Pregenerated sensors for CSPRS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062783Ensembl transcript IDs: ENSMUST00000078827.3
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATGCCTATAGCTACTCAGCCCACGCAACCTCCACAGTCCATGGTTaGTGGGTCTGTCTTTCACACCAATCAATGGGGTCCCTGACTTCT | + |
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Preference number: 1 (lower is better) Translates to: NAYSYSAHATSTVHG*WVCLSHQSMGSLTS Trigger: AGAAGTCAGGGACCCCATTGATTGGTGTGAAAGACAGACCCAGCAACCATGGACTGTGGAGGTTGCGTGGGCTGAGTAGCTATAGGCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR GCA 90 bp | AAAGCACTAGCTCGTCTTAGTGAGGTACAGCAGAGAAGTCTGCAGTaGTCTCAAAACCAAATCAAGGCAACAGTTTACACAGATCAAGTC | + |
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Preference number: 1 (lower is better) Translates to: KALARLSEVQQRSLQ*SQNQIKATVYTDQV Trigger: GACTTGATCTGTGTAAACTGTTGCCTTGATTTGGTTTTGAGAGCACTGCAGACTTCTCTGCTGTACCTCACTAAGACGAGCTAGTGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR TCA 90 bp | AAGTGTTTGCAAATGGATCAAGCTGCAACTGATGATTCCTGTAAATaGACTGCTGATCTCCTGATAACACAAATGGGATTTGCTCCAAAG | + |
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Preference number: 1 (lower is better) Translates to: KCLQMDQAATDDSCK*TADLLITQMGFAPK Trigger: CTTTGGAGCAAATCCCATTTGTGTTATCAGGAGATCAGCAGTTCATTTACAGGAATCATCAGTTGCAGCTTGATCCATTTGCAAACACTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR GCA 90 bp | TGCATAGCTAGCTCTGCAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCATTCCACAGTCCATGGTTaGTGGGTCTGTCTTTCACAC | + |
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Preference number: 2 (lower is better) Translates to: CIASSAKKASWSPVFSDHSTVHG*WVCLSH Trigger: GTGTGAAAGACAGACCCAGCAACCATGGACTGTGGA...ATGATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR CCA 90 bp | GCTTGCATAGCTAGCTCTGCAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATACCTCTGGTGGGTGGTaGGATAGAAGGAAGGTTAAA | + |
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Preference number: 2 (lower is better) Translates to: ACIASSAKKASWSPVFSDTSGGW*DRRKVK Trigger: TTTAACCTTCCTTCTATCCCACCACCCACCAGAGGT...ATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR CAA 90 bp | CAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCATTGTTTCTTaGAGAGAGGCAAGGCAAAGAACTTCTGCTGATGTCCCTGGTAGT | + |
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Preference number: 2 (lower is better) Translates to: QRRLLGHQSSVIIVS*REARQRTSADVPGS Trigger: ACTACCAGGGACATCAGCAGAAGTTCTTTGCCTTGCCTCTCTCAAAGAAACAATGATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR TCA 90 bp | GCTTGCATAGCTAGCTCTGCAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCCGATTGATAGTTCGTaGAGTGTTTGCAAATGGATC | + |
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Preference number: 2 (lower is better) Translates to: ACIASSAKKASWSPVFSDPIDSS*SVCKWI Trigger: GATCCATTTGCAAACACTTCACGAACTATCAATCGG...ATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCATTGTTTCTTTGAGAGAGGCAACAGTCCATGGTTGCTaGGTCTGTCTTTCACACCAA | + |
