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Pregenerated sensors for CSRP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020186

Ensembl transcript IDs: ENSMUST00000020403.7, ENSMUST00000220409.2

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGGGAGAGTGCAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCGGTaGTGCCCAGTGCCAAGTGCTGGCTGTTTCACAGTAGTGAGCGCC +
Preference number: 1 (lower is better)
Translates to: RESAALSVQPPQAAR*CPVPSAGCFTVVSA
Trigger: GGCGCTCACTACTGTGAAACAGCCAGCACTTGGCACTGGGCATCACCGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTGCACTCTCCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR GCA 90 bp GTCGGTCCAGCCCCCACAGGCAGCTCGGTGATGCCCAGTGCCAAGTaGTGGCTGTTTCACAGTAGTGAGCGCCATAAACGCCATCTGCAG +
Preference number: 1 (lower is better)
Translates to: VGPAPTGSSVMPSAK*WLFHSSERHKRHLQ
Trigger: CTGCAGATGGCGTTTATGGCGCTCACTACTGTGAAACAGCCAGCACTTGGCACTGGGCATCACCGAGCTGCCTGTGGGGGCTGGACCGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR GCA 90 bp AAATGTAAAAGAATGCTCTTAGACGCTAGTGAGTGGGCGGGAGAGTaGAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCGGTGATGCCC +
Preference number: 1 (lower is better)
Translates to: KCKRMLLDASEWAGE*SAVGPAPTGSSVMP
Trigger: GGGCATCACCGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTGCACTCTCCCGCCCACTCACTAGCGTCTAAGAGCATTCTTTTACATTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR CCA 90 bp GGTCCAGCCCCCACAGGCAGCTCGGTGATGCCCAGTGCCAAGTGCTaGCTGTTTCACAGTAGTGAGCGCCATAAACGCCATCTGCAGTTT +
Preference number: 1 (lower is better)
Translates to: GPAPTGSSVMPSAKC*LFHSSERHKRHLQF
Trigger: AAACTGCAGATGGCGTTTATGGCGCTCACTACTGTGAAACAGCCAGCACTTGGCACTGGGCATCACCGAGCTGCCTGTGGGGGCTGGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR CCA 90 bp CTACATAGGCAAGCGTTTTACCATTCGGCCAGATCCCCAGCCGTGTaGGACTTAACACACACAGTAGGAATGGAAGAATGTAATCACTGT +
Preference number: 1 (lower is better)
Translates to: LHRQAFYHSARSPAV*DLTHTVGMEECNHC
Trigger: ACAGTGATTACATTCTTCCATTCCTACTGTGTGTGTTAAGTCCCACACGGCTGGGGATCTGGCCGAATGGTAAAACGCTTGCCTATGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220409.2
3UTR-3UTR CCA 90 bp GGAGGAAGGAACCAGATAACTTCTCATCATCTAAAAATCACAACAGCTCCTCTGTTAGACGCTAGTGAGTaGGCGGGAGAGTGCAGCGCT +
Preference number: 2 (lower is better)
Translates to: GGRNQITSHHLKITTAPLLDASE*AGECSA
Trigger: AGCGCTGCACTCTCCCGCCCACTCACTAGCGTCTAA...CAGAGGAGCTGTTGTGATTTTTAGATGATGAGAAGTTATCTGGTTCCTTCCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR-3UTR GCA 90 bp TCTAAAAATCACAACAGCTCCTCTGAAAGGTTAATTAAGAGGTGGTACCCAAATCTCGGTGATGCCCAGTaGCAAGTGCTGGCTGTTTCA +
Preference number: 2 (lower is better)
Translates to: SKNHNSSSERLIKRWYPNLGDAQ*QVLAVS
Trigger: TGAAACAGCCAGCACTTGGCACTGGGCATCACCGAG...ATTTGGGTACCACCTCTTAATTAACCTTTCAGAGGAGCTGTTGTGATTTTTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR TCA 72 bp GCAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCGGTaGTGCCCAGTGCCAAGTGCTGGCTGTTTCACAGTA +
