Pregenerated sensors for CST7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068129Ensembl transcript IDs: ENSMUST00000089200.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTCTGCACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTGCCCACATCCTCAGGCCCTGAGGATCTaGGATGGCCAGGATGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: LCTCSSNVIKGLSACPHPQALRI*DGQDGV Trigger: CACCCCATCCTGGCCATCTCAGATCCTCAGGGCCTG...AGGATGTGGGCACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGTGCAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR-3UTR CCA 90 bp | TCCAGCCCCCTGATGACCCACTGGCATGTTAATCTGCTCGCTGGTAAGCAGGCCGTGGAAAGTAAGGAGTaGGGAAAACACGAGTGGATA | + |
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Preference number: 2 (lower is better) Translates to: SSPLMTHWHVNLLAGKQAVESKE*GKHEWI Trigger: TATCCACTCGTGTTTTCCCCACTCCTTACTTTCCAC...GGCCTGCTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR-3UTR CCA 90 bp | CAGTCCAGCCCCCTGATGACCCACTGGCATGTTAATCTGCTCGCTGGTAAGCAGTGGGGAAAACACGAGTaGATATGTATCACAGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: QSSPLMTHWHVNLLAGKQWGKHE*ICITAA Trigger: TGCAGCTGTGATACATATCCACTCGTGTTTTCCCCA...CTGCTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGACTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR-3UTR CCA 90 bp | ACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTGCCCACATCCTGAATCTCCTGAGGATCTGAGATaGCCAGGATGGGGTGGAAAG | + |
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Preference number: 2 (lower is better) Translates to: TCSSNVIKGLSACPHPESPEDLR*PGWGGK Trigger: CTTTCCACCCCATCCTGGCCATCTCAGATCCTCAGG...AGATTCAGGATGTGGGCACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR CAA 90 bp | TCTGCTCATGCAGTCGGGCATCAAGAAGCTTCCCACACTACCACCTaGTTGACTGTATCTGCTTTGCTCTGCACGTGCTCCAGTAATGTC | + |
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Preference number: 2 (lower is better) Translates to: SAHAVGHQEASHTTT*LTVSALLCTCSSNV Trigger: GACATTACTGGAGCACGTGCAGAGCAAAGCAGATACAGTCAACAAGGTGGTAGTGTGGGAAGCTTCTTGATGCCCGACTGCATGAGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR-3UTR GCA 90 bp | CAGTCCAGCCCCCTGATGACCCACTGGCATGTTAATCTGCTCGCTGGTAAGCAGGATATGTATCACAGCTaGAGTCTTGCTAAAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: QSSPLMTHWHVNLLAGKQDMYHS*SLAKET Trigger: TGTCTCTTTAGCAAGACTGCAGCTGTGATACATATC...CTGCTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR-3UTR CCA 90 bp | TTCATTTTAGAAGAAAGTGTGAATACAGTTAATCTGGAGAGGAGGGCACTATATATGGCCAGGATGGGGTaGAAAGTAAGGAGTGGGGAA | + |
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Preference number: 2 (lower is better) Translates to: FILEESVNTVNLERRALYMARMG*KVRSGE Trigger: TTCCCCACTCCTTACTTTCCACCCCATCCTGGCCAT...ATATAGTGCCCTCCTCTCCAGATTAACTGTATTCACACTTTCTTCTAAAATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR TCA 72 bp | GTTAATCTGCTCGCTGGTAAGCAGGCCCTGAGGATCTaGGATGGCCAGGATGGGGTGGAAAGTAAGGAGTGG | + |
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Preference number: 3 (lower is better) Translates to: VNLLAGKQALRI*DGQDGVESKEW Trigger: CCACTCCTTACTTTCCACCCCATCCTGGCCATCTCAGATCCTCAGGGCCTGCTTACCAGCGAGCAGATTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR CCA 72 bp | ACTATATTCTCCCAGTCCAGCCCCCTGATGACCCACTaGCATGTTAATCTGCTCGCTGGTAAGCAGGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: TIFSQSSPLMTH*HVNLLAGKQAL Trigger: CAGGGCCTGCTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGACTGGGAGAATATAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR GCA 72 bp | ACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTaGCCACATCCTGAATCTAGGTGTGTAGCACCAGAG | + |