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Preference number: 2 (lower is better) Translates to: RRLLGHQSSVIIVSLREATVHGC*VCLSHQ Trigger: TTGGTGTGAAAGACAGACCCAGCAACCATGGACTGT...TGCCTCTCTCAAAGAAACAATGATCACTGAAGACTGGTGACCAAGAAGCCTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR GCA 90 bp | GCTTGCATAGCTAGCTCTGCAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATGATTCCTGTTCTTTGTaGTATGGCTACAGTAGATCA | + |
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Preference number: 2 (lower is better) Translates to: ACIASSAKKASWSPVFSDDSCSL*YGYSRS Trigger: TGATCTACTGTAGCCATAGCACAAAGAACAGGAATC...ATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR GCA 90 bp | ATCAAAGGTGGTGTGCCTGATGCTTTTTGCCACTTCTGCAGACTCGAGCCAATTGGTAACTTCCCACACTaGCAAATAAGTAACACTAAG | + |
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Preference number: 2 (lower is better) Translates to: IKGGVPDAFCHFCRLEPIGNFPH*QISNTK Trigger: CTTAGTGTTACTTATTTGGCAGTGTGGGAAGTTACC...AATTGGCTCGAGTCTGCAGAAGTGGCAAAAAGCATCAGGCACACCACCTTTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR CCA 90 bp | AGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCATTGTTTCTTTGAGAGAGGCAATGACACACAGAAGATaGAAGGAGGCAGAAGACATT | + |
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Preference number: 2 (lower is better) Translates to: RRLLGHQSSVIIVSLREAMTHRR*KEAEDI Trigger: AATGTCTTCTGCCTCCTTCCATCTTCTGTGTGTCAT...TGCCTCTCTCAAAGAAACAATGATCACTGAAGACTGGTGACCAAGAAGCCTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR TCA 90 bp | CCATATCCTAACAACTCTTCTTTTCTCCTACCTCTGGTGGGTGGTGGGATAGAAATTGTTGTGAGGATATaGTGTAGTGTAAATGGCTTG | + |
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Preference number: 2 (lower is better) Translates to: PYPNNSSFLLPLVGGGIEIVVRI*CSVNGL Trigger: CAAGCCATTTACACTACATCATATCCTCACAACAAT...TTCTATCCCACCACCCACCAGAGGTAGGAGAAAAGAAGAGTTGTTAGGATATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR TCA 90 bp | AGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCATTGTTTCTTTGAGAGAGGCAGATGATTCCTGTAAATaGACTGCTGATCTCCTGATA | + |
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Preference number: 2 (lower is better) Translates to: RRLLGHQSSVIIVSLREADDSCK*TADLLI Trigger: TATCAGGAGATCAGCAGTTCATTTACAGGAATCATC...TGCCTCTCTCAAAGAAACAATGATCACTGAAGACTGGTGACCAAGAAGCCTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR GCA 90 bp | AAGAACTACATTTCCCAGATGCCTTTGCTTTTAGGGTCTCATTGGACAGTTAGGCAGAGAAGTCTGCAGTaGTCTCAAAACCAAATCAAG | + |
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Preference number: 2 (lower is better) Translates to: KNYISQMPLLLGSHWTVRQRSLQ*SQNQIK Trigger: CTTGATTTGGTTTTGAGAGCACTGCAGACTTCTCTG...CCTAACTGTCCAATGAGACCCTAAAAGCAAAGGCATCTGGGAAATGTAGTTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR CAA 90 bp | CACTGCCAAATAAGTAACACTAAGAACTACATTTCCCAGATGCCTTaGCTTTTAGGGTCTCATTGGACAGTTAGGTTCCACCAATTACAG | + |
