGCTTTGTTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CCA 90 bp | TTGAAGGCATCTGTGACTTTAAATTACACACATTCACTTGCTGGCCTCCCTCTGTCTGCCGCTCTTCTTTaGCCTCCTTCGGGTCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LKASVTLNYTHSLAGLPLSAALL*PPSGLL Trigger: AAGCAGACCCGAAGGAGGCCAAAGAAGAGCGGCAGA...CAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCCTTCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR TCA 90 bp | CATTCACTTGCTGGCCTCCCTCTGCATGTCTCTCAATCAATAAACAAAGCCACTTCTCATGTGAGATTCTaGGGGTTCTTCATCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: HSLAGLPLHVSQSINKATSHVRF*GFFIMV Trigger: GACCATGATGAAGAACCCTCAGAATCTCACATGAGA...AGTGGCTTTGTTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGGCATCTGTGACTTTAAATTACACACATTCACTTGCTGGCCTCCCTCTGACAACATCATCTGGTTaGGGCACATATCCAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: LKASVTLNYTHSLAGLPLTTSSG*GTYPEG Trigger: TCCTTCTGGATATGTGCCGCAACCAGATGATGTTGT...CAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCCTTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CCA 90 bp | CATTCACTTGCTGGCCTCCCTCTGCATGTCTCTCAATCAATAAACAAAGCCACTGAGGGTTCTTCATCATaGTCATTATCCACTGTGACT | + |
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Preference number: 4 (lower is better) Translates to: HSLAGLPLHVSQSINKATEGSSS*SLSTVT Trigger: AGTCACAGTGGATAATGACCATGATGAAGAACCCTC...AGTGGCTTTGTTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR TCA 90 bp | CATTCACTTGCTGGCCTCCCTCTGCATGTCTCTCAATCAATAAACAAAGCCACTAGCAAAATTCTCATGTaGGATTCTGAGGGTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: HSLAGLPLHVSQSINKATSKILM*DSEGSS Trigger: TGAAGAACCCTCAGAATCTCACATGAGAATTTTGCT...AGTGGCTTTGTTTATTGATTGAGAGACATGCAGAGGGAGGCCAGCAAGTGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR TCA 90 bp | TGTTGCTATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCGCACTGCAACCACATTaGCAACATCATCTGGTTGCG | + |
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Preference number: 4 (lower is better) Translates to: CCYSYSTNYCIKPGPSLPALQPH*QHHLVA Trigger: CGCAACCAGATGATGTTGTCAATGTGGTTGCAGTGC...GGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATAGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR GCA 90 bp | GTTTTGGCTAACTGTTGCTATTCCTATTCTACAAACTATTGCATTAAACCAGGCTCTTCCAAGAGCTTCTaGCGCTCTTCTTTGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: VLANCCYSYSTNYCIKPGSSKSF*RSSLAS Trigger: GGAGGCCAAAGAAGAGCGGCAGAAGCTCTTGGAAGA...GCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATAGCAACAGTTAGCCAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR GCA 90 bp | AAATGTTTGGGGATGTTTTCCAGTAGATCAGGCACCTTTCTAAAGTTAGTTCATCCAAGATGGCCCTTCTaGTCTGGGTGTCTTGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: KCLGMFSSRSGTFLKLVHPRWPF*SGCLAH Trigger: ATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGG...ATGAACTAACTTTAGAAAGGTGCCTGATCTACTGGAAAACATCCCCAAACATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR GCA 90 bp | TTGAAGGCATCTGTGACTTTAAATTACACACATTCACTTGCTGGCCTCCCTCTGAATAGTTGGATTGCATaGTCTGCACTGCAACCACAT | + |
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Preference number: 4 (lower is better) Translates to: LKASVTLNYTHSLAGLPLNSWIA*SALQPH Trigger: ATGTGGTTGCAGTGCAGAGCATGCAATCCAACTATT...CAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCCTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR TCA 90 bp | AAATGTTTGGGGATGTTTTCCAGTAGATCAGGCACCTTTCTAAAGTTAGTTCATGGGTCTGCTTTCCTTTaGAAGAAGGCACGAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: KCLGMFSSRSGTFLKLVHGSAFL*KKARSL Trigger: CAGACTTCGTGCCTTCTTTCAAAGGAAAGCAGACCC...ATGAACTAACTTTAGAAAGGTGCCTGATCTACTGGAAAACATCCCCAAACATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CCA 90 bp | GTTTTGGCTAACTGTTGCTATTCCTATTCTACAAACTATTGCATTAAACCAGGCATGGCCCTTCTGCTCTaGGTGTCTTGCTCATCAGAA | + |