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Preference number: 3 (lower is better) Translates to: TCSSNVIKGLSA*PHPESRCVAPE Trigger: CTCTGGTGCTACACACCTAGATTCAGGATGTGGGCACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR GCA 72 bp | ACCACCTTGTTGACTGTATCTGCTTTGCTCTGCACGTaGTCCAGTAATGTCATCAAAGGACTCTCTGCGTGC | + |
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Preference number: 3 (lower is better) Translates to: TTLLTVSALLCT*SSNVIKGLSAC Trigger: GCACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGTGCAGAGCAAAGCAGATACAGTCAACAAGGTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR GCA 72 bp | CACACTACCACCTTGTTGACTGTATCTGCTTTGCTCTaGACGTGCTCCAGTAATGTCATCAAAGGACTCTCT | + |
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Preference number: 3 (lower is better) Translates to: HTTTLLTVSALL*TCSSNVIKGLS Trigger: AGAGAGTCCTTTGATGACATTACTGGAGCACGTGCAGAGCAAAGCAGATACAGTCAACAAGGTGGTAGTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CCA 90 bp | TGCTCTGCACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTGCCCACATCGGCACCTCAAAACTGTaGAGCCAGGGGATGACCCAG | + |
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Preference number: 4 (lower is better) Translates to: CSARAPVMSSKDSLRAHIGTSKL*SQGMTQ Trigger: CTGGGTCATCCCCTGGCTCCACAGTTTTGAGGTGCC...GATGTGGGCACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGTGCAGAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| 3UTR CAA 72 bp | GCAGTCGGGCATCAAGAAGCTTCCCACACTACCACCTaGTTGACTGTATCTGCTTTGCTCTGCACGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: AVGHQEASHTTT*LTVSALLCTCS Trigger: GGAGCACGTGCAGAGCAAAGCAGATACAGTCAACAAGGTGGTAGTGTGGGAAGCTTCTTGATGCCCGACTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR TCA 90 bp | CAGTCCAGCCCCCTGATGACCCACTGGCATGTTAATCTGCTCGCTGGTAAGCAGCATTTGTGCAGTTGTTaGACTTTTCCACACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: QSSPLMTHWHVNLLAGKQHLCSC*TFPHCA Trigger: GGCACAGTGTGGAAAAGTTCAACAACTGCACAAATG...CTGCTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGACTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR GCA 90 bp | ACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTGCCCACATCCTGAATCTAACTTTTCCACACTGTaGCTGGCGGCCTTAAGCACT | + |
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Preference number: 4 (lower is better) Translates to: TCSSNVIKGLSACPHPESNFSTL*LAALST Trigger: AGTGCTTAAGGCCGCCAGGCACAGTGTGGAAAAGTT...AGATTCAGGATGTGGGCACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CCA 90 bp | GGGTGGAAAGTAAGGAGTGGGGAAAACACGAGTGGATATGTATCACAGCTGCAGGCACTCCTGGGTTATTaGTCTCTATTGTTTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: GWKVRSGENTSGYVSQLQALLGY*SLLFWG Trigger: TCCCCAAAACAATAGAGACCAATAACCCAGGAGTGC...CTGCAGCTGTGATACATATCCACTCGTGTTTTCCCCACTCCTTACTTTCCACCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CCA 90 bp | TATCTGCTTTGCTCTGCACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTGCTTCAAGGCAGGGTTaGTTTGGAAGTCACAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: