Pregenerated sensors for CSTDC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027446Ensembl transcript IDs: ENSMUST00000028937.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACTTGCACAGCTTCTTAAGCCTGTAATTGCTGATTCCTATGAATaGCAGTATCCTCAGAGCAAGGAGCAGGACTGGATCAGTGCTGTA | + |
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Preference number: 1 (lower is better) Translates to: TLAQLLKPVIADSYE*QYPQSKEQDWISAV Trigger: TACAGCACTGATCCAGTCCTGCTCCTTGCTCTGAGGATACTGCCATTCATAGGAATCAGCAATTACAGGCTTAAGAAGCTGTGCAAGTGT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| 3UTR-3UTR CCA 90 bp | TTTCTAAAATTCCAGGACATGAAACTGCAGACACTTGCACAGCTTCTTAAGCCTGCTGATTCCTATGAATaGCAGTATCCTCAGAGCAAG | + |
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Preference number: 2 (lower is better) Translates to: FLKFQDMKLQTLAQLLKPADSYE*QYPQSK Trigger: CTTGCTCTGAGGATACTGCCATTCATAGGAATCAGC...AGGCTTAAGAAGCTGTGCAAGTGTCTGCAGTTTCATGTCCTGGAATTTTAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| 3UTR CCA 72 bp | TATGAATGGCAGTATCCTCAGAGCAAGGAGCAGGACTaGATCAGTGCTGTAAGTAGATCCTTGTGGTGGGTC | + |
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Preference number: 3 (lower is better) Translates to: YEWQYPQSKEQD*ISAVSRSLWWV Trigger: GACCCACCACAAGGATCTACTTACAGCACTGATCCAGTCCTGCTCCTTGCTCTGAGGATACTGCCATTCATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| 3UTR CCA 72 bp | CAGCTTCTTAAGCCTGTAATTGCTGATTCCTATGAATaGCAGTATCCTCAGAGCAAGGAGCAGGACTGGATC | + |
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Preference number: 3 (lower is better) Translates to: QLLKPVIADSYE*QYPQSKEQDWI Trigger: GATCCAGTCCTGCTCCTTGCTCTGAGGATACTGCCATTCATAGGAATCAGCAATTACAGGCTTAAGAAGCTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR TCA 90 bp | GAATCTGTACAAAGGGGCATTTCTAAAATTCCAGGACATGAAACTGCAGACACTCAGGTTGAACTGTTTTaGGCCTGGGCTGCTGATGCT | + |
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Preference number: 4 (lower is better) Translates to: ESVQRGISKIPGHETADTQVELF*AWAADA Trigger: AGCATCAGCAGCCCAGGCTCAAAACAGTTCAACCTG...AGTGTCTGCAGTTTCATGTCCTGGAATTTTAGAAATGCCCCTTTGTACAGATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR CCA 90 bp | GTAATTGCTGATTCCTATGAATGGCAGTATCCTCAGAGCAAGGAGCAGGACTGGCACGAAGAAAGTTTGTaGTGGTTCTTCCTGTACTTT | + |
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Preference number: 4 (lower is better) Translates to: VIADSYEWQYPQSKEQDWHEESL*WFFLYF Trigger: AAAGTACAGGAAGAACCACCACAAACTTTCTTCGTG...CCAGTCCTGCTCCTTGCTCTGAGGATACTGCCATTCATAGGAATCAGCAATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR CCA 90 bp | AAGCCTGTAATTGCTGATTCCTATGAATGGCAGTATCCTCAGAGCAAGGAGCAGCAAATTTCATACAGATaGTTCTTGTCAGCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KPVIADSYEWQYPQSKEQQISYR*FLSASA Trigger: AGCTGAGGCTGACAAGAACCATCTGTATGAAATTTG...CTGCTCCTTGCTCTGAGGATACTGCCATTCATAGGAATCAGCAATTACAGGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR CCA 90 bp | AAGCCTGTAATTGCTGATTCCTATGAATGGCAGTATCCTCAGAGCAAGGAGCAGGAAGAAAGTTTGTGGTaGTTCTTCCTGTACTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: KPVIADSYEWQYPQSKEQEESLW*FFLYFQ Trigger: TTGAAAGTACAGGAAGAACCACCACAAACTTTCTTC...CTGCTCCTTGCTCTGAGGATACTGCCATTCATAGGAATCAGCAATTACAGGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR CCA 90 bp | CTGTACAAAGGGGCATTTCTAAAATTCCAGGACATGAAACTGCAGACACTTGCATCCTTGCTCTTTTTGTaGAATGCACTCAAAGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LYKGAFLKFQDMKLQTLASLLFL*NALKAN Trigger: GTTTGCTTTGAGTGCATTCCACAAAAAGAGCAAGGA...TGCAAGTGTCTGCAGTTTCATGTCCTGGAATTTTAGAAATGCCCCTTTGTACAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR GCA 90 bp | TTCTATGTGATGAATCTGTACAAAGGGGCATTTCTAAAATTCCAGGACATGAAAAGGCATATTCATCCTTaGTCTTTTTGTGGAATGCAC | + |
