Pregenerated sensors for CST9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027445Ensembl transcript IDs: ENSMUST00000028935.4
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GAGCTATTCTACATGATGAAACAACAGCAATGTACACTTTCCCCTCATTATTATGCAAAACAAGGAAAATaGGCACAGAGGTTCTGCCAA | + |
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Preference number: 2 (lower is better) Translates to: ELFYMMKQQQCTLSPHYYAKQGK*AQRFCQ Trigger: TTGGCAGAACCTCTGTGCTCATTTTCCTTGTTTTGC...ATAATAATGAGGGGAAAGTGTACATTGCTGTTGTTTCATCATGTAGAATAGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| 3UTR GCA 72 bp | ATTATCCACATATCCAGTCTTGATACTGCACAATGCTaGAAAACAAGGAAAATGAGCACAGAGGTTCTGCCA | + |
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Preference number: 3 (lower is better) Translates to: IIHISSLDTAQC*KTRKMSTEVLP Trigger: TGGCAGAACCTCTGTGCTCATTTTCCTTGTTTTGCAGCATTGTGCAGTATCAAGACTGGATATGTGGATAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR TCA 90 bp | TTCACGGATGCAGAGAAGTACGTGACCAGTCCATGGGTGACTCCCATCAGAGAAGGAGTGATGAGAACATaGAAACTCAGCAGAAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FTDAEKYVTSPWVTPIREGVMRT*KLSRSS Trigger: GCTGCTTCTGCTGAGTTTTCATGTTCTCATCACTCC...TTCTCTGATGGGAGTCACCCATGGACTGGTCACGTACTTCTCTGCATCCGTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR TCA 90 bp | GAGCTATTCTACATGATGAAACAACAGCAATGTACACTTTCCCCTCATTATTATGAAGCAGCAGCATGGTaGGAGGCAGAGCTTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: ELFYMMKQQQCTLSPHYYEAAAW*EAELSF Trigger: GAAAGAAAGCTCTGCCTCTCACCATGCTGCTGCTTC...ATAATAATGAGGGGAAAGTGTACATTGCTGTTGTTTCATCATGTAGAATAGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR TCA 90 bp | ATTATTATCCACATATCCAGTCTTGATACTGCACAATGCTGCAAAACAAGGAAAAGACCATGGCTCTCCTaGAAGGGGCAAATATCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: IIIHISSLDTAQCCKTRKRPWLS*KGQISR Trigger: TCTCGATATTTGCCCCTTTCAGGAGAGCCATGGTCT...TTTCCTTGTTTTGCAGCATTGTGCAGTATCAAGACTGGATATGTGGATAATAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR TCA 90 bp | ATCCACATATCCAGTCTTGATACTGCACAATGCTGCAAAACAAGGAAAATGAGCATTCCACTGTGGGAATaGAATGAACAGATCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: IHISSLDTAQCCKTRKMSIPLWE*NEQICL Trigger: CAAACAGATCTGTTCATTTCATTCCCACAGTGGAAT...GCTCATTTTCCTTGTTTTGCAGCATTGTGCAGTATCAAGACTGGATATGTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR GCA 90 bp | ATCCACATATCCAGTCTTGATACTGCACAATGCTGCAAAACAAGGAAAATGAGCTCTCCTCAAATTTCTTaGATATGGTTCTACGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: IHISSLDTAQCCKTRKMSSPQIS*IWFYAA Trigger: AGCTGCGTAGAACCATATGCAAGAAATTTGAGGAGA...GCTCATTTTCCTTGTTTTGCAGCATTGTGCAGTATCAAGACTGGATATGTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR TCA 90 bp | GAGCTATTCTACATGATGAAACAACAGCAATGTACACTTTCCCCTCATTATTATACTGTGGGAATGAAATaGACAGATCTGTTTGTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: ELFYMMKQQQCTLSPHYYTVGMK*TDLFVS Trigger: AGAAACAAACAGATCTGTTCATTTCATTCCCACAGT...ATAATAATGAGGGGAAAGTGTACATTGCTGTTGTTTCATCATGTAGAATAGCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS GCA 90 bp | GGCTCTCCTGAAAGGGGCAAATATCGAGACTCTCCTCAAATTTCTTaGATATGGTTCTACGCAGCTGAAGCCTCATGGAATACACGGTTG | + |
