RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CST8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027442

Ensembl transcript IDs: ENSMUST00000028931.10, ENSMUST00000109947.2

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGCTGATCCACACCAACTaGCAGGGCCACTGGAATGAT +
Preference number: 4 (lower is better)
Translates to: GESVLVTDLNHRLLFITELIHTN*QGHWND
Trigger: ATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAG...CTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR GCA 90 bp GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGGCCATTCCAGGGAAGTaGTCCTACCAGAAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: GESVLVTDLNHRLLFITEAIPGK*SYQKAA
Trigger: TGCAGCTTTCTGGTAGGAGCACTTCCCTGGAATGGC...CTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR GCA 90 bp GACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGCTGATCCACACCAACTaGCAGGGCCACTGGAATGAT +
Preference number: 4 (lower is better)
Translates to: DRLEPQVALYYREKQTQKLIHTN*QGHWND
Trigger: ATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAG...CTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
3UTR CAA 72 bp GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTaGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGT +
Preference number: 4 (lower is better)
Translates to: GESVLVTDLNHR*LFITEKSRPRS
Trigger: ACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR GCA 90 bp TTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGAGGTCCAAAGTAGTTCTGTaGCTTCACTTCATTCTTGGA +
Preference number: 4 (lower is better)
Translates to: LNHRLLFITEKSRPRSGRSKVVL*LHFILG
Trigger: TCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGA...CCTCCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CCA 90 bp GACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGTGTTGTATTCTTTCATaGCAAACCAAACACACTGCT +
Preference number: 4 (lower is better)
Translates to: DLNHRLLFITEKSRPRSGCCILS*QTKHTA
Trigger: AGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACA...CCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR GCA 90 bp ACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTTCCAAAGTAGTTCTGTaGCTTCACTTCATTCTTGGA +
Preference number: 4 (lower is better)
Translates to: TDLNHRLLFITEKSRPRSSKVVL*LHFILG
Trigger: TCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGA...ACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CCA 90 bp GTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCTGTTGTATTCTTTCATaGCAAACCAAACACACTGCT +
Preference number: 4 (lower is better)
Translates to: VGDRLEPQVALYYREKQTCCILS*QTKHTA
Trigger: AGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACA...GGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS GCA 90 bp GTAGTTCTGTGCCTTCACTTCATTCTTGGACTGATCCACACCAACTaGCAGGGCCACTGGAATGATGAAGAGGATCAAGGAGAGCCACAA +
Preference number: 5 (lower is better)
Translates to: VVLCLHFILGLIHTN*QGHWNDEEDQGEPQ
Trigger: TTGTGGCTCTCCTTGATCCTCTTCATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAGTCCAAGAATGAAGTGAAGGCACAGAACTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGTTGGCATGGAGTATCTaGTCCACAAGGAAGACATAT +
Preference number: 5 (lower is better)
Translates to: GESVLVTDLNHRLLFITELAWSI*STRKTY
Trigger: ATATGTCTTCCTTGTGGACAAGATACTCCATGCCAA...CTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGTTGGCATGGAGTATCTaGTCCACAAGGAAGACATAT +
Preference number: 5 (lower is better)
Translates to: DLNHRLLFITEKSRPRSGLAWSI*STRKTY
Trigger: ATATGTCTTCCTTGTGGACAAGATACTCCATGCCAA...CCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGTCCTCACTTTCCTTGTaGTATTCTTTCATGGCAAAC +
Preference number: 5 (lower is better)
Translates to: DLNHRLLFITEKSRPRSGSSLSL*YSFMAN
Trigger: GTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGA...CCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGTTGTCCTCACTTTCCTaGTTGTATTCTTTCATGGCA +
Preference number: 5 (lower is better)
Translates to: GDRLEPQVALYYREKQTQLSSLS*LYSFMA
Trigger: TGCCATGAAAGAATACAACAAGGAAAGTGAGGACAA...CTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp TTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGAGGACAAGGAAGACATATTaGTCCTCACTTTCCTTGTTG +
Preference number: 5 (lower is better)
Translates to: LNHRLLFITEKSRPRSGRTRKTY*SSLSLL
Trigger: CAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGT...CCTCCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGGATCTGAACATCAATTaGGTATTCCATTCGGTCTGT +
