RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CST10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033156

Ensembl transcript IDs: ENSMUST00000047008.9, ENSMUST00000109938.8, ENSMUST00000109939.3

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGAACTGTCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTaGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCTCT +
Preference number: 1 (lower is better)
Translates to: GNCHLGVQGLSLLFS*CYHSQETTFGTKIS
Trigger: AGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGACAGTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
3UTR TCA 90 bp TGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCTCTGTCTaGGGAAAGGAGAACTTAAGGATAAGATTGAGTAAAAGTAAGAGA +
Preference number: 1 (lower is better)
Translates to: CYHSQETTFGTKISV*GKENLRIRLSKSKR
Trigger: TCTCTTACTTTTACTCAATCTTATCCTTAAGTTCTCCTTTCCTCAGACAGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
3UTR-3UTR TCA 90 bp TGTCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTACTAAGATCTCTGTCTaGGGAAAGGAGAACTTAAGG +
Preference number: 2 (lower is better)
Translates to: CHLGVQGLSLLFSWCYHSTKISV*GKENLR
Trigger: CCTTAAGTTCTCCTTTCCTCAGACAGAGATCTTAGT...AGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
3UTR CCA 72 bp CACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTaGTGCTATCATTCTCAAGAGACAACCTTTGGGACT +
Preference number: 3 (lower is better)
Translates to: HLGVQGLSLLFS*CYHSQETTFGT
Trigger: AGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
3UTR GCA 72 bp TTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTaGTATCATTCTCAAGAGACAACCTTTGGGACTAAG +
Preference number: 3 (lower is better)
Translates to: LGVQGLSLLFSW*YHSQETTFGTK
Trigger: CTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
3UTR TCA 72 bp TCTCAAGAGACAACCTTTGGGACTAAGATCTCTGTCTaGGGAAAGGAGAACTTAAGGATAAGATTGAGTAAA +
Preference number: 3 (lower is better)
Translates to: SQETTFGTKISV*GKENLRIRLSK
Trigger: TTTACTCAATCTTATCCTTAAGTTCTCCTTTCCTCAGACAGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
3UTR CAA 72 bp TCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTaGGTGCTATCATTCTCAAGAGACAACCTTTGGGAC +
Preference number: 4 (lower is better)
Translates to: SLRCAGPISTFL*VLSFSRDNLWD
Trigger: GTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS-3UTR TCA 90 bp CACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAATCTGGAAATTACAGATaGCCCTCTTCTGCTGATCTG +
Preference number: 4 (lower is better)
Translates to: HLGVQGLSLLFSWCYHSQSGNYR*PSSADL
Trigger: CAGATCAGCAGAAGAGGGTCATCTGTAATTTCCAGA...TTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
CDS-3UTR GCA 90 bp GCAAATAATGAACAGTGGGCCTTTGAAAAACAAGTAGATGAAAGGAACAAGGGATTACAGATGACCCTCTaGTGGCTGGCGCTCATCAGT +
Preference number: 4 (lower is better)
Translates to: ANNEQWAFEKQVDERNKGLQMTL*WLALIS
Trigger: ACTGATGAGCGCCAGCCAGCAGAGGGTCATCTGTAA...TCCCTTGTTCCTTTCATCTACTTGTTTTTCAAAGGCCCACTGTTCATTATTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109939.3
CDS-3UTR TCA 90 bp CACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGATCTGGCTGTTCATTaGAGGGACAATCAACCAAAT +
Preference number: 4 (lower is better)
Translates to: HLGVQGLSLLFSWCYHSQDLAVH*RDNQPN
Trigger: ATTTGGTTGATTGTCCCTTCAATGAACAGCCAGATC...TTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
CDS-3UTR TCA 90 bp GCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGATCTGGAAATTACAGATaGCCCTCTTCTGCTGATCTG +
Preference number: 4 (lower is better)
Translates to: AYLYFSLGAIILKRQPLGSGNYR*PSSADL
Trigger: CAGATCAGCAGAAGAGGGTCATCTGTAATTTCCAGA...TCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
CDS-3UTR GCA 90 bp GGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGAACTTTACCACTTTCTaGACCTCCTTATCCTTAGGG +
Preference number: 4 (lower is better)
Translates to: GLSLLFSWCYHSQETTFGNFTTF*TSLSLG
Trigger: CCCTAAGGATAAGGAGGTGCAGAAAGTGGTAAAGTT...CCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS-3UTR GCA 90 bp GCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGAAACTTTACCACTTTCTaGACCTCCTTATCCTTAGGG +
Preference number: 4 (lower is better)
Translates to: AYLYFSLGAIILKRQPLGNFTTF*TSLSLG
Trigger: CCCTAAGGATAAGGAGGTGCAGAAAGTGGTAAAGTT...TCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
3UTR CAA 72 bp TTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTaGGGACTAAGATCTCTGTCTGAGGAAAGGAGAACT +
Preference number: 4 (lower is better)
Translates to: FSLGAIILKRQP*GLRSLSEERRT
Trigger: AGTTCTCCTTTCCTCAGACAGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS-3UTR GCA 90 bp CTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCAACTTTACCACTTTCTaGACCTCCTTATCCTTAGGG +
