RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CST3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027447

Ensembl transcript IDs: ENSMUST00000028938.7, ENSMUST00000144845.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AAGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCTGCCTaGAGCAGCTCCTTTACTGTCTCCTGGTGCAAACACACTGGCGGT +
Preference number: 1 (lower is better)
Translates to: KSGARGQLFRCAEPA*SSSFTVSWCKHTGG
Trigger: ACCGCCAGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR GCA 90 bp GGTGCAAACACACTGGCGGTGCCCTCCAGAGCCGGAGCACCCTTCTaGGAGATGAAACACTATAGGGAAGGAGCACAAGTAAGGAACAGT +
Preference number: 1 (lower is better)
Translates to: GANTLAVPSRAGAPF*EMKHYREGAQVRNS
Trigger: ACTGTTCCTTACTTGTGCTCCTTCCCTATAGTGTTTCATCTCGCAGAAGGGTGCTCCGGCTCTGGAGGGCACCGCCAGTGTGTTTGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR GCA 90 bp CAAGAAGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCTaGCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACACACTGG +
Preference number: 1 (lower is better)
Translates to: QEEWSQGTAVQMCRT*LQQLLYCLLVQTHW
Trigger: CCAGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCTTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR GCA 90 bp CAGGTACTGCAAGAAGAGTGGAGCCAGGGGACAGCTGTTCAGATGTaGAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAA +
Preference number: 1 (lower is better)
Translates to: QVLQEEWSQGTAVQM*RTCLQQLLYCLLVQ
Trigger: TTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCTTCTTGCAGTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR-3UTR TCA 90 bp AGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCTGCCTGCAGCAGCTCACCCTTCTGCGAGATaGAACACTATAGGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: RVEPGDSCSDVQNLPAAAHPSAR*NTIGKE
Trigger: CTCCTTCCCTATAGTGTTTCATCTCGCAGAAGGGTG...AGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR-3UTR GCA 90 bp ATGGCAGGTACTGCAAGAAGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGTTTACTGTCTCCTGGTaGAAACACACTGGCGGTGCC +
Preference number: 2 (lower is better)
Translates to: MAGTARRVEPGDSCSDVQFTVSW*KHTGGA
Trigger: GGCACCGCCAGTGTGTTTGCACCAGGAGACAGTAAA...CTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCTTCTTGCAGTACCTGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR-3UTR GCA 90 bp CAGATGTGCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACAGCCGGAGCACCCTTCTaGGAGATGAAACACTATAGG +
Preference number: 2 (lower is better)
Translates to: QMCRTCLQQLLYCLLVQTAGAPF*EMKHYR
Trigger: CCTATAGTGTTTCATCTCGCAGAAGGGTGCTCCGGC...TGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR CCA 72 bp CAGCAGCTCCTTTACTGTCTCCTGGTGCAAACACACTaGCGGTGCCCTCCAGAGCCGGAGCACCCTTCTGCG +
Preference number: 3 (lower is better)
Translates to: QQLLYCLLVQTH*RCPPEPEHPSA
Trigger: CGCAGAAGGGTGCTCCGGCTCTGGAGGGCACCGCCAGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR CCA 72 bp GCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTaGTGCAAACACACTGGCGGTGCCCTCCAGAGCCGG +
Preference number: 3 (lower is better)
Translates to: AEPACSSSFTVS*CKHTGGALQSR
Trigger: CCGGCTCTGGAGGGCACCGCCAGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR GCA 72 bp ACACTGGCGGTGCCCTCCAGAGCCGGAGCACCCTTCTaGGAGATGAAACACTATAGGGAAGGAGCACAAGTA +
Preference number: 3 (lower is better)
Translates to: TLAVPSRAGAPF*EMKHYREGAQV
Trigger: TACTTGTGCTCCTTCCCTATAGTGTTTCATCTCGCAGAAGGGTGCTCCGGCTCTGGAGGGCACCGCCAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR GCA 72 bp GCCAGGGGACAGCTGTTCAGATGTGCAGAACCTGCCTaGAGCAGCTCCTTTACTGTCTCCTGGTGCAAACAC +
Preference number: 3 (lower is better)
Translates to: ARGQLFRCAEPA*SSSFTVSWCKH
Trigger: GTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
