Pregenerated sensors for CST10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033156Ensembl transcript IDs: ENSMUST00000047008.9, ENSMUST00000109938.8, ENSMUST00000109939.3
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGAACTGTCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTaGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCTCT | + |
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Preference number: 1 (lower is better) Translates to: GNCHLGVQGLSLLFS*CYHSQETTFGTKIS Trigger: AGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGACAGTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| 3UTR TCA 90 bp | TGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCTCTGTCTaGGGAAAGGAGAACTTAAGGATAAGATTGAGTAAAAGTAAGAGA | + |
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Preference number: 1 (lower is better) Translates to: CYHSQETTFGTKISV*GKENLRIRLSKSKR Trigger: TCTCTTACTTTTACTCAATCTTATCCTTAAGTTCTCCTTTCCTCAGACAGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| 3UTR-3UTR TCA 90 bp | TGTCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTACTAAGATCTCTGTCTaGGGAAAGGAGAACTTAAGG | + |
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Preference number: 2 (lower is better) Translates to: CHLGVQGLSLLFSWCYHSTKISV*GKENLR Trigger: CCTTAAGTTCTCCTTTCCTCAGACAGAGATCTTAGT...AGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| 3UTR CCA 72 bp | CACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTaGTGCTATCATTCTCAAGAGACAACCTTTGGGACT | + |
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Preference number: 3 (lower is better) Translates to: HLGVQGLSLLFS*CYHSQETTFGT Trigger: AGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| 3UTR GCA 72 bp | TTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTaGTATCATTCTCAAGAGACAACCTTTGGGACTAAG | + |
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Preference number: 3 (lower is better) Translates to: LGVQGLSLLFSW*YHSQETTFGTK Trigger: CTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| 3UTR TCA 72 bp | TCTCAAGAGACAACCTTTGGGACTAAGATCTCTGTCTaGGGAAAGGAGAACTTAAGGATAAGATTGAGTAAA | + |
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Preference number: 3 (lower is better) Translates to: SQETTFGTKISV*GKENLRIRLSK Trigger: TTTACTCAATCTTATCCTTAAGTTCTCCTTTCCTCAGACAGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| 3UTR CAA 72 bp | TCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTaGGTGCTATCATTCTCAAGAGACAACCTTTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SLRCAGPISTFL*VLSFSRDNLWD Trigger: GTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS-3UTR TCA 90 bp | CACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAATCTGGAAATTACAGATaGCCCTCTTCTGCTGATCTG | + |
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Preference number: 4 (lower is better) Translates to: HLGVQGLSLLFSWCYHSQSGNYR*PSSADL Trigger: CAGATCAGCAGAAGAGGGTCATCTGTAATTTCCAGA...TTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 |
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| CDS-3UTR GCA 90 bp | GCAAATAATGAACAGTGGGCCTTTGAAAAACAAGTAGATGAAAGGAACAAGGGATTACAGATGACCCTCTaGTGGCTGGCGCTCATCAGT | + |
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Preference number: 4 (lower is better) Translates to: ANNEQWAFEKQVDERNKGLQMTL*WLALIS Trigger: ACTGATGAGCGCCAGCCAGCAGAGGGTCATCTGTAA...TCCCTTGTTCCTTTCATCTACTTGTTTTTCAAAGGCCCACTGTTCATTATTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109939.3 |
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| CDS-3UTR TCA 90 bp | CACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGATCTGGCTGTTCATTaGAGGGACAATCAACCAAAT | + |
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Preference number: 4 (lower is better) Translates to: HLGVQGLSLLFSWCYHSQDLAVH*RDNQPN Trigger: ATTTGGTTGATTGTCCCTTCAATGAACAGCCAGATC...TTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 |
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| CDS-3UTR TCA 90 bp | GCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGATCTGGAAATTACAGATaGCCCTCTTCTGCTGATCTG | + |
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Preference number: 4 (lower is better) Translates to: AYLYFSLGAIILKRQPLGSGNYR*PSSADL Trigger: CAGATCAGCAGAAGAGGGTCATCTGTAATTTCCAGA...TCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 |
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| CDS-3UTR GCA 90 bp | GGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGAACTTTACCACTTTCTaGACCTCCTTATCCTTAGGG | + |
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Preference number: 4 (lower is better) Translates to: GLSLLFSWCYHSQETTFGNFTTF*TSLSLG Trigger: CCCTAAGGATAAGGAGGTGCAGAAAGTGGTAAAGTT...CCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS-3UTR GCA 90 bp | GCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGAAACTTTACCACTTTCTaGACCTCCTTATCCTTAGGG | + |
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Preference number: 4 (lower is better) Translates to: AYLYFSLGAIILKRQPLGNFTTF*TSLSLG Trigger: CCCTAAGGATAAGGAGGTGCAGAAAGTGGTAAAGTT...TCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| 3UTR CAA 72 bp | TTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTaGGGACTAAGATCTCTGTCTGAGGAAAGGAGAACT | + |