YLLCSARAPVMSSKDSLRASRQG*FGSHSC Trigger: ACAACTGTGACTTCCAAACCAACCCTGCCTTGAAGC...ACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGTGCAGAGCAAAGCAGATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CCA 90 bp | GGGTGGAAAGTAAGGAGTGGGGAAAACACGAGTGGATATGTATCACAGCTGCAGATCCTGGCTTCACACTaGAGATCAAATCTTTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: GWKVRSGENTSGYVSQLQILASH*RSNLWN Trigger: GTTCCAAAGATTTGATCTCCAGTGTGAAGCCAGGAT...CTGCAGCTGTGATACATATCCACTCGTGTTTTCCCCACTCCTTACTTTCCACCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CCA 90 bp | GAAAGTGTGAATACAGTTAATCTGGAGAGGAGGGCACTATATTCTCCCAGTCCAAAGGCAGGGTTGGTTTaGAAGTCACAGTTGTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: ESVNTVNLERRALYSPSPKAGLV*KSQLSS Trigger: ACTGGACAACTGTGACTTCCAAACCAACCCTGCCTT...TGGACTGGGAGAATATAGTGCCCTCCTCTCCAGATTAACTGTATTCACACTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR TCA 90 bp | TTCATTTTAGAAGAAAGTGTGAATACAGTTAATCTGGAGAGGAGGGCACTATATTGTGGAGCCAGGGGATaGCCCAGACTTCAGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: FILEESVNTVNLERRALYCGARG*PRLQSS Trigger: GCTACTCTGAAGTCTGGGTCATCCCCTGGCTCCACA...ATATAGTGCCCTCCTCTCCAGATTAACTGTATTCACACTTTCTTCTAAAATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS TCA 90 bp | ACTGGCAGAGGAGAACAGGCACCTCAAAACTGTGGAGCCAGGGGATaGCCCAGACTTCAGAGTAGCAATATAGAGTCCGCTTCAAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: TGRGEQAPQNCGARG*PRLQSSNIESASRQ Trigger: CTGCCTTGAAGCGGACTCTATATTGCTACTCTGAAGTCTGGGTCATCCCCTGGCTCCACAGTTTTGAGGTGCCTGTTCTCCTCTGCCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS TCA 90 bp | CGCTTCAAGGCAGGGTTGGTTTGGAAGTCACAGTTGTCCAGTTGGTaGTGCATGGTCTTCCTGCATGTAGTTCGGCCGATTTTCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: RFKAGLVWKSQLSSW*CMVFLHVVRPIFTS Trigger: GGAGGTGAAAATCGGCCGAACTACATGCAGGAAGACCATGCATCACCAACTGGACAACTGTGACTTCCAAACCAACCCTGCCTTGAAGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CAA 90 bp | TCCAGCCCCCTGATGACCCACTGGCATGTTAATCTGCTCGCTGGTAAGCAGGCCTCATTTGTGCAGTTGTaGAACTTTTCCACACTGTGC | + |
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Preference number: 5 (lower is better) Translates to: SSPLMTHWHVNLLAGKQASFVQL*NFSTLC Trigger: GCACAGTGTGGAAAAGTTCAACAACTGCACAAATGA...GGCCTGCTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CCA 90 bp | CCCAGACTTCAGAGTAGCAATATAGAGTCCGCTTCAAGGCAGGGTTaGTTTGGAAGTCACAGTTGTCCAGTTGGTGATGCATGGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: PRLQSSNIESASRQG*FGSHSCPVGDAWSS Trigger: GGAAGACCATGCATCACCAACTGGACAACTGTGACTTCCAAACCAACCCTGCCTTGAAGCGGACTCTATATTGCTACTCTGAAGTCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CAA 90 bp | CAGTCCAGCCCCCTGATGACCCACTGGCATGTTAATCTGCTCGCTGGTAAGCAGATGTCATTTGTGCAGTaGTTGAACTTTTCCACACTG | + |
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Preference number: 5 (lower is better) Translates to: QSSPLMTHWHVNLLAGKQMSFVQ*LNFSTL Trigger: CAGTGTGGAAAAGTTCAACAACTGCACAAATGACAT...CTGCTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGACTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CAA 90 bp | TCCCAGTCCAGCCCCCTGATGACCCACTGGCATGTTAATCTGCTCGCTGGTAAGCTGACATGGGACTCCTaGAACAAAAAGATGTCATTT | + |
