Pregenerated sensors for CSTA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034362Ensembl transcript IDs: ENSMUST00000096090.3, ENSMUST00000161638.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGCTAGAGACCACGAGGAAGGAACAGGAGGAGAGAGAGATGTCATaGGCTAGAGGCCAAGAGAACATGGCCCATAGGGCTGTCTTATGG | + |
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Preference number: 1 (lower is better) Translates to: RLETTRKEQEEREMS*ARGQENMAHRAVLW Trigger: CCATAAGACAGCCCTATGGGCCATGTTCTCTTGGCCTCTAGCCCATGACATCTCTCTCTCCTCCTGTTCCTTCCTCGTGGTCTCTAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 90 bp | GGCAACCGAAGGGACCAAGGAGTGAGCTTCCCTGACAACCACCAGTaGACCTGCAGTGAGGAAGGGATGATAAGATCCTTTATGCAGTTG | + |
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Preference number: 1 (lower is better) Translates to: GNRRDQGVSFPDNHQ*TCSEEGMIRSFMQL Trigger: CAACTGCATAAAGGATCTTATCATCCCTTCCTCACTGCAGGTGCACTGGTGGTTGTCAGGGAAGCTCACTCCTTGGTCCCTTCGGTTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 90 bp | CGAAGGGACCAAGGAGTGAGCTTCCCTGACAACCACCAGTGCACCTaGAGTGAGGAAGGGATGATAAGATCCTTTATGCAGTTGCAACTG | + |
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Preference number: 1 (lower is better) Translates to: RRDQGVSFPDNHQCT*SEEGMIRSFMQLQL Trigger: CAGTTGCAACTGCATAAAGGATCTTATCATCCCTTCCTCACTGCAGGTGCACTGGTGGTTGTCAGGGAAGCTCACTCCTTGGTCCCTTCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 90 bp | GGCACCTGGAGACTAGATGTCAGTGCGTCATCAATGTACATTTCCTaGTCTCGATTGTTGGTTTTTGGCTGTGCAGGAGAAGGGTCTCGT | + |
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Preference number: 1 (lower is better) Translates to: GTWRLDVSASSMYIS*SRLLVFGCAGEGSR Trigger: ACGAGACCCTTCTCCTGCACAGCCAAAAACCAACAATCGAGACCAGGAAATGTACATTGATGACGCACTGACATCTAGTCTCCAGGTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 90 bp | TGGCTGTGCAGGAGAAGGGTCTCGTGGGAAGCTCACACAAATATTTaGACTACTGAGTACCAGAAAGCCTTTGTTGGTGATGGAAAATCA | + |
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Preference number: 1 (lower is better) Translates to: WLCRRRVSWEAHTNI*TTEYQKAFVGDGKS Trigger: TGATTTTCCATCACCAACAAAGGCTTTCTGGTACTCAGTAGTGCAAATATTTGTGTGAGCTTCCCACGAGACCCTTCTCCTGCACAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 90 bp | CAAAAATTACATTATTATAACAATTTGAGAGGCTTGAGTGGCACCTaGAGACTAGATGTCAGTGCGTCATCAATGTACATTTCCTGGTCT | + |
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Preference number: 1 (lower is better) Translates to: QKLHYYNNLRGLSGT*RLDVSASSMYISWS Trigger: AGACCAGGAAATGTACATTGATGACGCACTGACATCTAGTCTCCAGGTGCCACTCAAGCCTCTCAAATTGTTATAATAATGTAATTTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR TCA 90 bp | TGGAAAATCACTGCAACTGACTCTCAAGTGCAGTGGAAGCATGGGGGAAAGGGAGAAGGGACCAAGGAGTaGGCTTCCCTGACAACCACC | + |