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Preference number: 2 (lower is better) Translates to: HCQISNTKNYISQMP*LLGSHWTVRFHQLQ Trigger: CTGTAATTGGTGGAACCTAACTGTCCAATGAGACCCTAAAAGCAAAGGCATCTGGGAAATGTAGTTCTTAGTGTTACTTATTTGGCAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR GCA 72 bp | AGCTACTCAGCCCACGCAACCTCCACAGTCCATGGTTaGTGGGTCTGTCTTTCACACCAATCAATGGGGTCC | + |
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Preference number: 3 (lower is better) Translates to: SYSAHATSTVHG*WVCLSHQSMGS Trigger: GGACCCCATTGATTGGTGTGAAAGACAGACCCAGCAACCATGGACTGTGGAGGTTGCGTGGGCTGAGTAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR CCA 72 bp | TACTCAGCCCACGCAACCTCCACAGTCCATGGTTGCTaGGTCTGTCTTTCACACCAATCAATGGGGTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: YSAHATSTVHGC*VCLSHQSMGSL Trigger: CAGGGACCCCATTGATTGGTGTGAAAGACAGACCCAGCAACCATGGACTGTGGAGGTTGCGTGGGCTGAGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR GCA 72 bp | ATCAAAGGTGGTGTGCCTGATGCTTTTTGCCACTTCTaGAGACTCGAGCCAATTGGCAGAATGATGGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: IKGGVPDAFCHF*RLEPIGRMMAV Trigger: AACTGCCATCATTCTGCCAATTGGCTCGAGTCTGCAGAAGTGGCAAAAAGCATCAGGCACACCACCTTTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR CAA 90 bp | AAGAACTACATTTCCCAGATGCCTTTGCTTTTAGGGTCTCATTGGACAGTTAGGCTCCACAGTCCATGGTaGCTGGGTCTGTCTTTCACA | + |
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Preference number: 3 (lower is better) Translates to: KNYISQMPLLLGSHWTVRLHSPW*LGLSFT Trigger: TGTGAAAGACAGACCCAGCAACCATGGACTGTGGAG...CCTAACTGTCCAATGAGACCCTAAAAGCAAAGGCATCTGGGAAATGTAGTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR CAA 90 bp | GCTTGCATAGCTAGCTCTGCAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATATTTCCCAGATGCCTTaGCTTTTAGGGTCTCATTGG | + |
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Preference number: 3 (lower is better) Translates to: ACIASSAKKASWSPVFSDISQMP*LLGSHW Trigger: CCAATGAGACCCTAAAAGCAAAGGCATCTGGGAAAT...ATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR CAA 90 bp | ATCAAAGGTGGTGTGCCTGATGCTTTTTGCCACTTCTGCAGACTCGAGCCAATTCAAAGAGCTGAATTTTaGTTTAAGCCAGCCCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: IKGGVPDAFCHFCRLEPIQRAEF*FKPAPS Trigger: AGAAGGGGCTGGCTTAAACAAAAATTCAGCTCTTTG...AATTGGCTCGAGTCTGCAGAAGTGGCAAAAAGCATCAGGCACACCACCTTTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR-3UTR CAA 90 bp | ATCAAAGGTGGTGTGCCTGATGCTTTTTGCCACTTCTGCAGACTCGAGCCAATTGCAGAAGACATTGTGTaGCTGTTTCTCCTAACAAAC | + |
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Preference number: 3 (lower is better) Translates to: IKGGVPDAFCHFCRLEPIAEDIV*LFLLTN Trigger: GTTTGTTAGGAGAAACAGCAACACAATGTCTTCTGC...AATTGGCTCGAGTCTGCAGAAGTGGCAAAAAGCATCAGGCACACCACCTTTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR TCA 72 bp | TGGACAGTTAGGTTCCACCAATTACAGGCTTCTTTATaGCACACAGAAGATGGAAGGAGGCAGAAGACATTG | + |
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Preference number: 3 (lower is better) Translates to: WTVRFHQLQASL*HTEDGRRQKTL Trigger: CAATGTCTTCTGCCTCCTTCCATCTTCTGTGTGTCATAAAGAAGCCTGTAATTGGTGGAACCTAACTGTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR CCA 72 bp | CTTGCTTGCATAGCTAGCTCTGCAAAGAAGGCTTCTTaGTCACCAGTCTTCAGTGATCATTGTTTCTTTGAG | + |