Preference number: 4 (lower is better)
Translates to: LLFSWCYHSQETTFGTKINFTTF*TSLSLG
Trigger: CCCTAAGGATAAGGAGGTGCAGAAAGTGGTAAAGTT...GATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS-3UTR TCA 90 bp TATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAGATCTGGCTGTTCATTaGAGGGACAATCAACCAAAT +
Preference number: 4 (lower is better)
Translates to: YLYFSLGAIILKRQPLGLDLAVH*RDNQPN
Trigger: ATTTGGTTGATTGTCCCTTCAATGAACAGCCAGATC...TAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
CDS-3UTR CAA 90 bp GGGAACTGTCACTTAGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATTTTGTCATGGACATCTaGTTCAGCCAAGGTGCAACG +
Preference number: 5 (lower is better)
Translates to: GNCHLGVQGLSLLFSWCYFVMDI*FSQGAT
Trigger: CGTTGCACCTTGGCTGAACAAGATGTCCATGACAAA...ATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCTAAGTGACAGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS-3UTR CAA 90 bp AGGTGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACCCTAATACCACCTGCTaGGCTTCAGCATTAGTACTG +
Preference number: 5 (lower is better)
Translates to: RCAGPISTFLLVLSFSRDPNTTC*ASALVL
Trigger: CAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGG...GTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS CCA 90 bp GAAATTACAGATGACCCTCTGCTGGCTGGCGCTCATCAGTCGTATTaGCTTGCTAAGATACAGGTCATTGTCCATATCATTGTAGGTTCT +
Preference number: 5 (lower is better)
Translates to: EITDDPLLAGAHQSY*LAKIQVIVHIIVGS
Trigger: AGAACCTACAATGATATGGACAATGACCTGTATCTTAGCAAGCCAATACGACTGATGAGCGCCAGCCAGCAGAGGGTCATCTGTAATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109939.3
CDS-3UTR CAA 90 bp TGTGCAGGGCCTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACTTTGTCATGGACATCTaGTTCAGCCAAGGTGCAACG +
Preference number: 5 (lower is better)
Translates to: CAGPISTFLLVLSFSRDNFVMDI*FSQGAT
Trigger: CGTTGCACCTTGGCTGAACAAGATGTCCATGACAAA...GTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAGGCCCTGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS-3UTR CAA 90 bp CTATCTCTACTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTCCTAATACCACCTGCTaGGCTTCAGCATTAGTACTG +
Preference number: 5 (lower is better)
Translates to: LSLLFSWCYHSQETTFGTPNTTC*ASALVL
Trigger: CAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGG...AGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAGTAGAGATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS-3UTR CAA 90 bp CTTTTCTCTTGGTGCTATCATTCTCAAGAGACAACCTTTGGGACTAAGATCTCTCCTAATACCACCTGCTaGGCTTCAGCATTAGTACTG +
Preference number: 5 (lower is better)
Translates to: LFSWCYHSQETTFGTKISPNTTC*ASALVL
Trigger: CAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGG...AGAGATCTTAGTCCCAAAGGTTGTCTCTTGAGAATGATAGCACCAAGAGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS CAA 72 bp GGGTCAGCTGGCTCCACTCCACCTAATACCACCTGCTaGGCTTCAGCATTAGTACTGGCTTCAGGGATCACA +
Preference number: 6 (lower is better)
Translates to: GSAGSTPPNTTC*ASALVLASGIT
Trigger: TGTGATCCCTGAAGCCAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGGTGGAGTGGAGCCAGCTGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS CAA 90 bp TTATCCTTAGGGTCAGCTGGCTCCACTCCACCTAATACCACCTGCTaGGCTTCAGCATTAGTACTGGCTTCAGGGATCACAGCCAGGGTC +
Preference number: 6 (lower is better)
Translates to: LSLGSAGSTPPNTTC*ASALVLASGITARV
Trigger: GACCCTGGCTGTGATCCCTGAAGCCAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGGTGGAGTGGAGCCAGCTGACCCTAAGGATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047008.9
ENSMUST00000109938.8
ENSMUST00000109939.3
CDS GCA 72 bp GGTGCAACGTTGATCTGGAAATTACAGATGACCCTCTaGTGGCTGGCGCTCATCAGTCGTATTGGCTTGCTA +
Preference number: 6 (lower is better)
Translates to: GATLIWKLQMTL*WLALISRIGLL
Trigger: TAGCAAGCCAATACGACTGATGAGCGCCAGCCAGCAGAGGGTCATCTGTAATTTCCAGATCAACGTTGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109939.3
CDS CCA 72 bp GATGACCCTCTGCTGGCTGGCGCTCATCAGTCGTATTaGCTTGCTAAGATACAGGTCATTGTCCATATCATT +
Preference number: 6 (lower is better)
Translates to: DDPLLAGAHQSY*LAKIQVIVHII
Trigger: AATGATATGGACAATGACCTGTATCTTAGCAAGCCAATACGACTGATGAGCGCCAGCCAGCAGAGGGTCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109939.3
CDS CAA 72 bp TTTGTCATGGACATCTTGTTCAGCCAAGGTGCAACGTaGATCTGGAAATTACAGATGACCCTCTGCTGGCTG +
Preference number: 6 (lower is better)
Translates to: FVMDILFSQGAT*IWKLQMTLCWL
Trigger: CAGCCAGCAGAGGGTCATCTGTAATTTCCAGATCAACGTTGCACCTTGGCTGAACAAGATGTCCATGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109939.3