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Preference number: 2 (lower is better) Translates to: WKITATDSQVQWKHGGKGEGTKE*ASLTTT Trigger: GGTGGTTGTCAGGGAAGCTCACTCCTTGGTCCCTTC...TCCCTTTCCCCCATGCTTCCACTGCACTTGAGAGTCAGTTGCAGTGATTTTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CCA 90 bp | CATCGGTGGGGTTTAGGTTTCCCCAGGCTAGAGACCACGAGGAAGGAACAGGAGTTTGAGAGGCTTGAGTaGCACCTGGAGACTAGATGT | + |
|
Preference number: 2 (lower is better) Translates to: HRWGLGFPRLETTRKEQEFERLE*HLETRC Trigger: ACATCTAGTCTCCAGGTGCCACTCAAGCCTCTCAAA...CTCCTGTTCCTTCCTCGTGGTCTCTAGCCTGGGGAAACCTAAACCCCACCGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR TCA 90 bp | CATCGGTGGGGTTTAGGTTTCCCCAGGCTAGAGACCACGAGGAAGGAACAGGAGGAAAGCCTTTGTTGGTaGTGGAAAATCACTGCAACT | + |
|
Preference number: 2 (lower is better) Translates to: HRWGLGFPRLETTRKEQEESLCW*WKITAT Trigger: AGTTGCAGTGATTTTCCATCACCAACAAAGGCTTTC...CTCCTGTTCCTTCCTCGTGGTCTCTAGCCTGGGGAAACCTAAACCCCACCGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CCA 90 bp | CATAGGATGTGTGTTTCATTTGAAAACCTAACTCGTGGGAAGAAAGACCATGCTAGTGCAGTGGAAGCATaGGGGAAAGGGAGAGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: HRMCVSFENLTRGKKDHASAVEA*GKGRGQ Trigger: CTGCCCTCTCCCTTTCCCCCATGCTTCCACTGCACT...AGCATGGTCTTTCTTCCCACGAGTTAGGTTTTCAAATGAAACACACATCCTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR GCA 90 bp | CATAGGATGTGTGTTTCATTTGAAAACCTAACTCGTGGGAAGAAAGACCATGCTAAGGCAGAGTTGACATaGTGGGTTCTGGGCAACCGA | + |
|
Preference number: 2 (lower is better) Translates to: HRMCVSFENLTRGKKDHAKAELT*WVLGNR Trigger: TCGGTTGCCCAGAACCCAGCATGTCAACTCTGCCTT...AGCATGGTCTTTCTTCCCACGAGTTAGGTTTTCAAATGAAACACACATCCTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CCA 90 bp | TGGAAAATCACTGCAACTGACTCTCAAGTGCAGTGGAAGCATGGGGGAAAGGGATGGAATCACTTATTGTaGAGCTTCTACTCTGAACCA | + |
|
Preference number: 2 (lower is better) Translates to: WKITATDSQVQWKHGGKGWNHLL*SFYSEP Trigger: TGGTTCAGAGTAGAAGCTCCACAATAAGTGATTCCA...TCCCTTTCCCCCATGCTTCCACTGCACTTGAGAGTCAGTTGCAGTGATTTTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR TCA 90 bp | TTAAGAATACAAGGCTTAGACCCAGTCCTTTTTAACAGCTGCTATTACAAAATGTCTGGGCCAGAAGGCTaGACACAGATGCTCCAACTT | + |
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Preference number: 2 (lower is better) Translates to: LRIQGLDPVLFNSCYYKMSGPEG*TQMLQL Trigger: AAGTTGGAGCATCTGTGTTCAGCCTTCTGGCCCAGA...CATTTTGTAATAGCAGCTGTTAAAAAGGACTGGGTCTAAGCCTTGTATTCTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR TCA 90 bp | CCTACATATTCAAGCAATATTTACTTCCTTCTCAAATCTCTGACAGGGAAGAATGTGGAGCTTCTACTCTaGACCATGAACACTATGCCC | + |
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Preference number: 2 (lower is better) Translates to: PTYSSNIYFLLKSLTGKNVELLL*TMNTMP Trigger: GGGCATAGTGTTCATGGTTCAGAGTAGAAGCTCCAC...ATTCTTCCCTGTCAGAGATTTGAGAAGGAAGTAAATATTGCTTGAATATGTAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR GCA 90 bp | CCTACATATTCAAGCAATATTTACTTCCTTCTCAAATCTCTGACAGGGAAGAATAACCACCAGTGCACCTaGAGTGAGGAAGGGATGATA | + |
