Pregenerated sensors for CST11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036958Ensembl transcript IDs: ENSMUST00000028934.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TTCATCTGTGACATACTCCAATGTCTCCTTCACAGAAGACTCCAATaGACTCACTTCTTCAATCCGTATAAATGTTTTCCTCTTTACTTG | + |
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Preference number: 5 (lower is better) Translates to: FICDILQCLLHRRLQ*THFFNPYKCFPLYL Trigger: CAAGTAAAGAGGAAAACATTTATACGGATTGAAGAAGTGAGTGCATTGGAGTCTTCTGTGAAGGAGACATTGGAGTATGTCACAGATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS TCA 72 bp | CTGTCTTCAAGCAGGTGGTCCGCTGCATTTCCACTGTaGTGTGATACTCCAGGTGACCTGTCACCTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LSSSRWSAAFPL*CDTPGDLSPAS Trigger: TGAAGCAGGTGACAGGTCACCTGGAGTATCACATCACAGTGGAAATGCAGCGGACCACCTGCTTGAAGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS CAA 90 bp | CAATGCACTCACTTCTTCAATCCGTATAAATGTTTTCCTCTTTACTaGGTAGCTGAAAGCCACCAGGGCCACCAGAATGGCCAACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: QCTHFFNPYKCFPLY*VAESHQGHQNGQQE Trigger: CTCCTGTTGGCCATTCTGGTGGCCCTGGTGGCTTTCAGCTACCAAGTAAAGAGGAAAACATTTATACGGATTGAAGAAGTGAGTGCATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS CAA 72 bp | CACTTCTTCAATCCGTATAAATGTTTTCCTCTTTACTaGGTAGCTGAAAGCCACCAGGGCCACCAGAATGGC | + |
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Preference number: 6 (lower is better) Translates to: HFFNPYKCFPLY*VAESHQGHQNG Trigger: GCCATTCTGGTGGCCCTGGTGGCTTTCAGCTACCAAGTAAAGAGGAAAACATTTATACGGATTGAAGAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS TCA 72 bp | TATTTTGAATACTTCAACCCAGGGAATGGCGTACACTaGGAAGTAGCACTGGATTTTCTTGTGAAGTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: YFEYFNPGNGVH*EVALDFLVKFP Trigger: GGGGAACTTCACAAGAAAATCCAGTGCTACTTCTCAGTGTACGCCATTCCCTGGGTTGAAGTATTCAAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS CAA 90 bp | AGGATTCGAAGGATCCTGAAGTTGTACAAGTCTTCACTTTTCTTGTaGTATTCATCTGTGACATACTCCAATGTCTCCTTCACAGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: RIRRILKLYKSSLFL*YSSVTYSNVSFTED Trigger: GTCTTCTGTGAAGGAGACATTGGAGTATGTCACAGATGAATACAACAAGAAAAGTGAAGACTTGTACAACTTCAGGATCCTTCGAATCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS GCA 72 bp | GACATACTCCAATGTCTCCTTCACAGAAGACTCCAATaGACTCACTTCTTCAATCCGTATAAATGTTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: DILQCLLHRRLQ*THFFNPYKCFP Trigger: AGGAAAACATTTATACGGATTGAAGAAGTGAGTGCATTGGAGTCTTCTGTGAAGGAGACATTGGAGTATGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS CAA 90 bp | TTCAGGATTCGAAGGATCCTGAAGTTGTACAAGTCTTCACTTTTCTaGTTGTATTCATCTGTGACATACTCCAATGTCTCCTTCACAGAA | + |
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Preference number: 6 (lower is better) Translates to: FRIRRILKLYKSSLF*LYSSVTYSNVSFTE Trigger: TTCTGTGAAGGAGACATTGGAGTATGTCACAGATGAATACAACAAGAAAAGTGAAGACTTGTACAACTTCAGGATCCTTCGAATCCTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS TCA 72 bp | TGTACAAGTCTTCACTTTTCTTGTTGTATTCATCTGTaGCATACTCCAATGTCTCCTTCACAGAAGACTCCA | + |
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Preference number: 6 (lower is better) Translates to: CTSLHFSCCIHL*HTPMSPSQKTP Trigger: TGGAGTCTTCTGTGAAGGAGACATTGGAGTATGTCACAGATGAATACAACAAGAAAAGTGAAGACTTGTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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| CDS CAA 72 bp | AGGATCCTGAAGTTGTACAAGTCTTCACTTTTCTTGTaGTATTCATCTGTGACATACTCCAATGTCTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: RILKLYKSSLFL*YSSVTYSNVSF Trigger: GAAGGAGACATTGGAGTATGTCACAGATGAATACAACAAGAAAAGTGAAGACTTGTACAACTTCAGGATCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028934.3 |
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