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Preference number: 4 (lower is better) Translates to: VLANCCYSYSTNYCIKPGMALLL*VSCSSE Trigger: TTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCAT...GCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATAGCAACAGTTAGCCAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR TCA 90 bp | TATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCATACAAGGTCATTATCCACTGTaGCTGCGTTCAATCCACGAG | + |
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Preference number: 4 (lower is better) Translates to: YSYSTNYCIKPGPSLPIQGHYPL*LRSIHE Trigger: CTCGTGGATTGAACGCAGTCACAGTGGATAATGACC...TTGTATGGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR GCA 90 bp | TATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCATACAATTGTTCTTCCACAGCTaGAGGAAGGTTTGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: YSYSTNYCIKPGPSLPIQLFFHS*RKVWLS Trigger: GCTGAGCCAAACCTTCCTGCAGCTGTGGAAGAACAA...TTGTATGGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CCA 90 bp | TATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCATACAAAGCTGCAGGAAGGTTTaGCTCAGCTTTCAGAGGATT | + |
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Preference number: 4 (lower is better) Translates to: YSYSTNYCIKPGPSLPIQSCRKV*LSFQRI Trigger: AATCCTCTGAAAGCTGAGCCAAACCTTCCTGCAGCT...TTGTATGGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CCA 90 bp | TGTTGCTATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCCGGACCTCATTTAAATaGCAATGTTTCAGAGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: CCYSYSTNYCIKPGPSLPRTSFK*QCFRGF Trigger: GAAGCCTCTGAAACATTGCCATTTAAATGAGGTCCG...GGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATAGCAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CCA 90 bp | AAATGTTTGGGGATGTTTTCCAGTAGATCAGGCACCTTTCTAAAGTTAGTTCATCTCTCCAGAAATAGTTaGATTGCATGCTCTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: KCLGMFSSRSGTFLKLVHLSRNS*IACSAL Trigger: CAGTGCAGAGCATGCAATCCAACTATTTCTGGAGAG...ATGAACTAACTTTAGAAAGGTGCCTGATCTACTGGAAAACATCCCCAAACATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR GCA 90 bp | TATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCATACAATGGGGTCATTGCAACTaGTCTCCAGAAATAGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: YSYSTNYCIKPGPSLPIQWGHCN*SPEIVG Trigger: TCCAACTATTTCTGGAGAGCAGTTGCAATGACCCCA...TTGTATGGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS GCA 90 bp | CACTGTGACTGCGTTCAATCCACGAGGGCTTTGTTCTTCCACAGCTaGAGGAAGGTTTGGCTCAGCTTTCAGAGGATTGTCGCCAGTCTC | + |
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Preference number: 5 (lower is better) Translates to: HCDCVQSTRALFFHS*RKVWLSFQRIVASL Trigger: GAGACTGGCGACAATCCTCTGAAAGCTGAGCCAAACCTTCCTGCAGCTGTGGAAGAACAAAGCCCTCGTGGATTGAACGCAGTCACAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CCA 90 bp | AAATGGCAATGTTTCAGAGGCTTCACCAAGATGGCCCTTCTGCTCTaGGTGTCTTGCTCATCAGAAAATTCAATTTCTACCAGGTCACCA | + |
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Preference number: 5 (lower is better) Translates to: KWQCFRGFTKMALLL*VSCSSENSISTRSP Trigger: TGGTGACCTGGTAGAAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCTCTGAAACATTGCCATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CAA 90 bp | TTGAAGGCATCTGTGACTTTAAATTACACACATTCACTTGCTGGCCTCCCTCTGCTTGTACTGGGGTCATaGCAACTGCTCTCCAGAAAT | + |
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Preference number: 5 (lower is better) Translates to: LKASVTLNYTHSLAGLPLLVLGS*QLLSRN Trigger: ATTTCTGGAGAGCAGTTGCAATGACCCCAGTACAAG...CAGAGGGAGGCCAGCAAGTGAATGTGTGTAATTTAAAGTCACAGATGCCTTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS TCA 90 bp | GCATCACCCACTAGAGAGGTGATAGAGGCAAGCAAAATTCTCATGTaGGATTCTGAGGGTTCTTCATCATGGTCATTATCCACTGTGACT | + |