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Preference number: 2 (lower is better) Translates to: PTYSSNIYFLLKSLTGKNNHQCT*SEEGMI Trigger: TATCATCCCTTCCTCACTGCAGGTGCACTGGTGGTT...ATTCTTCCCTGTCAGAGATTTGAGAAGGAAGTAAATATTGCTTGAATATGTAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR TCA 90 bp | CCTACATATTCAAGCAATATTTACTTCCTTCTCAAATCTCTGACAGGGAAGAATAGGTTGACACAATACTaGGAAACAAGGGAAGTAAAC | + |
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Preference number: 2 (lower is better) Translates to: PTYSSNIYFLLKSLTGKNRLTQY*ETREVN Trigger: GTTTACTTCCCTTGTTTCTCAGTATTGTGTCAACCT...ATTCTTCCCTGTCAGAGATTTGAGAAGGAAGTAAATATTGCTTGAATATGTAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CAA 90 bp | TTGGCAGCATGTATATTAAAAATTGGAATGATACAGAGATTACCCTaGCCCAAGGAGGGTACAAATTCAAGAAACAATCCGTGTTTAAAA | + |
|
Preference number: 2 (lower is better) Translates to: LAACILKIGMIQRLP*PKEGTNSRNNPCLK Trigger: TTTTAAACACGGATTGTTTCTTGAATTTGTACCCTCCTTGGGCAAGGGTAATCTCTGTATCATTCCAATTTTTAATATACATGCTGCCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR TCA 90 bp | GTTTCATTTGAAAACCTAACTCGTGGGAAGAAAGACCATGCTGTGATTTTAAAAAAATATTTGCACTACTaGGTACCAGAAAGCCTTTGT | + |
|
Preference number: 2 (lower is better) Translates to: VSFENLTRGKKDHAVILKKYLHY*VPESLC Trigger: ACAAAGGCTTTCTGGTACTCAGTAGTGCAAATATTT...TTTTAAAATCACAGCATGGTCTTTCTTCCCACGAGTTAGGTTTTCAAATGAAAC 36% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGCTGTGTCTTTGTGCTTCCTACATATTCAAGCAATATTTACTTCCTTCTTATAAGGTTTCTAGATaGAATCACTTATTGTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: WKLCLCASYIFKQYLLPSYKVSR*NHLLWS Trigger: GCTCCACAATAAGTGATTCCATCTAGAAACCTTATA...AGAAGGAAGTAAATATTGCTTGAATATGTAGGAAGCACAAAGACACAGCTTCCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CCA 90 bp | TTAAGAATACAAGGCTTAGACCCAGTCCTTTTTAACAGCTGCTATTACAAAATGCAGTTGTTTAAGTTTTaGAAGCTGTGTCTTTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: LRIQGLDPVLFNSCYYKMQLFKF*KLCLCA Trigger: AGCACAAAGACACAGCTTCCAAAACTTAAACAACTG...CATTTTGTAATAGCAGCTGTTAAAAAGGACTGGGTCTAAGCCTTGTATTCTTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 72 bp | TGCCAGCAGCCAATAGTTGTGGAGAAGAGACATCGGTaGGGTTTAGGTTTCCCCAGGCTAGAGACCACGAGG | + |
|
Preference number: 3 (lower is better) Translates to: CQQPIVVEKRHR*GLGFPRLETTR Trigger: CCTCGTGGTCTCTAGCCTGGGGAAACCTAAACCCCACCGATGTCTCTTCTCCACAACTATTGGCTGCTGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 72 bp | CAAGGAGTGAGCTTCCCTGACAACCACCAGTGCACCTaGAGTGAGGAAGGGATGATAAGATCCTTTATGCAG | + |
|