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Preference number: 3 (lower is better) Translates to: LACIASSAKKAS*SPVFSDHCFFE Trigger: CTCAAAGAAACAATGATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCAAGCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR GCA 72 bp | GATTTGCTCCAAAGAACAGTTTCTAAACAGGTCCACTaGCCCCATATCCTAACAACTCTTCTTTTCTCCTAC | + |
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Preference number: 3 (lower is better) Translates to: DLLQRTVSKQVH*PHILTTLLFSY Trigger: GTAGGAGAAAAGAAGAGTTGTTAGGATATGGGGGCAGTGGACCTGTTTAGAAACTGTTCTTTGGAGCAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR TCA 72 bp | ATGTTTGCTATCCCAACACTACCGATTGATAGTTCGTaGAGTGTTTGCAAATGGATCAAGCTGCAACTGATG | + |
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Preference number: 3 (lower is better) Translates to: MFAIPTLPIDSS*SVCKWIKLQLM Trigger: CATCAGTTGCAGCTTGATCCATTTGCAAACACTTCACGAACTATCAATCGGTAGTGTTGGGATAGCAAACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR CCA 72 bp | TACATTTCCCAGATGCCTTTGCTTTTAGGGTCTCATTaGACAGTTAGGTTCCACCAATTACAGGCTTCTTTA | + |
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Preference number: 3 (lower is better) Translates to: YISQMPLLLGSH*TVRFHQLQASL Trigger: TAAAGAAGCCTGTAATTGGTGGAACCTAACTGTCCAATGAGACCCTAAAAGCAAAGGCATCTGGGAAATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR TCA 72 bp | CAAATGGATCAAGCTGCAACTGATGATTCCTGTAAATaGACTGCTGATCTCCTGATAACACAAATGGGATTT | + |
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Preference number: 3 (lower is better) Translates to: QMDQAATDDSCK*TADLLITQMGF Trigger: AAATCCCATTTGTGTTATCAGGAGATCAGCAGTTCATTTACAGGAATCATCAGTTGCAGCTTGATCCATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR TCA 90 bp | GCTTGCATAGCTAGCTCTGCAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATGAGATACAAAGCAGGTaGTGGCAGAGGAGGACCAGC | + |
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Preference number: 4 (lower is better) Translates to: ACIASSAKKASWSPVFSDEIQSR*WQRRTS Trigger: GCTGGTCCTCCTCTGCCATCACCTGCTTTGTATCTC...ATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR TCA 90 bp | GCTTGCATAGCTAGCTCTGCAAAGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCCGGGCCTTGATGTTTaGCTTGTTAAAATGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ACIASSAKKASWSPVFSDPGLDV*LVKMAS Trigger: GCTGGCCATTTTAACAAGTCAAACATCAAGGCCCGG...ATCACTGAAGACTGGTGACCAAGAAGCCTTCTTTGCAGAGCTAGCTATGCAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR GCA 90 bp | CCAATGCCTATAGCTACTCAGCCCACGCAACCTCCACAGTCCATGGTTGCTGGGAGGGTTGAAACACTGTaGAAAAGCAAAGATACCAAA | + |