Preference number: 3 (lower is better)
Translates to: AALSVQPPQAAR*CPVPSAGCFTV
Trigger: TACTGTGAAACAGCCAGCACTTGGCACTGGGCATCACCGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR GCA 72 bp AGAATGCTCTTAGACGCTAGTGAGTGGGCGGGAGAGTaGAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCG +
Preference number: 3 (lower is better)
Translates to: RMLLDASEWAGE*SAVGPAPTGSS
Trigger: CGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTGCACTCTCCCGCCCACTCACTAGCGTCTAAGAGCATTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR CCA 72 bp TTCAAATGTAAAAGAATGCTCTTAGACGCTAGTGAGTaGGCGGGAGAGTGCAGCGCTGTCGGTCCAGCCCCC +
Preference number: 3 (lower is better)
Translates to: FKCKRMLLDASE*AGECSAVGPAP
Trigger: GGGGGCTGGACCGACAGCGCTGCACTCTCCCGCCCACTCACTAGCGTCTAAGAGCATTCTTTTACATTTGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
3UTR CCA 72 bp CAAGCGTTTTACCATTCGGCCAGATCCCCAGCCGTGTaGGACTTAACACACACAGTAGGAATGGAAGAATGT +
Preference number: 3 (lower is better)
Translates to: QAFYHSARSPAV*DLTHTVGMEEC
Trigger: ACATTCTTCCATTCCTACTGTGTGTGTTAAGTCCCACACGGCTGGGGATCTGGCCGAATGGTAAAACGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220409.2
3UTR-3UTR CAA 90 bp TCTAAAAATCACAACAGCTCCTCTGAAAGGTTAATTAAGAGGTGGTACCCAAATAACGCCATCTGCAGTTaGGTAATGGAGATTCTCTGT +
Preference number: 3 (lower is better)
Translates to: SKNHNSSSERLIKRWYPNNAICS*VMEILC
Trigger: ACAGAGAATCTCCATTACCAAACTGCAGATGGCGTT...ATTTGGGTACCACCTCTTAATTAACCTTTCAGAGGAGCTGTTGTGATTTTTAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
CDS-3UTR TCA 90 bp GTGAGTGGGCGGGAGAGTGCAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCGGGAGCACTCTCTGGCTTaGTGCCCAGTCTCTCACCGC +
Preference number: 4 (lower is better)
Translates to: VSGRESAALSVQPPQAAREHSLA*CPVSHR
Trigger: GCGGTGAGAGACTGGGCATCAAGCCAGAGAGTGCTC...CCGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTGCACTCTCCCGCCCACTCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
CDS-3UTR CCA 90 bp CAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCGGTGATGCCCAGTGCCAAGTGAGGAAGCAGCAGCGATaGAAGCTCCGCCCATCGCAC +
Preference number: 4 (lower is better)
Translates to: QRCRSSPHRQLGDAQCQVRKQQR*KLRPSH
Trigger: GTGCGATGGGCGGAGCTTCCATCGCTGCTGCTTCCT...CACTTGGCACTGGGCATCACCGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
CDS-3UTR GCA 90 bp GTGAGTGGGCGGGAGAGTGCAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCGGCGGAAACAGTTTTTGTaGCAGGGCTTCCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: VSGRESAALSVQPPQAARRKQFL*QGFPAP
Trigger: TGGAGCTGGGAAGCCCTGGCACAAAAACTGTTTCCG...CCGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTGCACTCTCCCGCCCACTCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
CDS-3UTR CCA 90 bp GGCGGGAGAGTGCAGCGCTGTCGGTCCAGCCCCCACAGGCAGCTCGGTGATGCCAGGTTGAGCACTCTCTaGCTTGATGCCCAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: GGRVQRCRSSPHRQLGDARLSTL*LDAQSL