Preference number: 3 (lower is better) Translates to: QGVSFPDNHQCT*SEEGMIRSFMQ Trigger: CTGCATAAAGGATCTTATCATCCCTTCCTCACTGCAGGTGCACTGGTGGTTGTCAGGGAAGCTCACTCCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 72 bp | GTGCGTCATCAATGTACATTTCCTGGTCTCGATTGTTaGTTTTTGGCTGTGCAGGAGAAGGGTCTCGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: VRHQCTFPGLDC*FLAVQEKGLVG Trigger: TCCCACGAGACCCTTCTCCTGCACAGCCAAAAACCAACAATCGAGACCAGGAAATGTACATTGATGACGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CAA 90 bp | GTCTCGATTGTTGGTTTTTGGCTGTGCAGGAGAAGGGTCTCGTGGGAAGCTCACAGTACCAGAAAGCCTTaGTTGGTGATGGAAAATCAC | + |
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Preference number: 3 (lower is better) Translates to: VSIVGFWLCRRRVSWEAHSTRKP*LVMENH Trigger: GTGATTTTCCATCACCAACAAAGGCTTTCTGGTACT...GTGAGCTTCCCACGAGACCCTTCTCCTGCACAGCCAAAAACCAACAATCGAGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 72 bp | GAGAGGCTTGAGTGGCACCTGGAGACTAGATGTCAGTaGGTCATCAATGTACATTTCCTGGTCTCGATTGTT | + |
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Preference number: 3 (lower is better) Translates to: ERLEWHLETRCQ*VINVHFLVSIV Trigger: AACAATCGAGACCAGGAAATGTACATTGATGACGCACTGACATCTAGTCTCCAGGTGCCACTCAAGCCTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 72 bp | ATCAATGTACATTTCCTGGTCTCGATTGTTGGTTTTTaGCTGTGCAGGAGAAGGGTCTCGTGGGAAGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: INVHFLVSIVGF*LCRRRVSWEAH Trigger: GTGAGCTTCCCACGAGACCCTTCTCCTGCACAGCCAAAAACCAACAATCGAGACCAGGAAATGTACATTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 72 bp | GAAATATTGGGGGTTGTCCGGGCAGTCAGCTGTCTCTaGCAGTTGTTTAAGTTTTGGAAGCTGTGTCTTTGT | + |
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Preference number: 3 (lower is better) Translates to: EILGVVRAVSCL*QLFKFWKLCLC Trigger: ACAAAGACACAGCTTCCAAAACTTAAACAACTGGCAGAGACAGCTGACTGCCCGGACAACCCCCAATATTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 72 bp | CTCTCAGATTCTCTGGGCCAGAAGGCTGAACACAGATaGTCCAACTTTATAAGAAATATTGGGGGTTGTCCG | + |
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Preference number: 3 (lower is better) Translates to: LSDSLGQKAEHR*SNFIRNIGGCP Trigger: CGGACAACCCCCAATATTTCTTATAAAGTTGGAGCATCTGTGTTCAGCCTTCTGGCCCAGAGAATCTGAGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR GCA 72 bp | AGGAGAAGGGTCTCGTGGGAAGCTCACACAAATATTTaGACTACTGAGTACCAGAAAGCCTTTGTTGGTGAT | + |
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Preference number: 3 (lower is better) Translates to: RRRVSWEAHTNI*TTEYQKAFVGD Trigger: ATCACCAACAAAGGCTTTCTGGTACTCAGTAGTGCAAATATTTGTGTGAGCTTCCCACGAGACCCTTCTCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 72 bp | ATTGTTGGTTTTTGGCTGTGCAGGAGAAGGGTCTCGTaGGAAGCTCACACAAATATTTGCACTACTGAGTAC | + |
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Preference number: 3 (lower is better) Translates to: IVGFWLCRRRVS*EAHTNICTTEY Trigger: GTACTCAGTAGTGCAAATATTTGTGTGAGCTTCCCACGAGACCCTTCTCCTGCACAGCCAAAAACCAACAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR TCA 72 bp | GAACATCACTACCTACATATGGGGTTGCCTCAAATGTaGCAAGCTAGCCATTGGACAAGAAATGCCCCAATT | + |