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Preference number: 4 (lower is better) Translates to: PMPIATQPTQPPQSMVAGRVETL*KSKDTK Trigger: TTTGGTATCTTTGCTTTTGCACAGTGTTTCAACCCT...CCCAGCAACCATGGACTGTGGAGGTTGCGTGGGCTGAGTAGCTATAGGCATTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR GCA 90 bp | ATCAAAGGTGGTGTGCCTGATGCTTTTTGCCACTTCTGCAGACTCGAGCCAATTGGGTACAGTTTGCTCTaGAGATCTCTGTTGTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: IKGGVPDAFCHFCRLEPIGYSLL*RSLLWS Trigger: GCTCCACAACAGAGATCTGCAGAGCAAACTGTACCC...AATTGGCTCGAGTCTGCAGAAGTGGCAAAAAGCATCAGGCACACCACCTTTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR TCA 90 bp | CGTGATTCCTGTTCTTTGTGCTATGGCTACAGTAGATCAGGCCATCAGAAATGCGGGAAAACATGCCAATaGCTCTGGCAGGCATACCAT | + |
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Preference number: 4 (lower is better) Translates to: RDSCSLCYGYSRSGHQKCGKTCQ*LWQAYH Trigger: ATGGTATGCCTGCCAGAGTCATTGGCATGTTTTCCC...GCATTTCTGATGGCCTGATCTACTGTAGCCATAGCACAAAGAACAGGAATCACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR GCA 90 bp | CCATATCCTAACAACTCTTCTTTTCTCCTACCTCTGGTGGGTGGTGGGATAGAATTAAAATGGCCAGCCTaGTTCCCTTCTCGGTATATC | + |
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Preference number: 4 (lower is better) Translates to: PYPNNSSFLLPLVGGGIELKWPA*FPSRYI Trigger: GATATACCGAGAAGGGAAGCAGGCTGGCCATTTTAA...TTCTATCCCACCACCCACCAGAGGTAGGAGAAAAGAAGAGTTGTTAGGATATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR GCA 90 bp | CATTCCACTGCTGATTCATGTTTGCTATCCCAACACTACCGATTGATAGTTCGTACCTCTTTCCTCAGCTaGAGACTCTGTGACACTATT | + |
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Preference number: 4 (lower is better) Translates to: HSTADSCLLSQHYRLIVRTSFLS*RLCDTI Trigger: AATAGTGTCACAGAGTCTGCAGCTGAGGAAAGAGGT...ACGAACTATCAATCGGTAGTGTTGGGATAGCAAACATGAATCAGCAGTGGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR CCA 90 bp | AGAAGGCTTCTTGGTCACCAGTCTTCAGTGATCATTGTTTCTTTGAGAGAGGCATTTGACTTGTTAAAATaGCCAGCCTGCTTCCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: RRLLGHQSSVIIVSLREAFDLLK*PACFPS Trigger: AGAAGGGAAGCAGGCTGGCCATTTTAACAAGTCAAA...TGCCTCTCTCAAAGAAACAATGATCACTGAAGACTGGTGACCAAGAAGCCTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR CAA 72 bp | ATGTCTCTGCTAGGTCATTCCACTGCTGATTCATGTTaGCTATCCCAACACTACCGATTGATAGTTCGTGAA | + |
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Preference number: 4 (lower is better) Translates to: MSLLGHSTADSC*LSQHYRLIVRE Trigger: TTCACGAACTATCAATCGGTAGTGTTGGGATAGCAAACATGAATCAGCAGTGGAATGACCTAGCAGAGACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| 3UTR CAA 72 bp | ACACACAGAAGATGGAAGGAGGCAGAAGACATTGTGTaGCTGTTTCTCCTAACAAACAAAGTTGTCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: THRRWKEAEDIV*LFLLTNKVVKM Trigger: CATCTTGACAACTTTGTTTGTTAGGAGAAACAGCAACACAATGTCTTCTGCCTCCTTCCATCTTCTGTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR CCA 90 bp | AGATGGAAGGAGGCAGAAGACATTGTGTTGCTGTTTCTCCTAACAAACAAAGTTAGAATCCACAAAGGATaGAGAGTTCAATGGATAACA | + |
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Preference number: 4 (lower is better) Translates to: RWKEAEDIVLLFLLTNKVRIHKG*RVQWIT Trigger: TGTTATCCATTGAACTCTCCATCCTTTGTGGATTCT...AACTTTGTTTGTTAGGAGAAACAGCAACACAATGTCTTCTGCCTCCTTCCATCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR CAA 90 bp | CCAATGCCTATAGCTACTCAGCCCACGCAACCTCCACAGTCCATGGTTGCTGGGAGCCAAGGGTACAGTTaGCTCTGCAGATCTCTGTTG | + |