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Preference number: 5 (lower is better) Translates to: ASPTREVIEASKILM*DSEGSSSWSLSTVT Trigger: AGTCACAGTGGATAATGACCATGATGAAGAACCCTCAGAATCTCACATGAGAATTTTGCTTGCCTCTATCACCTCTCTAGTGGGTGATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CCA 90 bp | CACGGACCTCATTTAAATGGCAATGTTTCAGAGGCTTCACCAAGATaGCCCTTCTGCTCTGGGTGTCTTGCTCATCAGAAAATTCAATTT | + |
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Preference number: 5 (lower is better) Translates to: HGPHLNGNVSEASPR*PFCSGCLAHQKIQF Trigger: AAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCTCTGAAACATTGCCATTTAAATGAGGTCCGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CAA 90 bp | GTTTTGGCTAACTGTTGCTATTCCTATTCTACAAACTATTGCATTAAACCAGGCCAATCCACGAGGGCTTaGTTCTTCCACAGCTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: VLANCCYSYSTNYCIKPGQSTRA*FFHSCR Trigger: CCTGCAGCTGTGGAAGAACAAAGCCCTCGTGGATTG...GCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATAGCAACAGTTAGCCAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS GCA 90 bp | CATTTAAATGGCAATGTTTCAGAGGCTTCACCAAGATGGCCCTTCTaGTCTGGGTGTCTTGCTCATCAGAAAATTCAATTTCTACCAGGT | + |
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Preference number: 5 (lower is better) Translates to: HLNGNVSEASPRWPF*SGCLAHQKIQFLPG Trigger: ACCTGGTAGAAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCTCTGAAACATTGCCATTTAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CAA 90 bp | TATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCATACAACGGGTCTGCTTTCCTTaGAAAGAAGGCACGAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: YSYSTNYCIKPGPSLPIQRVCFP*KEGTKS Trigger: AGACTTCGTGCCTTCTTTCAAAGGAAAGCAGACCCG...TTGTATGGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CAA 90 bp | GTTTTGGCTAACTGTTGCTATTCCTATTCTACAAACTATTGCATTAAACCAGGCGCCACAACTCCCTGTTaGTTTTGTAGTGAGGTAGCA | + |
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Preference number: 5 (lower is better) Translates to: VLANCCYSYSTNYCIKPGATTPC*FCSEVA Trigger: TGCTACCTCACTACAAAACAAACAGGGAGTTGTGGC...GCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATAGCAACAGTTAGCCAAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS-3UTR CAA 90 bp | TATTCCTATTCTACAAACTATTGCATTAAACCAGGCCCTTCATTACCCATACAATCAGCTTTCAGAGGATaGTCGCCAGTCTCAACGTCA | + |
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Preference number: 5 (lower is better) Translates to: YSYSTNYCIKPGPSLPIQSAFRG*SPVSTS Trigger: TGACGTTGAGACTGGCGACAATCCTCTGAAAGCTGA...TTGTATGGGTAATGAAGGGCCTGGTTTAATGCAATAGTTTGTAGAATAGGAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS TCA 90 bp | GCTCATCAGAAAATTCAATTTCTACCAGGTCACCATTATAAGGTTTaGAATCTTTACAAGCAATGTCTAGAGAGAAGGAAAATCCGTGAC | + |
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Preference number: 5 (lower is better) Translates to: AHQKIQFLPGHHYKV*NLYKQCLERRKIRD Trigger: GTCACGGATTTTCCTTCTCTCTAGACATTGCTTGTAAAGATTTCAAACCTTATAATGGTGACCTGGTAGAAATTGAATTTTCTGATGAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CAA 72 bp | ACAGCTGCAGGAAGGTTTGGCTCAGCTTTCAGAGGATaGTCGCCAGTCTCAACGTCAGCACTGGAGCGGGTG | + |
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Preference number: 6 (lower is better) Translates to: TAAGRFGSAFRG*SPVSTSALERV Trigger: CACCCGCTCCAGTGCTGACGTTGAGACTGGCGACAATCCTCTGAAAGCTGAGCCAAACCTTCCTGCAGCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CCA 72 bp | ACGAGGGCTTTGTTCTTCCACAGCTGCAGGAAGGTTTaGCTCAGCTTTCAGAGGATTGTCGCCAGTCTCAAC | + |
