Pregenerated sensors for CSTDC5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071561Ensembl transcript IDs: ENSMUST00000138796.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | TCAGGTCACTTTAGAATTTGCTGCTTAGAAGTAGGTCAGCTCATCATCCTTGGTGAAATGAAGGTACAGTaGGGGCAACAGGAAACAACT | + |
|
Preference number: 3 (lower is better) Translates to: SGHFRICCLEVGQLIILGEMKVQ*GQQETT Trigger: AGTTGTTTCCTGTTGCCCCAACTGTACCTTCATTTC...ACCAAGGATGATGAGCTGACCTACTTCTAAGCAGCAAATTCTAAAGTGACCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138796.2 |
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| 3UTR CCA 72 bp | AATTTGCTGCTTAGAAGTAGGTCAGCTCATCATCCTTaGTTTTGTCAGTCTGGTAACCATGAAGTTCATAAT | + |
|
Preference number: 3 (lower is better) Translates to: NLLLRSRSAHHP*FCQSGNHEVHN Trigger: ATTATGAACTTCATGGTTACCAGACTGACAAAACCAAGGATGATGAGCTGACCTACTTCTAAGCAGCAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138796.2 |
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| CDS-3UTR CCA 90 bp | GGTCACTTTAGAATTTGCTGCTTAGAAGTAGGTCAGCTCATCATCCTTGGTTTTTTGTCAGCAATCTTCTaGATTTCTGGTGTGGCACGG | + |
|
Preference number: 4 (lower is better) Translates to: GHFRICCLEVGQLIILGFLSAIF*ISGVAR Trigger: CCGTGCCACACCAGAAATCCAGAAGATTGCTGACAA...AAAACCAAGGATGATGAGCTGACCTACTTCTAAGCAGCAAATTCTAAAGTGACC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000138796.2 |
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| CDS-3UTR TCA 90 bp | CTCATCATCCTTGGTTTTGTCAGTCTGGTAACCATGAAGTTCATAATTATCTTTGTTTTTGCTTCAAGCTaGGGTCTGACCTTGTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LIILGFVSLVTMKFIIIFVFASS*GLTLSA Trigger: TGCTGACAAGGTCAGACCTCAGCTTGAAGCAAAAAC...AAAGATAATTATGAACTTCATGGTTACCAGACTGACAAAACCAAGGATGATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000138796.2 |
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