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Preference number: 3 (lower is better) Translates to: EHHYLHMGLPQM*QASHWTRNAPI Trigger: AATTGGGGCATTTCTTGTCCAATGGCTAGCTTGTCACATTTGAGGCAACCCCATATGTAGGTAGTGATGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 72 bp | AGACTAGATGTCAGTGCGTCATCAATGTACATTTCCTaGTCTCGATTGTTGGTTTTTGGCTGTGCAGGAGAA | + |
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Preference number: 3 (lower is better) Translates to: RLDVSASSMYIS*SRLLVFGCAGE Trigger: TTCTCCTGCACAGCCAAAAACCAACAATCGAGACCAGGAAATGTACATTGATGACGCACTGACATCTAGTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 72 bp | ATAATTTCCACTTCACTTAAGGTCTCTCAGATTCTCTaGGCCAGAAGGCTGAACACAGATGCTCCAACTTTA | + |
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Preference number: 3 (lower is better) Translates to: IISTSLKVSQIL*ARRLNTDAPTL Trigger: TAAAGTTGGAGCATCTGTGTTCAGCCTTCTGGCCCAGAGAATCTGAGAGACCTTAAGTGAAGTGGAAATTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CAA 90 bp | TGGAAGCTGTGTCTTTGTGCTTCCTACATATTCAAGCAATATTTACTTCCTTCTAATATGAAGGCAGAGTaGACATGCTGGGTTCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: WKLCLCASYIFKQYLLPSNMKAE*TCWVLG Trigger: GCCCAGAACCCAGCATGTCAACTCTGCCTTCATATT...AGAAGGAAGTAAATATTGCTTGAATATGTAGGAAGCACAAAGACACAGCTTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR-3UTR CAA 90 bp | TTAAGAATACAAGGCTTAGACCCAGTCCTTTTTAACAGCTGCTATTACAAAATGCTCGATTGTTGGTTTTaGGCTGTGCAGGAGAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: LRIQGLDPVLFNSCYYKMLDCWF*AVQEKG Trigger: ACCCTTCTCCTGCACAGCCAAAAACCAACAATCGAG...CATTTTGTAATAGCAGCTGTTAAAAAGGACTGGGTCTAAGCCTTGTATTCTTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CCA 72 bp | TTGCAACTGAGCCGTAGTCTTTATAAGGTTTCTAGATaGAATCACTTATTGTGGAGCTTCTACTCTGAACCA | + |
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Preference number: 3 (lower is better) Translates to: LQLSRSLYKVSR*NHLLWSFYSEP Trigger: TGGTTCAGAGTAGAAGCTCCACAATAAGTGATTCCATCTAGAAACCTTATAAAGACTACGGCTCAGTTGCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS-3UTR CCA 90 bp | CATAGGATGTGTGTTTCATTTGAAAACCTAACTCGTGGGAAGAAAGACCATGCTCTGCTGTGGCAGGTCTaGCCTCCGTCAAGCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: HRMCVSFENLTRGKKDHALLWQV*PPSSLR Trigger: CCGGAGGCTTGACGGAGGCCAGACCTGCCACAGCAG...AGCATGGTCTTTCTTCCCACGAGTTAGGTTTTCAAATGAAACACACATCCTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CAA 72 bp | AGTGCGTCATCAATGTACATTTCCTGGTCTCGATTGTaGGTTTTTGGCTGTGCAGGAGAAGGGTCTCGTGGG | + |
