Pregenerated sensors for CSTA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095620Ensembl transcript IDs: ENSMUST00000063539.7, ENSMUST00000187183.7, ENSMUST00000187742.7
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GATGGCCAAATCTGTTTACAAGGAGAAGAGTCAGGACACTTTAGAATTTGCTGCGGCAGATCTGGCCCGTaGCAAGCCTCCAGGCATCAT | + |
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Preference number: 4 (lower is better) Translates to: DGQICLQGEESGHFRICCGRSGP*QASRHH Trigger: ATGATGCCTGGAGGCTTGTCACGGGCCAGATCTGCC...GCAGCAAATTCTAAAGTGTCCTGACTCTTCTCCTTGTAAACAGATTTGGCCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187183.7 ENSMUST00000187742.7 |
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| CDS-3UTR TCA 90 bp | TTTATTGATGGCCAAATCTGTTTACAAGGAGAAGAGTCAGGACACTTTAGAATTGGCAGATCTGGCCCGTaGCAAGCCTCCAGGCATCAT | + |
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Preference number: 4 (lower is better) Translates to: FIDGQICLQGEESGHFRIGRSGP*QASRHH Trigger: ATGATGCCTGGAGGCTTGTCACGGGCCAGATCTGCC...AATTCTAAAGTGTCCTGACTCTTCTCCTTGTAAACAGATTTGGCCATCAATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187183.7 |
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| CDS-3UTR TCA 90 bp | GATGGCCAAATCTGTTTACAAGGAGAAGAGTCAGGACACTTTAGAATTTGCTGCCTCCAGAAATCCCTGTaGAGACTTTTATGTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: DGQICLQGEESGHFRICCLQKSL*RLLCGG Trigger: TCCTCCACATAAAAGTCTTCACAGGGATTTCTGGAG...GCAGCAAATTCTAAAGTGTCCTGACTCTTCTCCTTGTAAACAGATTTGGCCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187183.7 ENSMUST00000187742.7 |
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| CDS-3UTR CCA 90 bp | GATGGCCAAATCTGTTTACAAGGAGAAGAGTCAGGACACTTTAGAATTTGCTGCGTGAAGACTTTTATGTaGAGGAAACAACCACCACCA | + |
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Preference number: 4 (lower is better) Translates to: DGQICLQGEESGHFRICCVKTFM*RKQPPP Trigger: TGGTGGTGGTTGTTTCCTCCACATAAAAGTCTTCAC...GCAGCAAATTCTAAAGTGTCCTGACTCTTCTCCTTGTAAACAGATTTGGCCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187183.7 ENSMUST00000187742.7 |
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| CDS-3UTR TCA 90 bp | ATTGATTCTTTATTGATGGCCAAATCTGTTTACAAGGAGAAGAGTCAGGACACTCTCCAGAAATCCCTGTaGAGACTTTTATGTGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: IDSLLMAKSVYKEKSQDTLQKSL*RLLCGG Trigger: TCCTCCACATAAAAGTCTTCACAGGGATTTCTGGAG...AGTGTCCTGACTCTTCTCCTTGTAAACAGATTTGGCCATCAATAAAGAATCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000187183.7 |
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| CDS-3UTR CCA 90 bp | TTCTTTATTGATGGCCAAATCTGTTTACAAGGAGAAGAGTCAGGACACTTTAGAGTGAAGACTTTTATGTaGAGGAAACAACCACCACCA | + |
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Preference number: 4 (lower is better) Translates to: FFIDGQICLQGEESGHFRVKTFM*RKQPPP Trigger: TGGTGGTGGTTGTTTCCTCCACATAAAAGTCTTCAC...TCTAAAGTGTCCTGACTCTTCTCCTTGTAAACAGATTTGGCCATCAATAAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000187183.7 |
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| CDS CCA 90 bp | TTGGTTTTCTCTTCAAGCAGTGACTTGACCTTATTAGCAATCTCCTaGATTTCTGGTGTGGCAGATCTGGCCCGTGACAAGCCTCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: LVFSSSSDLTLLAIS*ISGVADLARDKPPG Trigger: GCCTGGAGGCTTGTCACGGGCCAGATCTGCCACACCAGAAATCCAGGAGATTGCTAATAAGGTCAAGTCACTGCTTGAAGAGAAAACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063539.7 ENSMUST00000187183.7 ENSMUST00000187742.7 |
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| CDS TCA 90 bp | AGTAATTTTGTCCAGCGACGACTTGAGATTTATACTCAACAGCTTTaGACACTTCATATTTCTCATTGGTTTTCTCTTCAAGCAGTGACT | + |
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Preference number: 5 (lower is better) Translates to: SNFVQRRLEIYTQQL*TLHISHWFSLQAVT Trigger: AGTCACTGCTTGAAGAGAAAACCAATGAGAAATATGAAGTGTTCAAAGCTGTTGAGTATAAATCTCAAGTCGTCGCTGGACAAAATTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063539.7 ENSMUST00000187183.7 ENSMUST00000187742.7 |
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| CDS TCA 72 bp | GTCCAGCGACGACTTGAGATTTATACTCAACAGCTTTaGACACTTCATATTTCTCATTGGTTTTCTCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: VQRRLEIYTQQL*TLHISHWFSLQ Trigger: TTGAAGAGAAAACCAATGAGAAATATGAAGTGTTCAAAGCTGTTGAGTATAAATCTCAAGTCGTCGCTGGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063539.7 ENSMUST00000187183.7 ENSMUST00000187742.7 |
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| CDS CAA 90 bp | ACCACCAACATCCATCTTAATGAAGTAATTTTGTCCAGCGACGACTaGAGATTTATACTCAACAGCTTTGAACACTTCATATTTCTCATT | + |
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Preference number: 6 (lower is better) Translates to: TTNIHLNEVILSSDD*RFILNSFEHFIFLI Trigger: AATGAGAAATATGAAGTGTTCAAAGCTGTTGAGTATAAATCTCAAGTCGTCGCTGGACAAAATTACTTCATTAAGATGGATGTTGGTGGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063539.7 ENSMUST00000187183.7 ENSMUST00000187742.7 |
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| CDS CAA 72 bp | ATCCATCTTAATGAAGTAATTTTGTCCAGCGACGACTaGAGATTTATACTCAACAGCTTTGAACACTTCATA | + |
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Preference number: 6 (lower is better) Translates to: IHLNEVILSSDD*RFILNSFEHFI Trigger: TATGAAGTGTTCAAAGCTGTTGAGTATAAATCTCAAGTCGTCGCTGGACAAAATTACTTCATTAAGATGGAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063539.7 ENSMUST00000187183.7 ENSMUST00000187742.7 |
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