RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CST12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027443

Ensembl transcript IDs: ENSMUST00000028932.4, ENSMUST00000168443.8

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp AGTGATAATAATGATTATAGACGCTCCACTGAGTGTGACATCTGTAGCAGTCAATCCCAGCACAATGAGTaGCACGGACAGGACCGACTT +
Preference number: 4 (lower is better)
Translates to: SDNNDYRRSTECDICSSQSQHNE*HGQDRL
Trigger: AAGTCGGTCCTGTCCGTGGCACTCATTGTGCTGGGA...TTGACTGCTACAGATGTCACACTCAGTGGAGCGTCTATAATCATTATTATCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR CCA 90 bp ATGCACTTCACACAGAGTGATAATAATGATTATAGACGCTCCACTGAGTGTGACTACCTTTCTCTCTCCTaGACCTTCCTGCAATGGACA +
Preference number: 4 (lower is better)
Translates to: MHFTQSDNNDYRRSTECDYLSLS*TFLQWT
Trigger: TGTCCATTGCAGGAAGGTCCAGGAGAGAGAAAGGTA...GTCACACTCAGTGGAGCGTCTATAATCATTATTATCACTCTGTGTGAAGTGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR GCA 90 bp CACTTCACACAGAGTGATAATAATGATTATAGACGCTCCACTGAGTGTGACATCTCTCCTGGACCTTCCTaGAATGGACAATTGTCAATG +
Preference number: 4 (lower is better)
Translates to: HFTQSDNNDYRRSTECDISPGPS*NGQLSM
Trigger: CATTGACAATTGTCCATTGCAGGAAGGTCCAGGAGA...GATGTCACACTCAGTGGAGCGTCTATAATCATTATTATCACTCTGTGTGAAGTG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR GCA 90 bp ATGCACTTCACACAGAGTGATAATAATGATTATAGACGCTCCACTGAGTGTGACTCTCCACAATGTAAGTaGAGCGTACCTTTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: MHFTQSDNNDYRRSTECDSPQCK*SVPFSL
Trigger: GAGAGAGAAAGGTACGCTGCACTTACATTGTGGAGA...GTCACACTCAGTGGAGCGTCTATAATCATTATTATCACTCTGTGTGAAGTGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR CCA 90 bp ACACAGAGTGATAATAATGATTATAGACGCTCCACTGAGTGTGACATCTGTAGCCATGCTCCACAGAAATaGCAAACTCCTCTTCATTCT +
Preference number: 4 (lower is better)
Translates to: TQSDNNDYRRSTECDICSHAPQK*QTPLHS
Trigger: AGAATGAAGAGGAGTTTGCCATTTCTGTGGAGCATG...GCTACAGATGTCACACTCAGTGGAGCGTCTATAATCATTATTATCACTCTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR TCA 90 bp TTCACACAGAGTGATAATAATGATTATAGACGCTCCACTGAGTGTGACATCTGTTTGAAGCTGCAATCATaGATTCCCAGCACAATGAGT +
Preference number: 4 (lower is better)
Translates to: FTQSDNNDYRRSTECDICLKLQS*IPSTMS
Trigger: ACTCATTGTGCTGGGAATTCATGATTGCAGCTTCAA...ACAGATGTCACACTCAGTGGAGCGTCTATAATCATTATTATCACTCTGTGTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR TCA 90 bp ACACAGAGTGATAATAATGATTATAGACGCTCCACTGAGTGTGACATCTGTAGCCGATCTCTAGAAACTTaGAGCTGCAATCATGAATTC +
Preference number: 4 (lower is better)
Translates to: TQSDNNDYRRSTECDICSRSLET*SCNHEF
Trigger: GAATTCATGATTGCAGCTTCAAGTTTCTAGAGATCG...GCTACAGATGTCACACTCAGTGGAGCGTCTATAATCATTATTATCACTCTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR GCA 90 bp TCAATATTATGCACTTCACACAGAGTGATAATAATGATTATAGACGCTCCACTGAAGTGGAACACGACATaGTCCACAGAAATGGCAAAC +
Preference number: 4 (lower is better)
Translates to: SILCTSHRVIIMIIDAPLKWNTT*STEMAN
Trigger: GTTTGCCATTTCTGTGGAGCATGTCGTGTTCCACTT...CAGTGGAGCGTCTATAATCATTATTATCACTCTGTGTGAAGTGCATAATATTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS TCA 90 bp TCCTCTTCATTCTTGTCGATCTCTAGAAACTTGAAGCTGCAATCATaGATTCCCAGCACAATGAGTGCCACGGACAGGACCGACTTCCAC +
Preference number: 5 (lower is better)
Translates to: SSSFLSISRNLKLQS*IPSTMSATDRTDFH
Trigger: GTGGAAGTCGGTCCTGTCCGTGGCACTCATTGTGCTGGGAATTCATGATTGCAGCTTCAAGTTTCTAGAGATCGACAAGAATGAAGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8