3UTR GCA 72 bp TGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCTaGCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAA +
Preference number: 3 (lower is better)
Translates to: WSQGTAVQMCRT*LQQLLYCLLVQ
Trigger: TTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR CCA 90 bp GCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACACACTGGCGCACGCCTTCCTCATTaGCATCTGCCTCCTCCGGGG +
Preference number: 4 (lower is better)
Translates to: AEPACSSSFTVSWCKHTGARLPH*HLPPPG
Trigger: CCCCGGAGGAGGCAGATGCCAATGAGGAAGGCGTGC...GCCAGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR GCA 90 bp TGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACACACTGGCGGTGCCCTTTCCTCATTGGCATCTaGCTCCTCCGGGGCTCCCAA +
Preference number: 4 (lower is better)
Translates to: CLQQLLYCLLVQTHWRCPFLIGI*LLRGSQ
Trigger: TTGGGAGCCCCGGAGGAGGCAGATGCCAATGAGGAA...AGGGCACCGCCAGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR GCA 90 bp GAAGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCTGCCTGCAGCAGTGTGGTACGCATCGTTaGTGCCCTTGTTGTACTCGC +
Preference number: 4 (lower is better)
Translates to: EEWSQGTAVQMCRTCLQQCGTHR*CPCCTR
Trigger: GCGAGTACAACAAGGGCAGCAACGATGCGTACCACA...CTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR CCA 90 bp CAGGTACTGCAAGAAGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCCTCTCACCACCTGTATaGCGCGGCTGTGGTACGCAT +
Preference number: 4 (lower is better)
Translates to: QVLQEEWSQGTAVQMCRTLSPPV*RGCGTH
Trigger: ATGCGTACCACAGCCGCGCCATACAGGTGGTGAGAG...GGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCTTCTTGCAGTACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR GCA 90 bp TCAGATGTGCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACCTGGAAGGAGCAGAGTaGCTTCCTCATCAGATGGGG +
Preference number: 4 (lower is better)
Translates to: SDVQNLPAAAPLLSPGANLEGAE*LPHQMG
Trigger: CCCCATCTGATGAGGAAGGCACTCTGCTCCTTCCAG...GTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR CCA 90 bp CAGGTACTGCAAGAAGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCAGATGGGGCTGGTCATaGAAAGGACAGTCAGTCAAA +
Preference number: 4 (lower is better)
Translates to: QVLQEEWSQGTAVQMCRTRWGWS*KGQSVK
Trigger: TTTGACTGACTGTCCTTTCCATGACCAGCCCCATCT...GGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCTTCTTGCAGTACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR CCA 90 bp TCAGATGTGCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACCTCATCAGATGGGGCTaGTCATGGAAAGGACAGTCA +
Preference number: 4 (lower is better)
Translates to: SDVQNLPAAAPLLSPGANLIRWG*SWKGQS
Trigger: TGACTGTCCTTTCCATGACCAGCCCCATCTGATGAG...GTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR TCA 90 bp TGTGCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACACACTAGGCATTTTTGCAGCTaGATTTTGTCAGGGAGTGTG +
Preference number: 4 (lower is better)
Translates to: CAEPACSSSFTVSWCKHTRHFCS*ILSGSV
Trigger: CACACTCCCTGACAAAATTCAGCTGCAAAAATGCCT...AGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR CCA 90 bp GACAGCTGTTCAGATGTGCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTTCAGTCAAATTTGTCTaGGACTTGGTACATGTAGTT +
Preference number: 4 (lower is better)
Translates to: DSCSDVQNLPAAAPLLSPSVKFV*DLVHVV
Trigger: AACTACATGTACCAAGTCCCAGACAAATTTGACTGA...AGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS CCA 90 bp ACTCGCTCACAGCGAAGTCCAACGCTCGCCGCACGCCTTCCTCATTaGCATCTGCCTCCTCCGGGGCTCCCAACATTCGCGGGCCTTGTT +
Preference number: 5 (lower is better)
Translates to: TRSQRSPTLAARLPH*HLPPPGLPTFAGLV
Trigger: AACAAGGCCCGCGAATGTTGGGAGCCCCGGAGGAGGCAGATGCCAATGAGGAAGGCGTGCGGCGAGCGTTGGACTTCGCTGTGAGCGAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028938.7
ENSMUST00000144845.2
CDS-3UTR CAA 90 bp AGAGTGGAGCCAGGGGACAGCTGTTCAGATGTGCAGAACCTGCCTGCAGCAGCTCGCACGCCTTCCTCATaGGCATCTGCCTCCTCCGGG +