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Preference number: 4 (lower is better) Translates to: SASSMYISWSRL*VFGCAGEGSRG Trigger: CCCACGAGACCCTTCTCCTGCACAGCCAAAAACCAACAATCGAGACCAGGAAATGTACATTGATGACGCACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CAA 72 bp | GTCAGTGCGTCATCAATGTACATTTCCTGGTCTCGATaGTTGGTTTTTGGCTGTGCAGGAGAAGGGTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: VSASSMYISWSR*LVFGCAGEGSR Trigger: ACGAGACCCTTCTCCTGCACAGCCAAAAACCAACAATCGAGACCAGGAAATGTACATTGATGACGCACTGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS-3UTR CCA 90 bp | TGGAAAATCACTGCAACTGACTCTCAAGTGCAGTGGAAGCATGGGGGAAAGGGATTTCATATTTCTCATTaGTTTCCTCTTCGAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: WKITATDSQVQWKHGGKGFHISH*FPLRAV Trigger: CACAGCTCGAAGAGGAAACCAATGAGAAATATGAAA...TCCCTTTCCCCCATGCTTCCACTGCACTTGAGAGTCAGTTGCAGTGATTTTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CAA 72 bp | TGCAGTGAGGAAGGGATGATAAGATCCTTTATGCAGTaGCAACTGAGCCGTAGTCTTTATAAGGTTTCTAGA | + |
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Preference number: 4 (lower is better) Translates to: CSEEGMIRSFMQ*QLSRSLYKVSR Trigger: TCTAGAAACCTTATAAAGACTACGGCTCAGTTGCAACTGCATAAAGGATCTTATCATCCCTTCCTCACTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS-3UTR CCA 90 bp | CATAGGATGTGTGTTTCATTTGAAAACCTAACTCGTGGGAAGAAAGACCATGCTTTGAAGACTTTTATGTaGGTGAAACAACCACCCCCT | + |
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Preference number: 4 (lower is better) Translates to: HRMCVSFENLTRGKKDHALKTFM*VKQPPP Trigger: AGGGGGTGGTTGTTTCACCCACATAAAAGTCTTCAA...AGCATGGTCTTTCTTCCCACGAGTTAGGTTTTCAAATGAAACACACATCCTATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| 3UTR CAA 72 bp | TGTATATTAAAAATTGGAATGATACAGAGATTACCCTaGCCCAAGGAGGGTACAAATTCAAGAAACAATCCG | + |
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Preference number: 4 (lower is better) Translates to: CILKIGMIQRLP*PKEGTNSRNNP Trigger: CGGATTGTTTCTTGAATTTGTACCCTCCTTGGGCAAGGGTAATCTCTGTATCATTCCAATTTTTAATATACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS-3UTR CAA 90 bp | TATGAAGGCAGAGTTGACATGCTGGGTTCTGGGCAACCGAAGGGACCAAGGAGTGACTCCAGCGACAACTaGAGTTTTATACTCAACGGC | + |
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Preference number: 5 (lower is better) Translates to: YEGRVDMLGSGQPKGPRSDSSDN*SFILNG Trigger: GCCGTTGAGTATAAAACTCAAGTTGTCGCTGGAGTC...ACTCCTTGGTCCCTTCGGTTGCCCAGAACCCAGCATGTCAACTCTGCCTTCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS CCA 90 bp | AGTTCCAAATTATTCTTTCCAGAAAGATCCTTGAAGACTTTTATGTaGGTGAAACAACCACCCCCTACATCCATCCGGTCAGCAATCTCC | + |
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Preference number: 5 (lower is better) Translates to: SSKLFFPERSLKTFM*VKQPPPTSIRSAIS Trigger: GGAGATTGCTGACCGGATGGATGTAGGGGGTGGTTGTTTCACCCACATAAAAGTCTTCAAGGATCTTTCTGGAAAGAATAATTTGGAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161638.2 |