CDS TCA 90 bp GGACTCTCAGGAACTTGTAGGCAAAATCGTCATCCTGGTTTTCGTTaGAGTGGAACACGACATGCTCCACAGAAATGGCAAACTCCTCTT +
Preference number: 5 (lower is better)
Translates to: GLSGTCRQNRHPGFR*SGTRHAPQKWQTPL
Trigger: AAGAGGAGTTTGCCATTTCTGTGGAGCATGTCGTGTTCCACTTCAACGAAAACCAGGATGACGATTTTGCCTACAAGTTCCTGAGAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8
CDS CCA 90 bp AATGTAAGTGCAGCGTACCTTTCTCTCTCCTGGACCTTCCTGCAATaGACAATTGTCAATGTCTTCATCATATTTCCCGCAAAGCGTACG +
Preference number: 5 (lower is better)
Translates to: NVSAAYLSLSWTFLQ*TIVNVFIIFPAKRT
Trigger: CGTACGCTTTGCGGGAAATATGATGAAGACATTGACAATTGTCCATTGCAGGAAGGTCCAGGAGAGAGAAAGGTACGCTGCACTTACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8
CDS CCA 90 bp TGCTTCAGTCTCCACAATGTAAGTGCAGCGTACCTTTCTCTCTCCTaGACCTTCCTGCAATGGACAATTGTCAATGTCTTCATCATATTT +
Preference number: 5 (lower is better)
Translates to: CFSLHNVSAAYLSLS*TFLQWTIVNVFIIF
Trigger: AAATATGATGAAGACATTGACAATTGTCCATTGCAGGAAGGTCCAGGAGAGAGAAAGGTACGCTGCACTTACATTGTGGAGACTGAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8
CDS-3UTR CAA 90 bp TCAATATTATGCACTTCACACAGAGTGATAATAATGATTATAGACGCTCCACTGAACTCCTCTTCATTCTaGTCGATCTCTAGAAACTTG +
Preference number: 5 (lower is better)
Translates to: SILCTSHRVIIMIIDAPLNSSSF*SISRNL
Trigger: CAAGTTTCTAGAGATCGACAAGAATGAAGAGGAGTT...CAGTGGAGCGTCTATAATCATTATTATCACTCTGTGTGAAGTGCATAATATTGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS-3UTR CAA 90 bp ATATTATGCACTTCACACAGAGTGATAATAATGATTATAGACGCTCCACTGAGTTCCTGCAATGGACAATaGTCAATGTCTTCATCATAT +
Preference number: 5 (lower is better)
Translates to: ILCTSHRVIIMIIDAPLSSCNGQ*SMSSSY
Trigger: ATATGATGAAGACATTGACAATTGTCCATTGCAGGA...ACTCAGTGGAGCGTCTATAATCATTATTATCACTCTGTGTGAAGTGCATAATAT
36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028932.4
CDS GCA 72 bp CTTGAAGCTGCAATCATGAATTCCCAGCACAATGAGTaGCACGGACAGGACCGACTTCCACAACATGGCTGT +
Preference number: 6 (lower is better)
Translates to: LEAAIMNSQHNE*HGQDRLPQHGC
Trigger: ACAGCCATGTTGTGGAAGTCGGTCCTGTCCGTGGCACTCATTGTGCTGGGAATTCATGATTGCAGCTTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168443.8
CDS CAA 90 bp GTGCAGCGTACCTTTCTCTCTCCTGGACCTTCCTGCAATGGACAATaGTCAATGTCTTCATCATATTTCCCGCAAAGCGTACGGCCCATC +
Preference number: 6 (lower is better)
Translates to: VQRTFLSPGPSCNGQ*SMSSSYFPQSVRPI
Trigger: GATGGGCCGTACGCTTTGCGGGAAATATGATGAAGACATTGACAATTGTCCATTGCAGGAAGGTCCAGGAGAGAGAAAGGTACGCTGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8
CDS TCA 72 bp TTCTTGTCGATCTCTAGAAACTTGAAGCTGCAATCATaGATTCCCAGCACAATGAGTGCCACGGACAGGACC +
Preference number: 6 (lower is better)
Translates to: FLSISRNLKLQS*IPSTMSATDRT
Trigger: GGTCCTGTCCGTGGCACTCATTGTGCTGGGAATTCATGATTGCAGCTTCAAGTTTCTAGAGATCGACAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8
CDS CCA 72 bp CTCCACAATGTAAGTGCAGCGTACCTTTCTCTCTCCTaGACCTTCCTGCAATGGACAATTGTCAATGTCTTC +
Preference number: 6 (lower is better)
Translates to: LHNVSAAYLSLS*TFLQWTIVNVF
Trigger: GAAGACATTGACAATTGTCCATTGCAGGAAGGTCCAGGAGAGAGAAAGGTACGCTGCACTTACATTGTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8
CDS GCA 72 bp ACAGGTGCTGTTCAAGATGGTGAACTTAGTAACCCATaGTTCAGTCTCCACAATGTAAGTGCAGCGTACCTT +
Preference number: 6 (lower is better)
Translates to: TGAVQDGELSNP*FSLHNVSAAYL
Trigger: AAGGTACGCTGCACTTACATTGTGGAGACTGAAGCATGGGTTACTAAGTTCACCATCTTGAACAGCACCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028932.4
ENSMUST00000168443.8