Preference number: 5 (lower is better)
Translates to: RVEPGDSCSDVQNLPAAARTPSS*ASASSG
Trigger: CCCGGAGGAGGCAGATGCCAATGAGGAAGGCGTGCG...AGCTGCTGCAGGCAGGTTCTGCACATCTGAACAGCTGTCCCCTGGCTCCACTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR CAA 90 bp TCAGATGTGCAGAACCTGCCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACTTCGCGGGCCTTGTTTaGGGGTCGCCGCCCAGGCCA +
Preference number: 5 (lower is better)
Translates to: SDVQNLPAAAPLLSPGANFAGLV*GSPPRP
Trigger: TGGCCTGGGCGGCGACCCCAAAACAAGGCCCGCGAA...GTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGGCAGGTTCTGCACATCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS-3UTR CAA 90 bp CCTGCAGCAGCTCCTTTACTGTCTCCTGGTGCAAACACACTGGCGGTGCCCTCCGACAGTCAGTCAAATTaGTCTGGGACTTGGTACATG +
Preference number: 5 (lower is better)
Translates to: PAAAPLLSPGANTLAVPSDSQSN*SGTWYM
Trigger: CATGTACCAAGTCCCAGACAAATTTGACTGACTGTC...GGAGGGCACCGCCAGTGTGTTTGCACCAGGAGACAGTAAAGGAGCTGCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS CCA 72 bp CTCCTCCGGGGCTCCCAACATTCGCGGGCCTTGTTTTaGGGTCGCCGCCCAGGCCACGGCCAGGACGGCCAG +
Preference number: 6 (lower is better)
Translates to: LLRGSQHSRALF*GRRPGHGQDGQ
Trigger: CTGGCCGTCCTGGCCGTGGCCTGGGCGGCGACCCCAAAACAAGGCCCGCGAATGTTGGGAGCCCCGGAGGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028938.7
ENSMUST00000144845.2
CDS GCA 72 bp GTCCAACGCTCGCCGCACGCCTTCCTCATTGGCATCTaGCTCCTCCGGGGCTCCCAACATTCGCGGGCCTTG +
Preference number: 6 (lower is better)
Translates to: VQRSPHAFLIGI*LLRGSQHSRAL
Trigger: CAAGGCCCGCGAATGTTGGGAGCCCCGGAGGAGGCAGATGCCAATGAGGAAGGCGTGCGGCGAGCGTTGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028938.7
ENSMUST00000144845.2
CDS CAA 72 bp ACAGCGAAGTCCAACGCTCGCCGCACGCCTTCCTCATaGGCATCTGCCTCCTCCGGGGCTCCCAACATTCGC +
Preference number: 6 (lower is better)
Translates to: TAKSNARRTPSS*ASASSGAPNIR
Trigger: GCGAATGTTGGGAGCCCCGGAGGAGGCAGATGCCAATGAGGAAGGCGTGCGGCGAGCGTTGGACTTCGCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028938.7
ENSMUST00000144845.2
CDS CAA 90 bp ACCACCTGTATGGCGCGGCTGTGGTACGCATCGTTGCTGCCCTTGTaGTACTCGCTCACAGCGAAGTCCAACGCTCGCCGCACGCCTTCC +
Preference number: 6 (lower is better)
Translates to: TTCMARLWYASLLPL*YSLTAKSNARRTPS
Trigger: GGAAGGCGTGCGGCGAGCGTTGGACTTCGCTGTGAGCGAGTACAACAAGGGCAGCAACGATGCGTACCACAGCCGCGCCATACAGGTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028938.7
ENSMUST00000144845.2
CDS CAA 72 bp ATGGCGCGGCTGTGGTACGCATCGTTGCTGCCCTTGTaGTACTCGCTCACAGCGAAGTCCAACGCTCGCCGC +
Preference number: 6 (lower is better)
Translates to: MARLWYASLLPL*YSLTAKSNARR
Trigger: GCGGCGAGCGTTGGACTTCGCTGTGAGCGAGTACAACAAGGGCAGCAACGATGCGTACCACAGCCGCGCCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028938.7
ENSMUST00000144845.2
CDS CCA 72 bp CAGCCACGAGCTGCTTACGAGCTCTCACCACCTGTATaGCGCGGCTGTGGTACGCATCGTTGCTGCCCTTGT +
Preference number: 6 (lower is better)
Translates to: QPRAAYELSPPV*RGCGTHRCCPC
Trigger: ACAAGGGCAGCAACGATGCGTACCACAGCCGCGCCATACAGGTGGTGAGAGCTCGTAAGCAGCTCGTGGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028938.7
ENSMUST00000144845.2
CDS CCA 72 bp GAGCAGAGTGCCTTCCTCATCAGATGGGGCTGGTCATaGAAAGGACAGTCAGTCAAATTTGTCTGGGACTTG +
Preference number: 6 (lower is better)
Translates to: EQSAFLIRWGWS*KGQSVKFVWDL
Trigger: CAAGTCCCAGACAAATTTGACTGACTGTCCTTTCCATGACCAGCCCCATCTGATGAGGAAGGCACTCTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7
CDS CCA 72 bp TGGAAGGAGCAGAGTGCCTTCCTCATCAGATGGGGCTaGTCATGGAAAGGACAGTCAGTCAAATTTGTCTGG +
Preference number: 6 (lower is better)
Translates to: WKEQSAFLIRWG*SWKGQSVKFVW
Trigger: CCAGACAAATTTGACTGACTGTCCTTTCCATGACCAGCCCCATCTGATGAGGAAGGCACTCTGCTCCTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028938.7