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Preference number: 6 (lower is better) Translates to: TRALFFHSCRKV*LSFQRIVASLN Trigger: GTTGAGACTGGCGACAATCCTCTGAAAGCTGAGCCAAACCTTCCTGCAGCTGTGGAAGAACAAAGCCCTCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CAA 72 bp | CACGAGGGCTTTGTTCTTCCACAGCTGCAGGAAGGTTaGGCTCAGCTTTCAGAGGATTGTCGCCAGTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: HEGFVLPQLQEG*AQLSEDCRQSQ Trigger: TTGAGACTGGCGACAATCCTCTGAAAGCTGAGCCAAACCTTCCTGCAGCTGTGGAAGAACAAAGCCCTCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS GCA 72 bp | TGCGTTCAATCCACGAGGGCTTTGTTCTTCCACAGCTaGAGGAAGGTTTGGCTCAGCTTTCAGAGGATTGTC | + |
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Preference number: 6 (lower is better) Translates to: CVQSTRALFFHS*RKVWLSFQRIV Trigger: GACAATCCTCTGAAAGCTGAGCCAAACCTTCCTGCAGCTGTGGAAGAACAAAGCCCTCGTGGATTGAACGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS GCA 72 bp | TTGTTTTGTAGTGAGGTAGCATCTTCCAAGAGCTTCTaGCGCTCTTCTTTGGCCTCCTTCGGGTCTGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LFCSEVASSKSF*RSSLASFGSAF Trigger: GAAAGCAGACCCGAAGGAGGCCAAAGAAGAGCGGCAGAAGCTCTTGGAAGATGCTACCTCACTACAAAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS GCA 72 bp | GGCTTCACCAAGATGGCCCTTCTGCTCTGGGTGTCTTaGTCATCAGAAAATTCAATTTCTACCAGGTCACCA | + |
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Preference number: 6 (lower is better) Translates to: GFTKMALLLWVS*SSENSISTRSP Trigger: TGGTGACCTGGTAGAAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CAA 72 bp | AGGCTTCACCAAGATGGCCCTTCTGCTCTGGGTGTCTaGCTCATCAGAAAATTCAATTTCTACCAGGTCACC | + |
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Preference number: 6 (lower is better) Translates to: RLHQDGPSALGV*LIRKFNFYQVT Trigger: GGTGACCTGGTAGAAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS GCA 72 bp | GGCAATGTTTCAGAGGCTTCACCAAGATGGCCCTTCTaGTCTGGGTGTCTTGCTCATCAGAAAATTCAATTT | + |
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Preference number: 6 (lower is better) Translates to: GNVSEASPRWPF*SGCLAHQKIQF Trigger: AAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCTCTGAAACATTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CCA 72 bp | TGTTTCAGAGGCTTCACCAAGATGGCCCTTCTGCTCTaGGTGTCTTGCTCATCAGAAAATTCAATTTCTACC | + |
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Preference number: 6 (lower is better) Translates to: CFRGFTKMALLL*VSCSSENSIST Trigger: GGTAGAAATTGAATTTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCTCTGAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS CCA 72 bp | CATTTAAATGGCAATGTTTCAGAGGCTTCACCAAGATaGCCCTTCTGCTCTGGGTGTCTTGCTCATCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: HLNGNVSEASPR*PFCSGCLAHQK Trigger: TTTCTGATGAGCAAGACACCCAGAGCAGAAGGGCCATCTTGGTGAAGCCTCTGAAACATTGCCATTTAAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS TCA 72 bp | GGTGATAGAGGCAAGCAAAATTCTCATGTGAGATTCTaGGGGTTCTTCATCATGGTCATTATCCACTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: GDRGKQNSHVRF*GFFIMVIIHCD Trigger: GTCACAGTGGATAATGACCATGATGAAGAACCCTCAGAATCTCACATGAGAATTTTGCTTGCCTCTATCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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| CDS TCA 72 bp | ACTAGAGAGGTGATAGAGGCAAGCAAAATTCTCATGTaGGATTCTGAGGGTTCTTCATCATGGTCATTATCC | + |
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Preference number: 6 (lower is better) Translates to: TREVIEASKILM*DSEGSSSWSLS Trigger: GGATAATGACCATGATGAAGAACCCTCAGAATCTCACATGAGAATTTTGCTTGCCTCTATCACCTCTCTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069209.2 |
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