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Preference number: 5 (lower is better) Translates to: PMPIATQPTQPPQSMVAGSQGYS*LCRSLL Trigger: CAACAGAGATCTGCAGAGCAAACTGTACCCTTGGCT...CCCAGCAACCATGGACTGTGGAGGTTGCGTGGGCTGAGTAGCTATAGGCATTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR CAA 90 bp | CGTGATTCCTGTTCTTTGTGCTATGGCTACAGTAGATCAGGCCATCAGAAATGCCAGAGGCCTTCACGGTaGCCTCTAGTCTCAGCCAGT | + |
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Preference number: 5 (lower is better) Translates to: RDSCSLCYGYSRSGHQKCQRPSR*PLVSAS Trigger: ACTGGCTGAGACTAGAGGCAACCGTGAAGGCCTCTG...GCATTTCTGATGGCCTGATCTACTGTAGCCATAGCACAAAGAACAGGAATCACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR CAA 90 bp | AGATGGAAGGAGGCAGAAGACATTGTGTTGCTGTTTCTCCTAACAAACAAAGTTAGCAGGAGGGGGCTGTaGGCCAGTAAGGCCCGCATT | + |
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Preference number: 5 (lower is better) Translates to: RWKEAEDIVLLFLLTNKVSRRGL*ASKARI Trigger: AATGCGGGCCTTACTGGCCAACAGCCCCCTCCTGCT...AACTTTGTTTGTTAGGAGAAACAGCAACACAATGTCTTCTGCCTCCTTCCATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS TCA 90 bp | GTTTGCTCTGCAGATCTCTGTTGTGGAGCCCATAGACCAAAGGGTTaGAACACTGTGCAAAAGCAAAGATACCAAAAAGGGCCAGATTTA | + |
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Preference number: 5 (lower is better) Translates to: VCSADLCCGAHRPKG*NTVQKQRYQKGPDL Trigger: TAAATCTGGCCCTTTTTGGTATCTTTGCTTTTGCACAGTGTTTCAACCCTTTGGTCTATGGGCTCCACAACAGAGATCTGCAGAGCAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR CAA 90 bp | AAGAACTACATTTCCCAGATGCCTTTGCTTTTAGGGTCTCATTGGACAGTTAGGAGCCAGTCAGATACGTaGCAATGCTCAGAAGATGAG | + |
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Preference number: 5 (lower is better) Translates to: KNYISQMPLLLGSHWTVRSQSDT*QCSEDE Trigger: CTCATCTTCTGAGCATTGCAACGTATCTGACTGGCT...CCTAACTGTCCAATGAGACCCTAAAAGCAAAGGCATCTGGGAAATGTAGTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS-3UTR CAA 90 bp | CTTTATGACACACAGAAGATGGAAGGAGGCAGAAGACATTGTGTTGCTGTTTCTGCCTTGATGTTTGACTaGTTAAAATGGCCAGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: LYDTQKMEGGRRHCVAVSALMFD*LKWPAC Trigger: GCAGGCTGGCCATTTTAACAAGTCAAACATCAAGGC...AGAAACAGCAACACAATGTCTTCTGCCTCCTTCCATCTTCTGTGTGTCATAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS TCA 90 bp | ATGATTATCAGGGTAGGTATCACATGTAAGCTTATCTGCAGTAGATaGACAAGGACAGTTCTCCGGGCCTTGATGTTTGACTTGTTAAAA | + |
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Preference number: 5 (lower is better) Translates to: MIIRVGITCKLICSR*TRTVLRALMFDLLK Trigger: TTTTAACAAGTCAAACATCAAGGCCCGGAGAACTGTCCTTGTTCATCTACTGCAGATAAGCTTACATGTGATACCTACCCTGATAATCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS CCA 72 bp | CCCCAAATACCAGCCAACACAGCAGGAGGGGGCTGTTaGCCAGTAAGGCCCGCATTCCTTGGAAGACGACCC | + |
