RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CSTAD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047363

Ensembl transcript IDs: ENSMUST00000102853.4

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTGAAGTTCGTTCTGTCCCTCAGTCTTTTCATAGGTTCCTGGGATaGAACTCAGGTTGTTGGCAAATGCTTTTATCTGCTGAGCCATCT +
Preference number: 1 (lower is better)
Translates to: SEVRSVPQSFHRFLG*NSGCWQMLLSAEPS
Trigger: AGATGGCTCAGCAGATAAAAGCATTTGCCAACAACCTGAGTTCCATCCCAGGAACCTATGAAAAGACTGAGGGACAGAACGAACTTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR GCA 90 bp AGTCTTTTCATAGGTTCCTGGGATGGAACTCAGGTTGTTGGCAAATaGTTTTATCTGCTGAGCCATCTTCCTAACCTCTTAGCTCATTTT +
Preference number: 1 (lower is better)
Translates to: SLFIGSWDGTQVVGK*FYLLSHLPNLLAHF
Trigger: AAAATGAGCTAAGAGGTTAGGAAGATGGCTCAGCAGATAAAAGCATTTGCCAACAACCTGAGTTCCATCCCAGGAACCTATGAAAAGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR-3UTR TCA 90 bp TTGATTCAATGTATCCTCTTCACATCCTCGCCAACACTTGTTGTTCTCTTTCTCCTGCCACTGTGTGCATaGGCAGGTCAGAGGACAACT +
Preference number: 2 (lower is better)
Translates to: LIQCILFTSSPTLVVLFLLPLCA*AGQRTT
Trigger: AGTTGTCCTCTGACCTGCTCATGCACACAGTGGCAG...GAGAAAGAGAACAACAAGTGTTGGCGAGGATGTGAAGAGGATACATTGAATCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR-3UTR GCA 90 bp CATACCTGCCACTGTGTGCATGAGCAGGTCAGAGGACAACTTTCTGAAGTTCGTCAGGTTGTTGGCAAATaGTTTTATCTGCTGAGCCAT +
Preference number: 2 (lower is better)
Translates to: HTCHCVHEQVRGQLSEVRQVVGK*FYLLSH
Trigger: ATGGCTCAGCAGATAAAAGCATTTGCCAACAACCTG...ACGAACTTCAGAAAGTTGTCCTCTGACCTGCTCATGCACACAGTGGCAGGTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR-3UTR CCA 90 bp CACTGTGTGCATGAGCAGGTCAGAGGACAACTTTCTGAAGTTCGTTCTGTCCCTCTTTTCATAGGTTCCTaGGATGGAACTCAGGTTGTT +
Preference number: 2 (lower is better)
Translates to: HCVHEQVRGQLSEVRSVPLFIGS*DGTQVV
Trigger: AACAACCTGAGTTCCATCCCAGGAACCTATGAAAAG...AGGGACAGAACGAACTTCAGAAAGTTGTCCTCTGACCTGCTCATGCACACAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR-3UTR CAA 90 bp GTATGTGTGTGTGTAGGGGTGTGTATGCATACCTGCCACTGTGTGCATGAGCAGGTAGTCCAGCTGGTCTaGAACTCTCTCTCTCCATCG +
Preference number: 3 (lower is better)
Translates to: VCVCVGVCMHTCHCVHEQVVQLV*NSLSPS
Trigger: CGATGGAGAGAGAGAGTTCAAGACCAGCTGGACTAC...CTGCTCATGCACACAGTGGCAGGTATGCATACACACCCCTACACACACACATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR TCA 72 bp CATCGGGTCAATGCTTCATCCTGTTGCCATAGTGACTaGACCATTGATTCAATGTATCCTCTTCACATCCTC +
Preference number: 3 (lower is better)
Translates to: HRVNASSCCHSD*TIDSMYPLHIL