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Preference number: 5 (lower is better) Translates to: SQSSPLMTHWHVNLLAGKLTWDS*NKKMSF Trigger: AAATGACATCTTTTTGTTCAAGGAGTCCCATGTCAG...CTTACCAGCGAGCAGATTAACATGCCAGTGGGTCATCAGGGGGCTGGACTGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CAA 90 bp | TATCTGCTTTGCTCTGCACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTCAAGGCAGGGTTGGTTaGGAAGTCACAGTTGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: YLLCSARAPVMSSKDSLRQGRVG*EVTVVQ Trigger: CTGGACAACTGTGACTTCCAAACCAACCCTGCCTTG...ACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGTGCAGAGCAAAGCAGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CAA 90 bp | ACGTGCTCCAGTAATGTCATCAAAGGACTCTCTGCGTGCCCACATCCTGAATCTTTGGTCTCTATTGTTTaGGGGAATCCTGGCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: TCSSNVIKGLSACPHPESLVSIV*GNPGFT Trigger: TGTGAAGCCAGGATTCCCCAAAACAATAGAGACCAA...AGATTCAGGATGTGGGCACGCAGAGAGTCCTTTGATGACATTACTGGAGCACGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CAA 90 bp | GAAAGTGTGAATACAGTTAATCTGGAGAGGAGGGCACTATATTCTCCCAGTCCACGCTTCAAGGCAGGGTaGGTTTGGAAGTCACAGTTG | + |
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Preference number: 5 (lower is better) Translates to: ESVNTVNLERRALYSPSPRFKAG*VWKSQL Trigger: CAACTGTGACTTCCAAACCAACCCTGCCTTGAAGCG...TGGACTGGGAGAATATAGTGCCCTCCTCTCCAGATTAACTGTATTCACACTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS-3UTR CAA 90 bp | TTGACTGTATCTGCTTTGCTCTGCACGTGCTCCAGTAATGTCATCAAAGGACTCGGTTATTGGTCTCTATaGTTTTGGGGAATCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: LTVSALLCTCSSNVIKGLGYWSL*FWGILA Trigger: AGCCAGGATTCCCCAAAACAATAGAGACCAATAACC...GAGTCCTTTGATGACATTACTGGAGCACGTGCAGAGCAAAGCAGATACAGTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CCA 90 bp | ATATATTTCAGGCCTTTCACCACCTGTACCAGGGCTTTGCTGACATaGGACTCCTTGAACAAAAAGATGTCATTTGTGCAGTTGTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: IYFRPFTTCTRALLT*DSLNKKMSFVQLLN Trigger: GTTCAACAACTGCACAAATGACATCTTTTTGTTCAAGGAGTCCCATGTCAGCAAAGCCCTGGTACAGGTGGTGAAAGGCCTGAAATATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS TCA 72 bp | GGAGAACAGGCACCTCAAAACTGTGGAGCCAGGGGATaGCCCAGACTTCAGAGTAGCAATATAGAGTCCGCT | + |
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Preference number: 6 (lower is better) Translates to: GEQAPQNCGARG*PRLQSSNIESA Trigger: AGCGGACTCTATATTGCTACTCTGAAGTCTGGGTCATCCCCTGGCTCCACAGTTTTGAGGTGCCTGTTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 90 bp | AGTCCGCTTCAAGGCAGGGTTGGTTTGGAAGTCACAGTTGTCCAGTaGGTGATGCATGGTCTTCCTGCATGTAGTTCGGCCGATTTTCAC | + |
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Preference number: 6 (lower is better) Translates to: SPLQGRVGLEVTVVQ*VMHGLPACSSADFH Trigger: GTGAAAATCGGCCGAACTACATGCAGGAAGACCATGCATCACCAACTGGACAACTGTGACTTCCAAACCAACCCTGCCTTGAAGCGGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS TCA 72 bp | GCAGGGTTGGTTTGGAAGTCACAGTTGTCCAGTTGGTaGTGCATGGTCTTCCTGCATGTAGTTCGGCCGATT | + |
