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Pregenerated sensors for CSTB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005054

Ensembl transcript IDs: ENSMUST00000005185.8

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp ACGCAGTTTGAGAATCACAACAGAAGCTGCTCAACTCCCTTCTCTCCATCACCGGGGGGTTTTACTACGTaGTCCCAAACACAGGTGCAA +
Preference number: 2 (lower is better)
Translates to: TQFENHNRSCSTPFSPSPGGFTT*SQTQVQ
Trigger: TTGCACCTGTGTTTGGGACCACGTAGTAAAACCCCC...CGGTGATGGAGAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTGCGT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
3UTR TCA 72 bp ATAATTATTTGGAAGGATGCAAAATACAACGCAGTTTaGGAATCACAACAGAAGCTGCTCAACTCCCTTCTC +
Preference number: 3 (lower is better)
Translates to: IIIWKDAKYNAV*ESQQKLLNSLL
Trigger: GAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTGCGTTGTATTTTGCATCCTTCCAAATAATTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS-3UTR TCA 90 bp CGCAGTTTGAGAATCACAACAGAAGCTGCTCAACTCCCTTCTCTCCATCACCGATCATGGGGGAGGGGTTaGAACACCCTCAAGTGCACG +
Preference number: 4 (lower is better)
Translates to: RSLRITTEAAQLPSLHHRSWGRG*NTLKCT
Trigger: CGTGCACTTGAGGGTGTTTCAACCCCTCCCCCATGA...TCGGTGATGGAGAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS-3UTR CCA 90 bp CAGTTTGAGAATCACAACAGAAGCTGCTCAACTCCCTTCTCTCCATCACCGAGGTCTTTCGATTCAAGCTaGGACTTCACCTGGTCGGCG +
Preference number: 4 (lower is better)
Translates to: QFENHNRSCSTPFSPSPRSFDSS*DFTWSA
Trigger: CGCCGACCAGGTGAAGTCCCAGCTTGAATCGAAAGA...CCTCGGTGATGGAGAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
3UTR CAA 72 bp AATAATTATTTGGAAGGATGCAAAATACAACGCAGTTaGAGAATCACAACAGAAGCTGCTCAACTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: NNYLEGCKIQRS*RITTEAAQLPS
Trigger: AGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTGCGTTGTATTTTGCATCCTTCCAAATAATTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS-3UTR CAA 90 bp CAAAATACAACGCAGTTTGAGAATCACAACAGAAGCTGCTCAACTCCCTTCTCTCGGCCGTGGCTGGCATaGTGGCAGATGGCGCGCCAC +
Preference number: 5 (lower is better)
Translates to: QNTTQFENHNRSCSTPFSRPWLA*WQMARH
Trigger: GTGGCGCGCCATCTGCCACAATGCCAGCCACGGCCG...AGAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTGCGTTGTATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS-3UTR CAA 90 bp ACGCAGTTTGAGAATCACAACAGAAGCTGCTCAACTCCCTTCTCTCCATCACCGTTCATGGGGGAGGGGTaGAAACACCCTCAAGTGCAC +
Preference number: 5 (lower is better)
Translates to: TQFENHNRSCSTPFSPSPFMGEG*KHPQVH
Trigger: GTGCACTTGAGGGTGTTTCAACCCCTCCCCCATGAA...CGGTGATGGAGAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTGCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS-3UTR CAA 90 bp TTTGAGAATCACAACAGAAGCTGCTCAACTCCCTTCTCTCCATCACCGAGGGGGCCACCAACATCAACCTaGATGAAGAGGTTGGTGCCA +
Preference number: 5 (lower is better)
Translates to: FENHNRSCSTPFSPSPRGPPTST*MKRLVP
Trigger: TGGCACCAACCTCTTCATCAAGGTTGATGTTGGTGG...CCCCCTCGGTGATGGAGAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS TCA 90 bp ACTATCTGTCTCTTGAAGGATATGGCTTTAAAGACATCAAACTTCTaGTTTTCTTTCGATTCAAGCTGGGACTTCACCTGGTCGGCGACC +
Preference number: 5 (lower is better)
Translates to: TICLLKDMALKTSNF*FSFDSSWDFTWSAT
Trigger: GGTCGCCGACCAGGTGAAGTCCCAGCTTGAATCGAAAGAAAATCAGAAGTTTGATGTCTTTAAAGCCATATCCTTCAAGAGACAGATAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS-3UTR CAA 90 bp CAAAATACAACGCAGTTTGAGAATCACAACAGAAGCTGCTCAACTCCCTTCTCTGCCACTATCTGTCTCTaGAAGGATATGGCTTTAAAG +
Preference number: 5 (lower is better)
Translates to: QNTTQFENHNRSCSTPFSATICL*KDMALK
Trigger: CTTTAAAGCCATATCCTTCAAGAGACAGATAGTGGC...AGAGAAGGGAGTTGAGCAGCTTCTGTTGTGATTCTCAAACTGCGTTGTATTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS CCA 72 bp ACTTCACCTGGTCGGCGACCTCCTGCGTCTCGGCCGTaGCTGGCATTGTGGCAGATGGCGCGCCACACATCA +
Preference number: 6 (lower is better)
Translates to: TSPGRRPPASRP*LALWQMARHTS
Trigger: TGATGTGTGGCGCGCCATCTGCCACAATGCCAGCCACGGCCGAGACGCAGGAGGTCGCCGACCAGGTGAAGT
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS GCA 72 bp GATTCAAGCTGGGACTTCACCTGGTCGGCGACCTCCTaGGTCTCGGCCGTGGCTGGCATTGTGGCAGATGGC +
Preference number: 6 (lower is better)
Translates to: DSSWDFTWSATS*VSAVAGIVADG
Trigger: GCCATCTGCCACAATGCCAGCCACGGCCGAGACGCAGGAGGTCGCCGACCAGGTGAAGTCCCAGCTTGAATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS CAA 72 bp CTCAAGTGCACGCATTTATCTCCACCAACATCAACCTaGATGAAGAGGTTGGTGCCAGCCACTATCTGTCTC +
Preference number: 6 (lower is better)
Translates to: LKCTHLSPPTST*MKRLVPATICL
Trigger: GAGACAGATAGTGGCTGGCACCAACCTCTTCATCAAGGTTGATGTTGGTGGAGATAAATGCGTGCACTTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8
CDS CAA 90 bp AAGTGCACGCATTTATCTCCACCAACATCAACCTTGATGAAGAGGTaGGTGCCAGCCACTATCTGTCTCTTGAAGGATATGGCTTTAAAG +
Preference number: 6 (lower is better)
Translates to: KCTHLSPPTSTLMKR*VPATICLLKDMALK
Trigger: CTTTAAAGCCATATCCTTCAAGAGACAGATAGTGGCTGGCACCAACCTCTTCATCAAGGTTGATGTTGGTGGAGATAAATGCGTGCACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005185.8