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Preference number: 5 (lower is better) Translates to: GSPERGKYRDSPQIS*IWFYAAEASWNTRL Trigger: CAACCGTGTATTCCATGAGGCTTCAGCTGCGTAGAACCATATGCAAGAAATTTGAGGAGAGTCTCGATATTTGCCCCTTTCAGGAGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS TCA 90 bp | CTGTTTGTTTCTTTATTGGCCTTCGAGACAGGAGTGATGAGAACATaGAAACTCAGCAGAAGCAGCAGCATGGTGAGAGGCAGAGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: LFVSLLAFETGVMRT*KLSRSSSMVRGRAF Trigger: GAAAGCTCTGCCTCTCACCATGCTGCTGCTTCTGCTGAGTTTTCATGTTCTCATCACTCCTGTCTCGAAGGCCAATAAAGAAACAAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS TCA 90 bp | TGGAATACACGGTTGGAAAATTTACCTTCTCCCTCCAGGAACTCATaGTATGTTCCATCCTGTAGGCATATTCATCCTGACTTTCCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: WNTRLENLPSPSRNS*YVPSCRHIHPDFPG Trigger: ACCAGGAAAGTCAGGATGAATATGCCTACAGGATGGAACATATCATGAGTTCCTGGAGGGAGAAGGTAAATTTTCCAACCGTGTATTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR CAA 90 bp | ATCCACATATCCAGTCTTGATACTGCACAATGCTGCAAAACAAGGAAAATGAGCTCATGGAATACACGGTaGGAAAATTTACCTTCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: IHISSLDTAQCCKTRKMSSWNTR*ENLPSP Trigger: GGGAGAAGGTAAATTTTCCAACCGTGTATTCCATGA...GCTCATTTTCCTTGTTTTGCAGCATTGTGCAGTATCAAGACTGGATATGTGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR CAA 90 bp | ATCCACATATCCAGTCTTGATACTGCACAATGCTGCAAAACAAGGAAAATGAGCAATGAACAGATCTGTTaGTTTCTTTATTGGCCTTCG | + |
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Preference number: 5 (lower is better) Translates to: IHISSLDTAQCCKTRKMSNEQIC*FLYWPS Trigger: CGAAGGCCAATAAAGAAACAAACAGATCTGTTCATT...GCTCATTTTCCTTGTTTTGCAGCATTGTGCAGTATCAAGACTGGATATGTGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS-3UTR CAA 90 bp | GAGCTATTCTACATGATGAAACAACAGCAATGTACACTTTCCCCTCATTATTATCTCTCCTCAAATTTCTaGCATATGGTTCTACGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ELFYMMKQQQCTLSPHYYLSSNF*HMVLRS Trigger: GCTGCGTAGAACCATATGCAAGAAATTTGAGGAGAG...ATAATAATGAGGGGAAAGTGTACATTGCTGTTGTTTCATCATGTAGAATAGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS GCA 72 bp | GAAAGGGGCAAATATCGAGACTCTCCTCAAATTTCTTaGATATGGTTCTACGCAGCTGAAGCCTCATGGAAT | + |
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Preference number: 6 (lower is better) Translates to: ERGKYRDSPQIS*IWFYAAEASWN Trigger: ATTCCATGAGGCTTCAGCTGCGTAGAACCATATGCAAGAAATTTGAGGAGAGTCTCGATATTTGCCCCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS CCA 72 bp | ATTTCTTGCATATGGTTCTACGCAGCTGAAGCCTCATaGAATACACGGTTGGAAAATTTACCTTCTCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: ISCIWFYAAEAS*NTRLENLPSPS Trigger: GGAGGGAGAAGGTAAATTTTCCAACCGTGTATTCCATGAGGCTTCAGCTGCGTAGAACCATATGCAAGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS TCA 72 bp | CTCTCCTCAAATTTCTTGCATATGGTTCTACGCAGCTaGAGCCTCATGGAATACACGGTTGGAAAATTTACC | + |
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Preference number: 6 (lower is better) Translates to: LSSNFLHMVLRS*SLMEYTVGKFT Trigger: GGTAAATTTTCCAACCGTGTATTCCATGAGGCTTCAGCTGCGTAGAACCATATGCAAGAAATTTGAGGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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| CDS TCA 72 bp | AATGTGTTCACGGCAAATTCCACTGTGGGAATGAAATaGACAGATCTGTTTGTTTCTTTATTGGCCTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: NVFTANSTVGMK*TDLFVSLLAFE Trigger: CTCGAAGGCCAATAAAGAAACAAACAGATCTGTTCATTTCATTCCCACAGTGGAATTTGCCGTGAACACATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028935.4 |
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