Pregenerated sensors for CST8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027442Ensembl transcript IDs: ENSMUST00000028931.10, ENSMUST00000109947.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR GCA 90 bp | GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGCTGATCCACACCAACTaGCAGGGCCACTGGAATGAT | + |
Preference number: 4 (lower is better) Translates to: GESVLVTDLNHRLLFITELIHTN*QGHWND Trigger: ATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAG...CTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR GCA 90 bp | GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGGCCATTCCAGGGAAGTaGTCCTACCAGAAAGCTGCA | + |
Preference number: 4 (lower is better) Translates to: GESVLVTDLNHRLLFITEAIPGK*SYQKAA Trigger: TGCAGCTTTCTGGTAGGAGCACTTCCCTGGAATGGC...CTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR GCA 90 bp | GACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGCTGATCCACACCAACTaGCAGGGCCACTGGAATGAT | + |
Preference number: 4 (lower is better) Translates to: DRLEPQVALYYREKQTQKLIHTN*QGHWND Trigger: ATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAG...CTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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3UTR CAA 72 bp | GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTaGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGT | + |
Preference number: 4 (lower is better) Translates to: GESVLVTDLNHR*LFITEKSRPRS Trigger: ACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR GCA 90 bp | TTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGAGGTCCAAAGTAGTTCTGTaGCTTCACTTCATTCTTGGA | + |
Preference number: 4 (lower is better) Translates to: LNHRLLFITEKSRPRSGRSKVVL*LHFILG Trigger: TCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGA...CCTCCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CCA 90 bp | GACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGTGTTGTATTCTTTCATaGCAAACCAAACACACTGCT | + |
Preference number: 4 (lower is better) Translates to: DLNHRLLFITEKSRPRSGCCILS*QTKHTA Trigger: AGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACA...CCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR GCA 90 bp | ACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTTCCAAAGTAGTTCTGTaGCTTCACTTCATTCTTGGA | + |
Preference number: 4 (lower is better) Translates to: TDLNHRLLFITEKSRPRSSKVVL*LHFILG Trigger: TCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGA...ACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CCA 90 bp | GTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCTGTTGTATTCTTTCATaGCAAACCAAACACACTGCT | + |
Preference number: 4 (lower is better) Translates to: VGDRLEPQVALYYREKQTCCILS*QTKHTA Trigger: AGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACA...GGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS GCA 90 bp | GTAGTTCTGTGCCTTCACTTCATTCTTGGACTGATCCACACCAACTaGCAGGGCCACTGGAATGATGAAGAGGATCAAGGAGAGCCACAA | + |
Preference number: 5 (lower is better) Translates to: VVLCLHFILGLIHTN*QGHWNDEEDQGEPQ Trigger: TTGTGGCTCTCCTTGATCCTCTTCATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAGTCCAAGAATGAAGTGAAGGCACAGAACTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GGGGAAAGTGTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGTTGGCATGGAGTATCTaGTCCACAAGGAAGACATAT | + |
Preference number: 5 (lower is better) Translates to: GESVLVTDLNHRLLFITELAWSI*STRKTY Trigger: ATATGTCTTCCTTGTGGACAAGATACTCCATGCCAA...CTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACACACTTTCCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGTTGGCATGGAGTATCTaGTCCACAAGGAAGACATAT | + |
Preference number: 5 (lower is better) Translates to: DLNHRLLFITEKSRPRSGLAWSI*STRKTY Trigger: ATATGTCTTCCTTGTGGACAAGATACTCCATGCCAA...CCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGTCCTCACTTTCCTTGTaGTATTCTTTCATGGCAAAC | + |
Preference number: 5 (lower is better) Translates to: DLNHRLLFITEKSRPRSGSSLSL*YSFMAN Trigger: GTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGA...CCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGTTGTCCTCACTTTCCTaGTTGTATTCTTTCATGGCA | + |
Preference number: 5 (lower is better) Translates to: GDRLEPQVALYYREKQTQLSSLS*LYSFMA Trigger: TGCCATGAAAGAATACAACAAGGAAAGTGAGGACAA...CTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | TTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGAGGACAAGGAAGACATATTaGTCCTCACTTTCCTTGTTG | + |
Preference number: 5 (lower is better) Translates to: LNHRLLFITEKSRPRSGRTRKTY*SSLSLL Trigger: CAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGT...CCTCCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGGATCTGAACATCAATTaGGTATTCCATTCGGTCTGT | + |
