Pregenerated sensors for CSTDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027444Ensembl transcript IDs: ENSMUST00000028933.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTaGGCTACGGATAGTCATACTCCAGAGGACGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: EILLIALAPHRP*ATDSHTPEDGR Trigger: TCTCCCGTCCTCTGGAGTATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR CCA 90 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATGTCAGGATGGTGAAGTaGGAAAACCAAGGTCTCGCA | + |
|
Preference number: 4 (lower is better) Translates to: EILLIALAPHRPWATDSHVRMVK*ENQGLA Trigger: TGCGAGACCTTGGTTTTCCCACTTCACCATCCTGAC...ATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR TCA 90 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATCTGGGTTGTTGTCATTaGACTGAGCCACAGCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: EILLIALAPHRPWATDSHLGCCH*TEPQQT Trigger: AGTTTGCTGTGGCTCAGTTCAATGACAACAACCCAG...ATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR CCA 90 bp | ATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATACTGTCCATGTCTTTTTCTaGGCTCTGCCAACTTCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: ILLIALAPHRPWATDSHTVHVFF*ALPTSS Trigger: GCTCGAAGTTGGCAGAGCCCAGAAAAAGACATGGAC...AGTATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR GCA 90 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATTGGTCCATATATGAGTaGCTAGCACAACCAGTCCTA | + |
|
Preference number: 4 (lower is better) Translates to: EILLIALAPHRPWATDSHWSIYE*LAQPVL Trigger: TAGGACTGGTTGTGCTAGGCACTCATATATGGACCA...ATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR CCA 90 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATGGTCTCGCATCTACTTaGAAAACACAATGCACCTTC | + |
|
Preference number: 4 (lower is better) Translates to: EILLIALAPHRPWATDSHGLAST*KTQCTF Trigger: GAAGGTGCATTGTGTTTTCCAAGTAGATGCGAGACC...ATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR TCA 90 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATTTGTTGTCATTGAACTaGGCCACAGCAAACTCTACT | + |
|
Preference number: 4 (lower is better) Translates to: EILLIALAPHRPWATDSHLLSLN*ATANST Trigger: AGTAGAGTTTGCTGTGGCTCAGTTCAATGACAACAA...ATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR GCA 90 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATGTTTCTTACAAATTGTaGGGCCCATCTCCAAATCCA | + |
|
Preference number: 4 (lower is better) Translates to: EILLIALAPHRPWATDSHVSYKL*GPSPNP Trigger: TGGATTTGGAGATGGGCCGCACAATTTGTAAGAAAC...ATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR CAA 90 bp | GAGATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATGCACCTTCTTTTCTCTaGAGCCTTGTAGCAATGGGC | + |
|
Preference number: 5 (lower is better) Translates to: EILLIALAPHRPWATDSHAPSFL*SLVAMG Trigger: GCCCATTGCTACAAGGCTCAAGAGAAAAGAAGGTGC...ATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAATCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS-3UTR CAA 90 bp | ATTCTTTTAATTGCATTAGCACCACACAGACCTTGGGCTACGGATAGTCATACTAGGTCTCGCATCTACTaGGAAAACACAATGCACCTT | + |
|
Preference number: 5 (lower is better) Translates to: ILLIALAPHRPWATDSHTRSRIY*ENTMHL Trigger: AAGGTGCATTGTGTTTTCCAAGTAGATGCGAGACCT...AGTATGACTATCCGTAGCCCAAGGTCTGTGTGGTGCTAATGCAATTAAAAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS TCA 90 bp | CAACTTCGAGCAACTTGTATGTGTTCTCTTCTGGGTTGTTGTCATTaGACTGAGCCACAGCAAACTCTACTGATGCCACAAAATAATCTA | + |
|
Preference number: 5 (lower is better) Translates to: QLRATCMCSLLGCCH*TEPQQTLLMPQNNL Trigger: TAGATTATTTTGTGGCATCAGTAGAGTTTGCTGTGGCTCAGTTCAATGACAACAACCCAGAAGAGAACACATACAAGTTGCTCGAAGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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| CDS TCA 72 bp | GCAACTTGTATGTGTTCTCTTCTGGGTTGTTGTCATTaGACTGAGCCACAGCAAACTCTACTGATGCCACAA | + |
|
Preference number: 6 (lower is better) Translates to: ATCMCSLLGCCH*TEPQQTLLMPQ Trigger: TTGTGGCATCAGTAGAGTTTGCTGTGGCTCAGTTCAATGACAACAACCCAGAAGAGAACACATACAAGTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028933.3 |
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