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| CDS-3UTR CAA 90 bp | TTAAGAATACAAGGCTTAGACCCAGTCCTTTTTAACAGCTGCTATTACAAAATGTTTCCAGAAAGATCCTaGAAGACTTTTATGTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: LRIQGLDPVLFNSCYYKMFPERS*KTFMWV Trigger: CACCCACATAAAAGTCTTCAAGGATCTTTCTGGAAA...CATTTTGTAATAGCAGCTGTTAAAAAGGACTGGGTCTAAGCCTTGTATTCTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS-3UTR CAA 90 bp | TTAAGAATACAAGGCTTAGACCCAGTCCTTTTTAACAGCTGCTATTACAAAATGATTTCATATTTCTCATaGGTTTCCTCTTCGAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: LRIQGLDPVLFNSCYYKMISYFS*VSSSSC Trigger: ACAGCTCGAAGAGGAAACCAATGAGAAATATGAAAT...CATTTTGTAATAGCAGCTGTTAAAAAGGACTGGGTCTAAGCCTTGTATTCTTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS GCA 72 bp | CTGTGCTTTGACCCGGTCAGCAATCTCCTGGACTTCTaGTGTGGCAGGTCTGGCCTCCGTCAAGCCTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: LCFDPVSNLLDF*CGRSGLRQASG Trigger: CCCGGAGGCTTGACGGAGGCCAGACCTGCCACAGCAGAAGTCCAGGAGATTGCTGACCGGGTCAAAGCACAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS GCA 72 bp | CCCTACATCCATCCGGTCAGCAATCTCCTGGACTTCTaGTGTGGCAGGTCTGGCCTCCGTCAAGCCTCCGGG | + |
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Preference number: 6 (lower is better) Translates to: PYIHPVSNLLDF*CGRSGLRQASG Trigger: CCCGGAGGCTTGACGGAGGCCAGACCTGCCACAGCAGAAGTCCAGGAGATTGCTGACCGGATGGATGTAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161638.2 |
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| CDS CCA 72 bp | CATCCATCCGGTCAGCAATCTCCTGGACTTCTGCTGTaGCAGGTCTGGCCTCCGTCAAGCCTCCGGGTATCA | + |
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Preference number: 6 (lower is better) Translates to: HPSGQQSPGLLL*QVWPPSSLRVS Trigger: TGATACCCGGAGGCTTGACGGAGGCCAGACCTGCCACAGCAGAAGTCCAGGAGATTGCTGACCGGATGGATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161638.2 |
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| CDS CCA 72 bp | TCTTCGAGCTGTGCTTTGACCCGGTCAGCAATCTCCTaGACTTCTGCTGTGGCAGGTCTGGCCTCCGTCAAG | + |
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Preference number: 6 (lower is better) Translates to: SSSCALTRSAIS*TSAVAGLASVK Trigger: CTTGACGGAGGCCAGACCTGCCACAGCAGAAGTCCAGGAGATTGCTGACCGGGTCAAAGCACAGCTCGAAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS GCA 72 bp | TATTTCATATTTCTCATTGGTTTCCTCTTCGAGCTGTaGTTTGACCCGGTCAGCAATCTCCTGGACTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: YFIFLIGFLFEL*FDPVSNLLDFC Trigger: GCAGAAGTCCAGGAGATTGCTGACCGGGTCAAAGCACAGCTCGAAGAGGAAACCAATGAGAAATATGAAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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| CDS CAA 90 bp | ACCCCCTACATCCATCTTAATGAAGTAATTGACTCCAGCGACAACTaGAGTTTTATACTCAACGGCTTTGAATATTTCATATTTCTCATT | + |
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Preference number: 6 (lower is better) Translates to: TPYIHLNEVIDSSDN*SFILNGFEYFIFLI Trigger: AATGAGAAATATGAAATATTCAAAGCCGTTGAGTATAAAACTCAAGTTGTCGCTGGAGTCAATTACTTCATTAAGATGGATGTAGGGGGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096090.3 |
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