Pregenerated sensors for CSTL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055177Ensembl transcript IDs: ENSMUST00000109952.2, ENSMUST00000109954.8, ENSMUST00000109955.10
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTGTCAGCAGAGCTGTAGGTGTCGTTGCTTaGGTTGTTGTAAGAGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: TTGSTTSTHHRHLGVSRAVGVVA*VVVRAD Trigger: ATCCGCTCTTACAACAACGCAAGCAACGACACCTAC...AGCTCTGCTGACACCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR GCA 90 bp | TACAATTTTACACACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTTCAGCTTGCTGCTTTaGAGGGGGCAGGAGGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: YNFTHHRQYNQYTPQASGFSLLL*RGQEAF Trigger: GAAAGCCTCCTGCCCCCTGCAAAGCAGCAAGCTGAA...CCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGTGTGTAAAATTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR GCA 90 bp | ACAACCAGTACACACCACAGGCATCTGGGTGTCAGCAGAGCTCTTTACATAGACTCTTTTTCAGCTTGCTaGTTTGCAGGGGGCAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TTSTHHRHLGVSRALYIDSFSAC*FAGGRR Trigger: CCTCCTGCCCCCTGCAAAGCAGCAAGCTGAAAAAGA...GTCTATGTAAAGAGCTCTGCTGACACCCAGATGCCTGTGGTGTGTACTGGTTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR TCA 90 bp | ACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTGTCAGCAGAGCTAATGGAGTGTCGAGTTaGTGTTTTTCTTGCTCATGG | + |
|
Preference number: 4 (lower is better) Translates to: TTGSTTSTHHRHLGVSRANGVSS*CFSCSW Trigger: CCATGAGCAAGAAAAACATCAACTCGACACTCCATT...AGCTCTGCTGACACCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR GCA 90 bp | CCTCTTACAATTTTACACACCACAGGCAGTACAACCAGTACACACCACAGGCATGGCTCTTTTTCAGCTTaGTGCTTTGCAGGGGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: PLTILHTTGSTTSTHHRHGSFSA*CFAGGR Trigger: CCTGCCCCCTGCAAAGCAGCAAGCTGAAAAAGAGCC...ATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGTGTGTAAAATTGTAAGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR GCA 90 bp | AATTTTACACACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTGTACAAGTAGGTGTCGTTaGTTGCGTTGTTGTAAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: NFTHHRQYNQYTPQASGCTSRCR*LRCCKS Trigger: GCTCTTACAACAACGCAAGCAACGACACCTACTTGT...ACACCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGTGTGTAAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR TCA 90 bp | CTTACAATTTTACACACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGTGTTGTAAGAGCGGATaGAAAAATGGAGTGTCGAGT | + |
|
Preference number: 4 (lower is better) Translates to: LTILHTTGSTTSTHHRHLCCKSG*KNGVSS Trigger: ACTCGACACTCCATTTTTTCATCCGCTCTTACAACA...CAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGTGTGTAAAATTGTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR TCA 90 bp | TACAATTTTACACACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTACAGAGTATATCAGTaGTTTGCAAATCAGGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: YNFTHHRQYNQYTPQASGYRVYQ*FANQAL Trigger: AAGAGCCTGATTTGCAAATCACTGATATACTCTGTA...CCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGTGTGTAAAATTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR CAA 90 bp | CAATTTTACACACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTGTTTCAGCTTGCTGCTTaGCAGGGGGCAGGAGGCTTT | + |
|
Preference number: 5 (lower is better) Translates to: QFYTPQAVQPVHTTGIWVFQLAA*QGAGGF Trigger: AAAGCCTCCTGCCCCCTGCAAAGCAGCAAGCTGAAA...CACCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGTGTGTAAAATTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR CAA 90 bp | CAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTGTCAGCAGAGCTCTTTGAGTTGATGTTTTTCTaGCTCATGGCCTTCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: QAVQPVHTTGIWVSAELFELMFF*LMAFSL Trigger: CAAGGAGAAGGCCATGAGCAAGAAAAACATCAACTC...AAAGAGCTCTGCTGACACCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR CAA 90 bp | CAGTACAACCAGTACACACCACAGGCATCTGGGTGTCAGCAGAGCTCTTTACATAGTAGGTGTCGTTGCTaGCGTTGTTGTAAGAGCGGA | + |
|
Preference number: 5 (lower is better) Translates to: QYNQYTPQASGCQQSSLHSRCRC*RCCKSG Trigger: TCCGCTCTTACAACAACGCAAGCAACGACACCTACT...ATGTAAAGAGCTCTGCTGACACCCAGATGCCTGTGGTGTGTACTGGTTGTACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS-3UTR CAA 90 bp | CACACCACAGGCAGTACAACCAGTACACACCACAGGCATCTGGGTGTCAGCAGAAAATGGAGTGTCGAGTaGATGTTTTTCTTGCTCATG | + |
|
Preference number: 5 (lower is better) Translates to: HTTGSTTSTHHRHLGVSRKWSVE*MFFLLM Trigger: CATGAGCAAGAAAAACATCAACTCGACACTCCATTT...TCTGCTGACACCCAGATGCCTGTGGTGTGTACTGGTTGTACTGCCTGTGGTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109955.10 |
||
| CDS GCA 72 bp | TCAGTGATTTGCAAATCAGGCTCTTTTTCAGCTTGCTaGTTTGCAGGGGGCAGGAGGCTTTCTTCGTCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: SVICKSGSFSAC*FAGGRRLSSSH Trigger: ATGAGACGAAGAAAGCCTCCTGCCCCCTGCAAAGCAGCAAGCTGAAAAAGAGCCTGATTTGCAAATCACTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000109952.2 ENSMUST00000109954.8 ENSMUST00000109955.10 |
||
| CDS GCA 72 bp | ATATCAGTGATTTGCAAATCAGGCTCTTTTTCAGCTTaGTGCTTTGCAGGGGGCAGGAGGCTTTCTTCGTCT | + |
|
Preference number: 6 (lower is better) Translates to: ISVICKSGSFSA*CFAGGRRLSSS Trigger: AGACGAAGAAAGCCTCCTGCCCCCTGCAAAGCAGCAAGCTGAAAAAGAGCCTGATTTGCAAATCACTGATAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000109952.2 ENSMUST00000109954.8 ENSMUST00000109955.10 |
||
| CDS CAA 72 bp | TATATCAGTGATTTGCAAATCAGGCTCTTTTTCAGCTaGCTGCTTTGCAGGGGGCAGGAGGCTTTCTTCGTC | + |
|
Preference number: 6 (lower is better) Translates to: YISDLQIRLFFS*LLCRGQEAFFV Trigger: GACGAAGAAAGCCTCCTGCCCCCTGCAAAGCAGCAAGCTGAAAAAGAGCCTGATTTGCAAATCACTGATATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000109952.2 ENSMUST00000109954.8 ENSMUST00000109955.10 |
||