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Preference number: 6 (lower is better) Translates to: AGLVWKSQLSSW*CMVFLHVVRPI Trigger: AATCGGCCGAACTACATGCAGGAAGACCATGCATCACCAACTGGACAACTGTGACTTCCAAACCAACCCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 72 bp | ACACTGTGCCTGGCGGCCTTAAGCACTCCTGGGTTATaGGTCTCTATTGTTTTGGGGAATCCTGGCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: TLCLAALSTPGL*VSIVLGNPGFT Trigger: TGTGAAGCCAGGATTCCCCAAAACAATAGAGACCAATAACCCAGGAGTGCTTAAGGCCGCCAGGCACAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 90 bp | CTGACATGGGACTCCTTGAACAAAAAGATGTCATTTGTGCAGTTGTaGAACTTTTCCACACTGTGCCTGGCGGCCTTAAGCACTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LTWDSLNKKMSFVQL*NFSTLCLAALSTPG Trigger: CCCAGGAGTGCTTAAGGCCGCCAGGCACAGTGTGGAAAAGTTCAACAACTGCACAAATGACATCTTTTTGTTCAAGGAGTCCCATGTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CCA 72 bp | CAGAGTAGCAATATAGAGTCCGCTTCAAGGCAGGGTTaGTTTGGAAGTCACAGTTGTCCAGTTGGTGATGCA | + |
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Preference number: 6 (lower is better) Translates to: QSSNIESASRQG*FGSHSCPVGDA Trigger: TGCATCACCAACTGGACAACTGTGACTTCCAAACCAACCCTGCCTTGAAGCGGACTCTATATTGCTACTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 90 bp | TGCCTGGCGGCCTTAAGCACTCCTGGGTTATTGGTCTCTATTGTTTaGGGGAATCCTGGCTTCACACTGGAGATCAAATCTTTGGAACAA | + |
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Preference number: 6 (lower is better) Translates to: CLAALSTPGLLVSIV*GNPGFTLEIKSLEQ Trigger: TTGTTCCAAAGATTTGATCTCCAGTGTGAAGCCAGGATTCCCCAAAACAATAGAGACCAATAACCCAGGAGTGCTTAAGGCCGCCAGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 90 bp | TTGCTGACATGGGACTCCTTGAACAAAAAGATGTCATTTGTGCAGTaGTTGAACTTTTCCACACTGTGCCTGGCGGCCTTAAGCACTCCT | + |
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Preference number: 6 (lower is better) Translates to: LLTWDSLNKKMSFVQ*LNFSTLCLAALSTP Trigger: AGGAGTGCTTAAGGCCGCCAGGCACAGTGTGGAAAAGTTCAACAACTGCACAAATGACATCTTTTTGTTCAAGGAGTCCCATGTCAGCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 90 bp | AGGCCTTTCACCACCTGTACCAGGGCTTTGCTGACATGGGACTCCTaGAACAAAAAGATGTCATTTGTGCAGTTGTTGAACTTTTCCACA | + |
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Preference number: 6 (lower is better) Translates to: RPFTTCTRALLTWDS*NKKMSFVQLLNFST Trigger: TGTGGAAAAGTTCAACAACTGCACAAATGACATCTTTTTGTTCAAGGAGTCCCATGTCAGCAAAGCCCTGGTACAGGTGGTGAAAGGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 72 bp | GCCTTAAGCACTCCTGGGTTATTGGTCTCTATTGTTTaGGGGAATCCTGGCTTCACACTGGAGATCAAATCT | + |
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Preference number: 6 (lower is better) Translates to: ALSTPGLLVSIV*GNPGFTLEIKS Trigger: AGATTTGATCTCCAGTGTGAAGCCAGGATTCCCCAAAACAATAGAGACCAATAACCCAGGAGTGCTTAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 72 bp | TGGGACTCCTTGAACAAAAAGATGTCATTTGTGCAGTaGTTGAACTTTTCCACACTGTGCCTGGCGGCCTTA | + |
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Preference number: 6 (lower is better) Translates to: WDSLNKKMSFVQ*LNFSTLCLAAL Trigger: TAAGGCCGCCAGGCACAGTGTGGAAAAGTTCAACAACTGCACAAATGACATCTTTTTGTTCAAGGAGTCCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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| CDS CAA 72 bp | ATATATTTCAGGCCTTTCACCACCTGTACCAGGGCTTaGCTGACATGGGACTCCTTGAACAAAAAGATGTCA | + |
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Preference number: 6 (lower is better) Translates to: IYFRPFTTCTRA*LTWDSLNKKMS Trigger: TGACATCTTTTTGTTCAAGGAGTCCCATGTCAGCAAAGCCCTGGTACAGGTGGTGAAAGGCCTGAAATATAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089200.3 |
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