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Preference number: 4 (lower is better) Translates to: FSLGAIILKRQP*GLRSLSEERRT Trigger: AGTTCTCCTTTCCTCAGACAGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS-3UTR GCA 90 bp | CTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCAACTTTACCACTTTCTaGACCTCCTTATCCTTAGGG | + |
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Preference number: 4 (lower is better) Translates to: LLFSWCYHSQETTFGTKINFTTF*TSLSLG Trigger: CCCTAAGGATAAGGAGGTGCAGAAAGTGGTAAAGTT...GATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS-3UTR TCA 90 bp | TATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAGATCTGGCTGTTCATTaGAGGGACAATCAACCAAAT | + |
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Preference number: 4 (lower is better) Translates to: YLYFSLGAIILKRQPLGLDLAVH*RDNQPN Trigger: ATTTGGTTGATTGTCCCTTCAATGAACAGCCAGATC...TAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 |
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| CDS-3UTR CAA 90 bp | GGGAACTGTCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATTTTGTCATGGACATCTaGTTCAGCCAAGGTGCAACG | + |
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Preference number: 5 (lower is better) Translates to: GNCHLGVQGLSLLFSWCYFVMDI*FSQGAT Trigger: CGTTGCACCTTGGCTGAACAAGATGTCCATGACAAA...ATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGACAGTTCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS-3UTR CAA 90 bp | AGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACCCTAATACCACCTGCTaGGCTTCAGCATTAGTACTG | + |
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Preference number: 5 (lower is better) Translates to: RCAGPISTFLLVLSFSRDPNTTC*ASALVL Trigger: CAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGG...GTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS CCA 90 bp | GAAATTACAGATGACCCTCTGCTGGCTGGCGCTCATCAGTCGTATTaGCTTGCTAAGATACAGGTCATTGTCCATATCATTGTAGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: EITDDPLLAGAHQSY*LAKIQVIVHIIVGS Trigger: AGAACCTACAATGATATGGACAATGACCTGTATCTTAGCAAGCCAATACGACTGATGAGCGCCAGCCAGCAGAGGGTCATCTGTAATTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109939.3 |
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| CDS-3UTR CAA 90 bp | TGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACTTTGTCATGGACATCTaGTTCAGCCAAGGTGCAACG | + |
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Preference number: 5 (lower is better) Translates to: CAGPISTFLLVLSFSRDNFVMDI*FSQGAT Trigger: CGTTGCACCTTGGCTGAACAAGATGTCCATGACAAA...GTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS-3UTR CAA 90 bp | CTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTCCTAATACCACCTGCTaGGCTTCAGCATTAGTACTG | + |
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Preference number: 5 (lower is better) Translates to: LSLLFSWCYHSQETTFGTPNTTC*ASALVL Trigger: CAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGG...AGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS-3UTR CAA 90 bp | CTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCTCTCCTAATACCACCTGCTaGGCTTCAGCATTAGTACTG | + |
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Preference number: 5 (lower is better) Translates to: LFSWCYHSQETTFGTKISPNTTC*ASALVL Trigger: CAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGG...AGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS CAA 72 bp | GGGTCAGCTGGCTCCACTCCACCTAATACCACCTGCTaGGCTTCAGCATTAGTACTGGCTTCAGGGATCACA | + |
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Preference number: 6 (lower is better) Translates to: GSAGSTPPNTTC*ASALVLASGIT Trigger: TGTGATCCCTGAAGCCAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGGTGGAGTGGAGCCAGCTGACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS CAA 90 bp | TTATCCTTAGGGTCAGCTGGCTCCACTCCACCTAATACCACCTGCTaGGCTTCAGCATTAGTACTGGCTTCAGGGATCACAGCCAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: LSLGSAGSTPPNTTC*ASALVLASGITARV Trigger: GACCCTGGCTGTGATCCCTGAAGCCAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGGTGGAGTGGAGCCAGCTGACCCTAAGGATAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047008.9 ENSMUST00000109938.8 ENSMUST00000109939.3 |
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| CDS GCA 72 bp | GGTGCAACGTTGATCTGGAAATTACAGATGACCCTCTaGTGGCTGGCGCTCATCAGTCGTATTGGCTTGCTA | + |
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Preference number: 6 (lower is better) Translates to: GATLIWKLQMTL*WLALISRIGLL Trigger: TAGCAAGCCAATACGACTGATGAGCGCCAGCCAGCAGAGGGTCATCTGTAATTTCCAGATCAACGTTGCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109939.3 |
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| CDS CCA 72 bp | GATGACCCTCTGCTGGCTGGCGCTCATCAGTCGTATTaGCTTGCTAAGATACAGGTCATTGTCCATATCATT | + |
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Preference number: 6 (lower is better) Translates to: DDPLLAGAHQSY*LAKIQVIVHII Trigger: AATGATATGGACAATGACCTGTATCTTAGCAAGCCAATACGACTGATGAGCGCCAGCCAGCAGAGGGTCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109939.3 |
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| CDS CAA 72 bp | TTTGTCATGGACATCTTGTTCAGCCAAGGTGCAACGTaGATCTGGAAATTACAGATGACCCTCTGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: FVMDILFSQGAT*IWKLQMTLCWL Trigger: CAGCCAGCAGAGGGTCATCTGTAATTTCCAGATCAACGTTGCACCTTGGCTGAACAAGATGTCCATGACAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109939.3 |
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