Preference number: 5 (lower is better)
Translates to: GDRLEPQVALYYREKQTQDLNIN*VFHSVC
Trigger: ACAGACCGAATGGAATACCAAATTGATGTTCAGATC...CTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp CTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGAGACACACTGCTTCACATaGGCATTAGAGATATTAATG +
Preference number: 5 (lower is better)
Translates to: LEPQVALYYREKQTQKWETHCFT*ALEILM
Trigger: CATTAATATCTCTAATGCCAATGTGAAGCAGTGTGT...CTCCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGGATCTGAACATCAATTaGGTATTCCATTCGGTCTGT +
Preference number: 5 (lower is better)
Translates to: DRLEPQVALYYREKQTQKDLNIN*VFHSVC
Trigger: ACAGACCGAATGGAATACCAAATTGATGTTCAGATC...CTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCACATCTTTACATTCTTaGCTCAACAGGTTGAACTCG +
Preference number: 5 (lower is better)
Translates to: VGDRLEPQVALYYREKQTTSLHS*LNRLNS
Trigger: CGAGTTCAACCTGTTGAGCAAAGAATGTAAAGATGT...GGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp TTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCACATCTTTACATTCTTaGCTCAACAGGTTGAACTCG +
Preference number: 5 (lower is better)
Translates to: LVTDLNHRLLFITEKSRPTSLHS*LNRLNS
Trigger: CGAGTTCAACCTGTTGAGCAAAGAATGTAAAGATGT...GGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp ACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTTCCTCACTTTCCTTGTaGTATTCTTTCATGGCAAAC +
Preference number: 5 (lower is better)
Translates to: TDLNHRLLFITEKSRPRSSSLSL*YSFMAN
Trigger: GTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGA...ACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGAACAAGGAAGACATATTaGTCCTCACTTTCCTTGTTG +
Preference number: 5 (lower is better)
Translates to: VLVTDLNHRLLFITEKSRTRKTY*SSLSLL
Trigger: CAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGT...TCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS-3UTR CAA 90 bp GTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGAACACACTGCTTCACATaGGCATTAGAGATATTAATG +
Preference number: 5 (lower is better)
Translates to: VLVTDLNHRLLFITEKSRTHCFT*ALEILM
Trigger: CATTAATATCTCTAATGCCAATGTGAAGCAGTGTGT...TCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS CCA 72 bp ATTCTTGGACTGATCCACACCAACTGCCAGGGCCACTaGAATGATGAAGAGGATCAAGGAGAGCCACAAGGG +
Preference number: 6 (lower is better)
Translates to: ILGLIHTNCQGH*NDEEDQGEPQG
Trigger: CCCTTGTGGCTCTCCTTGATCCTCTTCATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAGTCCAAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS CCA 72 bp TGGATCCAAAGTAGTTCTGTGCCTTCACTTCATTCTTaGACTGATCCACACCAACTGCCAGGGCCACTGGAA +
Preference number: 6 (lower is better)
Translates to: WIQSSSVPSLHS*TDPHQLPGPLE
Trigger: TTCCAGTGGCCCTGGCAGTTGGTGTGGATCAGTCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS GCA 72 bp GGCATTAGAGATATTAATGGATCCAAAGTAGTTCTGTaGCTTCACTTCATTCTTGGACTGATCCACACCAAC +
Preference number: 6 (lower is better)
Translates to: GIRDINGSKVVL*LHFILGLIHTN
Trigger: GTTGGTGTGGATCAGTCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGATCCATTAATATCTCTAATGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS CAA 90 bp TGGAGTATCTTGTCCACAAGGAAGACATATTTGTCCTCACTTTCCTaGTTGTATTCTTTCATGGCAAACCAAACACACTGCTTCACATTG +
Preference number: 6 (lower is better)
Translates to: WSILSTRKTYLSSLS*LYSFMANQTHCFTL
Trigger: CAATGTGAAGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGTGGACAAGATACTCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS TCA 72 bp AGATCTGAACATCAATTTGGTATTCCATTCGGTCTGTaGTCTGAAGTTTGGCATGGAGTATCTTGTCCACAA +
Preference number: 6 (lower is better)
Translates to: RSEHQFGIPFGL*SEVWHGVSCPQ
Trigger: TTGTGGACAAGATACTCCATGCCAAACTTCAGATCACAGACCGAATGGAATACCAAATTGATGTTCAGATCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS CAA 72 bp TTGTCCACAAGGAAGACATATTTGTCCTCACTTTCCTaGTTGTATTCTTTCATGGCAAACCAAACACACTGC +
Preference number: 6 (lower is better)
Translates to: LSTRKTYLSSLS*LYSFMANQTHC
Trigger: GCAGTGTGTTTGGTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGTGGACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2
CDS GCA 72 bp TCCTTGTTGTATTCTTTCATGGCAAACCAAACACACTaGTTCACATTGGCATTAGAGATATTAATGGATCCA +
Preference number: 6 (lower is better)
Translates to: SLLYSFMANQTH*FTLALEILMDP
Trigger: TGGATCCATTAATATCTCTAATGCCAATGTGAAGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACAAGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028931.10
ENSMUST00000109947.2