Preference number: 5 (lower is better) Translates to: GDRLEPQVALYYREKQTQDLNIN*VFHSVC Trigger: ACAGACCGAATGGAATACCAAATTGATGTTCAGATC...CTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | CTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTGGGAGACACACTGCTTCACATaGGCATTAGAGATATTAATG | + |
Preference number: 5 (lower is better) Translates to: LEPQVALYYREKQTQKWETHCFT*ALEILM Trigger: CATTAATATCTCTAATGCCAATGTGAAGCAGTGTGT...CTCCCACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGGATCTGAACATCAATTaGGTATTCCATTCGGTCTGT | + |
Preference number: 5 (lower is better) Translates to: DRLEPQVALYYREKQTQKDLNIN*VFHSVC Trigger: ACAGACCGAATGGAATACCAAATTGATGTTCAGATC...CTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCACATCTTTACATTCTTaGCTCAACAGGTTGAACTCG | + |
Preference number: 5 (lower is better) Translates to: VGDRLEPQVALYYREKQTTSLHS*LNRLNS Trigger: CGAGTTCAACCTGTTGAGCAAAGAATGTAAAGATGT...GGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | TTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCACATCTTTACATTCTTaGCTCAACAGGTTGAACTCG | + |
Preference number: 5 (lower is better) Translates to: LVTDLNHRLLFITEKSRPTSLHS*LNRLNS Trigger: CGAGTTCAACCTGTTGAGCAAAGAATGTAAAGATGT...GGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | ACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGACCCAGAAGTTCCTCACTTTCCTTGTaGTATTCTTTCATGGCAAAC | + |
Preference number: 5 (lower is better) Translates to: TDLNHRLLFITEKSRPRSSSLSL*YSFMAN Trigger: GTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGA...ACTTCTGGGTCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGAACAAGGAAGACATATTaGTCCTCACTTTCCTTGTTG | + |
Preference number: 5 (lower is better) Translates to: VLVTDLNHRLLFITEKSRTRKTY*SSLSLL Trigger: CAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGT...TCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS-3UTR CAA 90 bp | GTGTTGGTGACAGACTTGAACCACAGGTTGCTCTTTATTACAGAGAAAAGCAGAACACACTGCTTCACATaGGCATTAGAGATATTAATG | + |
Preference number: 5 (lower is better) Translates to: VLVTDLNHRLLFITEKSRTHCFT*ALEILM Trigger: CATTAATATCTCTAATGCCAATGTGAAGCAGTGTGT...TCTGCTTTTCTCTGTAATAAAGAGCAACCTGTGGTTCAAGTCTGTCACCAACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS CCA 72 bp | ATTCTTGGACTGATCCACACCAACTGCCAGGGCCACTaGAATGATGAAGAGGATCAAGGAGAGCCACAAGGG | + |
Preference number: 6 (lower is better) Translates to: ILGLIHTNCQGH*NDEEDQGEPQG Trigger: CCCTTGTGGCTCTCCTTGATCCTCTTCATCATTCCAGTGGCCCTGGCAGTTGGTGTGGATCAGTCCAAGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS CCA 72 bp | TGGATCCAAAGTAGTTCTGTGCCTTCACTTCATTCTTaGACTGATCCACACCAACTGCCAGGGCCACTGGAA | + |
Preference number: 6 (lower is better) Translates to: WIQSSSVPSLHS*TDPHQLPGPLE Trigger: TTCCAGTGGCCCTGGCAGTTGGTGTGGATCAGTCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS GCA 72 bp | GGCATTAGAGATATTAATGGATCCAAAGTAGTTCTGTaGCTTCACTTCATTCTTGGACTGATCCACACCAAC | + |
Preference number: 6 (lower is better) Translates to: GIRDINGSKVVL*LHFILGLIHTN Trigger: GTTGGTGTGGATCAGTCCAAGAATGAAGTGAAGGCACAGAACTACTTTGGATCCATTAATATCTCTAATGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS CAA 90 bp | TGGAGTATCTTGTCCACAAGGAAGACATATTTGTCCTCACTTTCCTaGTTGTATTCTTTCATGGCAAACCAAACACACTGCTTCACATTG | + |
Preference number: 6 (lower is better) Translates to: WSILSTRKTYLSSLS*LYSFMANQTHCFTL Trigger: CAATGTGAAGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGTGGACAAGATACTCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS TCA 72 bp | AGATCTGAACATCAATTTGGTATTCCATTCGGTCTGTaGTCTGAAGTTTGGCATGGAGTATCTTGTCCACAA | + |
Preference number: 6 (lower is better) Translates to: RSEHQFGIPFGL*SEVWHGVSCPQ Trigger: TTGTGGACAAGATACTCCATGCCAAACTTCAGATCACAGACCGAATGGAATACCAAATTGATGTTCAGATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS CAA 72 bp | TTGTCCACAAGGAAGACATATTTGTCCTCACTTTCCTaGTTGTATTCTTTCATGGCAAACCAAACACACTGC | + |
Preference number: 6 (lower is better) Translates to: LSTRKTYLSSLS*LYSFMANQTHC Trigger: GCAGTGTGTTTGGTTTGCCATGAAAGAATACAACAAGGAAAGTGAGGACAAATATGTCTTCCTTGTGGACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |
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CDS GCA 72 bp | TCCTTGTTGTATTCTTTCATGGCAAACCAAACACACTaGTTCACATTGGCATTAGAGATATTAATGGATCCA | + |
Preference number: 6 (lower is better) Translates to: SLLYSFMANQTH*FTLALEILMDP Trigger: TGGATCCATTAATATCTCTAATGCCAATGTGAAGCAGTGTGTTTGGTTTGCCATGAAAGAATACAACAAGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028931.10 ENSMUST00000109947.2 |