Trigger: GAGGATGTGAAGAGGATACATTGAATCAATGGTTCAGTCACTATGGCAACAGGATGAAGCATTGACCCGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR GCA 72 bp ATAGGTTCCTGGGATGGAACTCAGGTTGTTGGCAAATaGTTTTATCTGCTGAGCCATCTTCCTAACCTCTTA +
Preference number: 3 (lower is better)
Translates to: IGSWDGTQVVGK*FYLLSHLPNLL
Trigger: TAAGAGGTTAGGAAGATGGCTCAGCAGATAAAAGCATTTGCCAACAACCTGAGTTCCATCCCAGGAACCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR-3UTR CAA 90 bp TGTATGCATACCTGCCACTGTGTGCATGAGCAGGTCAGAGGACAACTTTCTGAATCATTTTTGTTTGTTTaGAGACAGTTCCCCTGTAGT +
Preference number: 3 (lower is better)
Translates to: CMHTCHCVHEQVRGQLSESFLFV*RQFPCS
Trigger: ACTACAGGGGAACTGTCTCAAAACAAACAAAAATGA...TTCAGAAAGTTGTCCTCTGACCTGCTCATGCACACAGTGGCAGGTATGCATACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR-3UTR CAA 90 bp TCAATGTATCCTCTTCACATCCTCGCCAACACTTGTTGTTCTCTTTCTCTTGACCCTCTTAGCTCATTTTaGTTTGTTTTGAGACAGTTC +
Preference number: 3 (lower is better)
Translates to: SMYPLHILANTCCSLSLDPLSSF*FVLRQF
Trigger: GAACTGTCTCAAAACAAACAAAAATGAGCTAAGAGG...GTCAAGAGAAAGAGAACAACAAGTGTTGGCGAGGATGTGAAGAGGATACATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR TCA 72 bp TTTCTCTTGACTGTGGCCATCTTGACATGTGAGAAGTaGTACCTCCTGGCTGGTTTACATTTTAAAAATTGT +
Preference number: 3 (lower is better)
Translates to: FLLTVAILTCEK*YLLAGLHFKNC
Trigger: ACAATTTTTAAAATGTAAACCAGCCAGGAGGTATCACTTCTCACATGTCAAGATGGCCACAGTCAAGAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR TCA 90 bp TGTATGCATACCTGCCACTGTGTGCATGAGCAGGTCAGAGGACAACTTTCTGAAAACTCCAAGCAAGTCTaGAGCAGAGGAGGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: CMHTCHCVHEQVRGQLSENSKQV*SRGGRP
Trigger: GGGCCTGCCTCCTCTGCTTCAGACTTGCTTGGAGTT...TTCAGAAAGTTGTCCTCTGACCTGCTCATGCACACAGTGGCAGGTATGCATACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR TCA 90 bp CACATCCTCGCCAACACTTGTTGTTCTCTTTCTCTTGACTGTGGCCATCTTGACCCGTTATGGCTCAGCTaGGCTCCGAACTCCAAGCAA +
Preference number: 4 (lower is better)
Translates to: HILANTCCSLSLDCGHLDPLWLS*APNSKQ
Trigger: TTGCTTGGAGTTCGGAGCTCAGCTGAGCCATAACGG...GTCAAGATGGCCACAGTCAAGAGAAAGAGAACAACAAGTGTTGGCGAGGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR TCA 90 bp CATACCTGCCACTGTGTGCATGAGCAGGTCAGAGGACAACTTTCTGAAGTTCGTAGGATCTCTTCCTTGTaGGCCTCCGTTATGGCTCAG +
Preference number: 4 (lower is better)
Translates to: HTCHCVHEQVRGQLSEVRRISSL*ASVMAQ