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Preference number: 4 (lower is better) Translates to: FYVMNLYKGAFLKFQDMKRHIHP*SFCGMH Trigger: GTGCATTCCACAAAAAGAGCAAGGATGAATATGCCT...TTTCATGTCCTGGAATTTTAGAAATGCCCCTTTGTACAGATTCATCACATAGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS CCA 90 bp | CAGGTAAGGGGCAGGTGTCTAGGCTTTTCTCAAATTTCATACAGATaGTTCTTGTCAGCCTCAGCTTCACGAAGAAAGTTTGTGGTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: QVRGRCLGFSQISYR*FLSASASRRKFVVV Trigger: AACCACCACAAACTTTCTTCGTGAAGCTGAGGCTGACAAGAACCATCTGTATGAAATTTGAGAAAAGCCTAGACACCTGCCCCTTACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR CAA 90 bp | CTTCTTAAGCCTGTAATTGCTGATTCCTATGAATGGCAGTATCCTCAGAGCAAGTCATACAGATGGTTCTaGTCAGCCTCAGCTTCACGA | + |
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Preference number: 5 (lower is better) Translates to: LLKPVIADSYEWQYPQSKSYRWF*SASASR Trigger: TCGTGAAGCTGAGGCTGACAAGAACCATCTGTATGA...CTTGCTCTGAGGATACTGCCATTCATAGGAATCAGCAATTACAGGCTTAAGAAG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS-3UTR CAA 90 bp | TACAAAGGGGCATTTCTAAAATTCCAGGACATGAAACTGCAGACACTTGCACAGCTTCACGAAGAAAGTTaGTGGTGGTTCTTCCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: YKGAFLKFQDMKLQTLAQLHEES*WWFFLY Trigger: GTACAGGAAGAACCACCACAAACTTTCTTCGTGAAG...CTGTGCAAGTGTCTGCAGTTTCATGTCCTGGAATTTTAGAAATGCCCCTTTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS GCA 72 bp | TTTATCGAGTTCGAGAGTATCCTCTTCCGAACACCATaGCTGAGCTCCCTGGACATAGATACCAGAGAGAGC | + |
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Preference number: 6 (lower is better) Translates to: FIEFESILFRTP*LSSLDIDTRES Trigger: GCTCTCTCTGGTATCTATGTCCAGGGAGCTCAGGCATGGTGTTCGGAAGAGGATACTCTCGAACTCGATAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS CAA 90 bp | AGGGGCAGGTGTCTAGGCTTTTCTCAAATTTCATACAGATGGTTCTaGTCAGCCTCAGCTTCACGAAGAAAGTTTGTGGTGGTTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: RGRCLGFSQISYRWF*SASASRRKFVVVLP Trigger: AGGAAGAACCACCACAAACTTTCTTCGTGAAGCTGAGGCTGACAAGAACCATCTGTATGAAATTTGAGAAAAGCCTAGACACCTGCCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS TCA 72 bp | CTCAGAACAAGTCATTTTCAACAGGTTGAACTGTTTTaGGCCTGGGCTGCTGATGCTGAAGGAACAGATGAG | + |
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Preference number: 6 (lower is better) Translates to: LRTSHFQQVELF*AWAADAEGTDE Trigger: CTCATCTGTTCCTTCAGCATCAGCAGCCCAGGCTCAAAACAGTTCAACCTGTTGAAAATGACTTGTTCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS TCA 72 bp | ATGCACTCAAAGCAAACTTCACTATGTCAGGTTCACTaGCTAGTTTATCGAGTTCGAGAGTATCCTCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: MHSKQTSLCQVH*LVYRVREYPLP Trigger: CGGAAGAGGATACTCTCGAACTCGATAAACTAGTCAGTGAACCTGACATAGTGAAGTTTGCTTTGAGTGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS CCA 72 bp | TCTTGTCAGCCTCAGCTTCACGAAGAAAGTTTGTGGTaGTTCTTCCTGTACTTTCAAGAAATTCATGATGTG | + |
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Preference number: 6 (lower is better) Translates to: SCQPQLHEESLW*FFLYFQEIHDV Trigger: CACATCATGAATTTCTTGAAAGTACAGGAAGAACCACCACAAACTTTCTTCGTGAAGCTGAGGCTGACAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS CAA 72 bp | GATGGTTCTTGTCAGCCTCAGCTTCACGAAGAAAGTTaGTGGTGGTTCTTCCTGTACTTTCAAGAAATTCAT | + |
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Preference number: 6 (lower is better) Translates to: DGSCQPQLHEES*WWFFLYFQEIH Trigger: ATGAATTTCTTGAAAGTACAGGAAGAACCACCACAAACTTTCTTCGTGAAGCTGAGGCTGACAAGAACCATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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| CDS CAA 72 bp | TGTCTAGGCTTTTCTCAAATTTCATACAGATGGTTCTaGTCAGCCTCAGCTTCACGAAGAAAGTTTGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: CLGFSQISYRWF*SASASRRKFVV Trigger: CACCACAAACTTTCTTCGTGAAGCTGAGGCTGACAAGAACCATCTGTATGAAATTTGAGAAAAGCCTAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028937.3 |
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