Trigger: GAGAGACTGGGCATCAAGCCAGAGAGTGCTCAACCT...GGCATCACCGAGCTGCCTGTGGGGGCTGGACCGACAGCGCTGCACTCTCCCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
CDS-3UTR CCA 90 bp TTCGGCCAGATCCCCAGCCGTGTGGGACTTAACACACACAGTAGGAATGGAAGAAGGAAGCAGCAGCGATaGAAGCTCCGCCCATCGCAC +
Preference number: 4 (lower is better)
Translates to: FGQIPSRVGLNTHSRNGRRKQQR*KLRPSH
Trigger: GTGCGATGGGCGGAGCTTCCATCGCTGCTGCTTCCT...TCTTCCATTCCTACTGTGTGTGTTAAGTCCCACACGGCTGGGGATCTGGCCGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220409.2
CDS-3UTR CCA 90 bp TTCGGCCAGATCCCCAGCCGTGTGGGACTTAACACACACAGTAGGAATGGAAGAAGGTTGAGCACTCTCTaGCTTGATGCCCAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: FGQIPSRVGLNTHSRNGRRLSTL*LDAQSL
Trigger: GAGAGACTGGGCATCAAGCCAGAGAGTGCTCAACCT...TCTTCCATTCCTACTGTGTGTGTTAAGTCCCACACGGCTGGGGATCTGGCCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220409.2
CDS-3UTR TCA 90 bp AGATCCCCAGCCGTGTGGGACTTAACACACACAGTAGGAATGGAAGAATGTAATGAGCACTCTCTGGCTTaGTGCCCAGTCTCTCACCGC +
Preference number: 4 (lower is better)
Translates to: RSPAVWDLTHTVGMEECNEHSLA*CPVSHR
Trigger: GCGGTGAGAGACTGGGCATCAAGCCAGAGAGTGCTC...ATTACATTCTTCCATTCCTACTGTGTGTGTTAAGTCCCACACGGCTGGGGATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220409.2
CDS-3UTR GCA 90 bp TTCGGCCAGATCCCCAGCCGTGTGGGACTTAACACACACAGTAGGAATGGAAGATTTTCCTGCAAACCATaGACAGGAAGCAGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: FGQIPSRVGLNTHSRNGRFSCKP*TGSSSD
Trigger: ATCGCTGCTGCTTCCTGTGCATGGTTTGCAGGAAAA...TCTTCCATTCCTACTGTGTGTGTTAAGTCCCACACGGCTGGGGATCTGGCCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220409.2
3UTR CAA 72 bp TTCACAGTAGTGAGCGCCATAAACGCCATCTGCAGTTaGGTAATGGAGATTCTCTGTCGTGCTTACTGGGTT +
Preference number: 4 (lower is better)
Translates to: FTVVSAINAICS*VMEILCRAYWV
Trigger: AACCCAGTAAGCACGACAGAGAATCTCCATTACCAAACTGCAGATGGCGTTTATGGCGCTCACTACTGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
CDS-3UTR GCA 90 bp AGATCCCCAGCCGTGTGGGACTTAACACACACAGTAGGAATGGAAGAATGTAATTGTCTAAATTTTTCCTaGAAACCATGCACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: RSPAVWDLTHTVGMEECNCLNFS*KPCTGS
Trigger: GCTTCCTGTGCATGGTTTGCAGGAAAAATTTAGACA...ATTACATTCTTCCATTCCTACTGTGTGTGTTAAGTCCCACACGGCTGGGGATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220409.2
CDS-3UTR GCA 90 bp TTCTCATCATCTAAAAATCACAACAGCTCCTCTGAAAGGTTAATTAAGAGGTGGTTTTCCTGCAAACCATaGACAGGAAGCAGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: FSSSKNHNSSSERLIKRWFSCKP*TGSSSD
Trigger: ATCGCTGCTGCTTCCTGTGCATGGTTTGCAGGAAAA...CCACCTCTTAATTAACCTTTCAGAGGAGCTGTTGTGATTTTTAGATGATGAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7
CDS-3UTR GCA 90 bp TTCTCATCATCTAAAAATCACAACAGCTCCTCTGAAAGGTTAATTAAGAGGTGGTGTCTAAATTTTTCCTaGAAACCATGCACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: FSSSKNHNSSSERLIKRWCLNFS*KPCTGS
Trigger: GCTTCCTGTGCATGGTTTGCAGGAAAAATTTAGACA...CCACCTCTTAATTAACCTTTCAGAGGAGCTGTTGTGATTTTTAGATGATGAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020403.7