Trigger: CTGAGCCATAACGGAGGCTCACAAGGAAGAGATCCT...ACGAACTTCAGAAAGTTGTCCTCTGACCTGCTCATGCACACAGTGGCAGGTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR GCA 90 bp CACATCCTCGCCAACACTTGTTGTTCTCTTTCTCTTGACTGTGGCCATCTTGACAGACAGGCACAGGATTaGCTGAGTAGCTGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: HILANTCCSLSLDCGHLDRQAQD*LSSWES
Trigger: GCTCTCCCAGCTACTCAGGCAATCCTGTGCCTGTCT...GTCAAGATGGCCACAGTCAAGAGAAAGAGAACAACAAGTGTTGGCGAGGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR CCA 90 bp TCTGTCCCTCAGTCTTTTCATAGGTTCCTGGGATGGAACTCAGGTTGTTGGCAACCCCAGGCAGATATCTaGCCACACCCCAACTCCTTA +
Preference number: 4 (lower is better)
Translates to: SVPQSFHRFLGWNSGCWQPQADI*PHPNSL
Trigger: TAAGGAGTTGGGGTGTGGCCAGATATCTGCCTGGGG...TTGCCAACAACCTGAGTTCCATCCCAGGAACCTATGAAAAGACTGAGGGACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR TCA 90 bp TCAATGTATCCTCTTCACATCCTCGCCAACACTTGTTGTTCTCTTTCTCTTGACAGGCACAGGATTGCCTaGGTAGCTGGGAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: SMYPLHILANTCCSLSLDRHRIA*VAGRAF
Trigger: GAAGGCTCTCCCAGCTACTCAGGCAATCCTGTGCCT...GTCAAGAGAAAGAGAACAACAAGTGTTGGCGAGGATGTGAAGAGGATACATTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR TCA 90 bp TCTGTCCCTCAGTCTTTTCATAGGTTCCTGGGATGGAACTCAGGTTGTTGGCAAAGTGAAACTATGTGGTaGGCCAGGTCACCCAAGAGA +
Preference number: 4 (lower is better)
Translates to: SVPQSFHRFLGWNSGCWQSETMW*ARSPKR
Trigger: TCTCTTGGGTGACCTGGCTCACCACATAGTTTCACT...TTGCCAACAACCTGAGTTCCATCCCAGGAACCTATGAAAAGACTGAGGGACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR GCA 90 bp CATACCTGCCACTGTGTGCATGAGCAGGTCAGAGGACAACTTTCTGAAGTTCGTAACGTACATCCTCTGTaGTTCACAGGATCTCTTCCT +
Preference number: 4 (lower is better)
Translates to: HTCHCVHEQVRGQLSEVRNVHPL*FTGSLP
Trigger: AGGAAGAGATCCTGTGAAGCACAGAGGATGTACGTT...ACGAACTTCAGAAAGTTGTCCTCTGACCTGCTCATGCACACAGTGGCAGGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR TCA 90 bp CTCAGTCTTTTCATAGGTTCCTGGGATGGAACTCAGGTTGTTGGCAAATGCTTTCATGATGGCTCTCAGTaGAACTATGTGGTGAGCCAG +
Preference number: 4 (lower is better)
Translates to: LSLFIGSWDGTQVVGKCFHDGSQ*NYVVSQ
Trigger: CTGGCTCACCACATAGTTTCACTGAGAGCCATCATG...AAAGCATTTGCCAACAACCTGAGTTCCATCCCAGGAACCTATGAAAAGACTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
3UTR CAA 72 bp TCAATGCTTCATCCTGTTGCCATAGTGACTGAACCATaGATTCAATGTATCCTCTTCACATCCTCGCCAACA +
Preference number: 4 (lower is better)
Translates to: SMLHPVAIVTEP*IQCILFTSSPT
Trigger: TGTTGGCGAGGATGTGAAGAGGATACATTGAATCAATGGTTCAGTCACTATGGCAACAGGATGAAGCATTGA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS GCA 90 bp GGCAGATATCTGGCCACACCCCAACTCCTTAACGTACATCCTCTGTaGTTCACAGGATCTCTTCCTTGTGAGCCTCCGTTATGGCTCAGC +