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Preference number: 6 (lower is better) Translates to: PQIPANTAGGGC*PVRPAFLGRRP Trigger: GGGTCGTCTTCCAAGGAATGCGGGCCTTACTGGCCAACAGCCCCCTCCTGCTGTGTTGGCTGGTATTTGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS CAA 72 bp | GCCCCAAATACCAGCCAACACAGCAGGAGGGGGCTGTaGGCCAGTAAGGCCCGCATTCCTTGGAAGACGACC | + |
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Preference number: 6 (lower is better) Translates to: APNTSQHSRRGL*ASKARIPWKTT Trigger: GGTCGTCTTCCAAGGAATGCGGGCCTTACTGGCCAACAGCCCCCTCCTGCTGTGTTGGCTGGTATTTGGGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS GCA 72 bp | GTCAGAGTAAGGAGGATCCCTTCTCCCACACTTAGCTaGGCCCCAAATACCAGCCAACACAGCAGGAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: VRVRRIPSPTLS*APNTSQHSRRG Trigger: CCCCCTCCTGCTGTGTTGGCTGGTATTTGGGGCGCAGCTAAGTGTGGGAGAAGGGATCCTCCTTACTCTGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS GCA 72 bp | GCAGCTTCTTCCGACAGCACAGCCAAGGGTACAGTTTaGTCTGCAGATCTCTGTTGTGGAGCCCATAGACCA | + |
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Preference number: 6 (lower is better) Translates to: AASSDSTAKGTV*SADLCCGAHRP Trigger: TGGTCTATGGGCTCCACAACAGAGATCTGCAGAGCAAACTGTACCCTTGGCTGTGCTGTCGGAAGAAGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS CAA 72 bp | TTGAGAAAGCCACCACGTACACAGAGGCCTTCACGGTaGCCTCTAGTCTCAGCCAGTCAGATACGTTGCAAT | + |
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Preference number: 6 (lower is better) Translates to: LRKPPRTQRPSR*PLVSASQIRCN Trigger: ATTGCAACGTATCTGACTGGCTGAGACTAGAGGCAACCGTGAAGGCCTCTGTGTACGTGGTGGCTTTCTCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS TCA 72 bp | GACCAGCCGCACCTCTTTCCTCAGCTGCAGACTCTGTaGCACTATTGCGATAATGACAATGGTGAGAGATGT | + |
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Preference number: 6 (lower is better) Translates to: DQPHLFPQLQTL*HYCDNDNGERC Trigger: ACATCTCTCACCATTGTCATTATCGCAATAGTGTCACAGAGTCTGCAGCTGAGGAAAGAGGTGCGGCTGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS CCA 72 bp | ACAGTTCTCCGGGCCTTGATGTTTGACTTGTTAAAATaGCCAGCCTGCTTCCCTTCTCGGTATATCAGACAG | + |
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Preference number: 6 (lower is better) Translates to: TVLRALMFDLLK*PACFPSRYIRQ Trigger: CTGTCTGATATACCGAGAAGGGAAGCAGGCTGGCCATTTTAACAAGTCAAACATCAAGGCCCGGAGAACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS TCA 72 bp | AGGGTAGGTATCACATGTAAGCTTATCTGCAGTAGATaGACAAGGACAGTTCTCCGGGCCTTGATGTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: RVGITCKLICSR*TRTVLRALMFD Trigger: GTCAAACATCAAGGCCCGGAGAACTGTCCTTGTTCATCTACTGCAGATAAGCTTACATGTGATACCTACCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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| CDS TCA 72 bp | GCAGATCTCTGTTGTGGAGCCCATAGACCAAAGGGTTaGAACACTGTGCAAAAGCAAAGATACCAAAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: ADLCCGAHRPKG*NTVQKQRYQKG Trigger: CCCTTTTTGGTATCTTTGCTTTTGCACAGTGTTTCAACCCTTTGGTCTATGGGCTCCACAACAGAGATCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078827.3 |
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