Preference number: 5 (lower is better)
Translates to: GRYLATPQLLNVHPL*FTGSLPCEPPLWLS
Trigger: GCTGAGCCATAACGGAGGCTCACAAGGAAGAGATCCTGTGAAGCACAGAGGATGTACGTTAAGGAGTTGGGGTGTGGCCAGATATCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS-3UTR CAA 90 bp ATAGGTTCCTGGGATGGAACTCAGGTTGTTGGCAAATGCTTTTATCTGCTGAGCAGGCTGACCTTGAACTaGAAAGGCAGGCCACTGGCT +
Preference number: 5 (lower is better)
Translates to: IGSWDGTQVVGKCFYLLSRLTLN*KGRPLA
Trigger: AGCCAGTGGCCTGCCTTTCAAGTTCAAGGTCAGCCT...GCTCAGCAGATAAAAGCATTTGCCAACAACCTGAGTTCCATCCCAGGAACCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS TCA 72 bp GCTCCTGAAAGCCATGGAGACAGGCACAGGATTGCCTaGGTAGCTGGGAGAGCCTTCCAGTACAGAATTCCC +
Preference number: 6 (lower is better)
Translates to: APESHGDRHRIA*VAGRAFQYRIP
Trigger: GGGAATTCTGTACTGGAAGGCTCTCCCAGCTACTCAGGCAATCCTGTGCCTGTCTCCATGGCTTTCAGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS CCA 72 bp AAGCCATGGAGACAGGCACAGGATTGCCTGAGTAGCTaGGAGAGCCTTCCAGTACAGAATTCCCCAGGCAGA +
Preference number: 6 (lower is better)
Translates to: KPWRQAQDCLSS*ESLPVQNSPGR
Trigger: TCTGCCTGGGGAATTCTGTACTGGAAGGCTCTCCCAGCTACTCAGGCAATCCTGTGCCTGTCTCCATGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS TCA 72 bp AGGCCACTGGCTGTACCAACTCATGATGGCTCTCAGTaGAACTATGTGGTGAGCCAGGTCACCCAAGAGATG +
Preference number: 6 (lower is better)
Translates to: RPLAVPTHDGSQ*NYVVSQVTQEM
Trigger: CATCTCTTGGGTGACCTGGCTCACCACATAGTTTCACTGAGAGCCATCATGAGTTGGTACAGCCAGTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS GCA 72 bp CTGGCCACACCCCAACTCCTTAACGTACATCCTCTGTaGTTCACAGGATCTCTTCCTTGTGAGCCTCCGTTA +
Preference number: 6 (lower is better)
Translates to: LATPQLLNVHPL*FTGSLPCEPPL
Trigger: TAACGGAGGCTCACAAGGAAGAGATCCTGTGAAGCACAGAGGATGTACGTTAAGGAGTTGGGGTGTGGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS TCA 72 bp GAACTTGAAAGGCAGGCCACTGGCTGTACCAACTCATaGTGGCTCTCAGTGAAACTATGTGGTGAGCCAGGT +
Preference number: 6 (lower is better)
Translates to: ELERQATGCTNS*WLSVKLCGEPG
Trigger: ACCTGGCTCACCACATAGTTTCACTGAGAGCCATCATGAGTTGGTACAGCCAGTGGCCTGCCTTTCAAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4
CDS CCA 72 bp AGAGCCTTCCAGTACAGAATTCCCCAGGCAGATATCTaGCCACACCCCAACTCCTTAACGTACATCCTCTGT +
Preference number: 6 (lower is better)
Translates to: RAFQYRIPQADI*PHPNSLTYILC
Trigger: ACAGAGGATGTACGTTAAGGAGTTGGGGTGTGGCCAGATATCTGCCTGGGGAATTCTGTACTGGAAGGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102853.4