RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CSPP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056763

Ensembl transcript IDs: ENSMUST00000071087.12, ENSMUST00000117415.8, ENSMUST00000118263.8, ENSMUST00000119714.8, ENSMUST00000122156.8, ENSMUST00000149214.3, ENSMUST00000155974.8, ENSMUST00000186294.7, ENSMUST00000187226.7, ENSMUST00000188449.7, ENSMUST00000191012.7

Found 285 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATTCTGTCCAACAGTATTCACAGCTGGCGGTGCTACCTGGTGAGTaGCAGGGGCAGAGACATGAGGGGCAGGCTGTCCTCCAATCATTC +
Preference number: 1 (lower is better)
Translates to: HSVQQYSQLAVLPGE*QGQRHEGQAVLQSF
Trigger: GAATGATTGGAGGACAGCCTGCCCCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAATACTGTTGGACAGAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
3UTR TCA 90 bp GACAGGGGCAGAGACATGAGGGGCAGGCTGTCCTCCAATCATTCCTaGACCATAGTATACAATATTGGGATCCAGTGTATTTCTGGCACC +
Preference number: 1 (lower is better)
Translates to: DRGRDMRGRLSSNHS*TIVYNIGIQCISGT
Trigger: GGTGCCAGAAATACACTGGATCCCAATATTGTATACTATGGTTCAGGAATGATTGGAGGACAGCCTGCCCCTCATGTCTCTGCCCCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
3UTR TCA 90 bp TCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTTaGATCTTTCATTGCCTAGCAGCTGGCATAGTCACAGCAACAGCA +
Preference number: 1 (lower is better)
Translates to: SYGMCNYRYENEQLV*IFHCLAAGIVTATA
Trigger: TGCTGTTGCTGTGACTATGCCAGCTGCTAGGCAATGAAAGATTCAAACAAGCTGCTCATTTTCATATCTGTAGTTACACATTCCATAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
3UTR CCA 90 bp AAAATAAGATGGAGGCAGAAAAATGTAACATTTAATCATGGCTCATaGATGATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACA +
Preference number: 1 (lower is better)
Translates to: KIRWRQKNVTFNHGS*MITNPFAPMECVTT
Trigger: TGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCTCCATCTTATTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
3UTR-3UTR TCA 90 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCCTGCAGAGGGCAGCTGTaGTGGTGGAGGGAAGGCATT +
Preference number: 2 (lower is better)
Translates to: CSRLLSKSSPFNLFLLRSCRGQL*WWREGI
Trigger: AATGCCTTCCCTCCACCATCACAGCTGCCCTCTGCA...GGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
3UTR-3UTR CCA 90 bp ATTCACAGCTGGCGGTGCTACCTGGTGAGTGACAGGGGCAGAGACATGAGGGGCCATAGTATACAATATTaGGATCCAGTGTATTTCTGG +
Preference number: 2 (lower is better)
Translates to: IHSWRCYLVSDRGRDMRGHSIQY*DPVYFW
Trigger: CCAGAAATACACTGGATCCCAATATTGTATACTATG...GCCCCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
3UTR CAA 90 bp GTCAGTCATCTGGGAAGCTATGATCCAAAACAACCTGAGATTTCTTaGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCC +
Preference number: 2 (lower is better)
Translates to: VSHLGSYDPKQPEIS*EATGNRNPDCGSES
Trigger: GGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR-3UTR CCA 90 bp TTTGAAGAAACAGTGTTCAGAATGGAGATCATAAGAACCAGCCTTAAGTACTCTTTCTTTGGAAGCCACTaGCAACAGGAATCCAGACTG +
Preference number: 2 (lower is better)
Translates to: FEETVFRMEIIRTSLKYSFFGSH*QQESRL
Trigger: CAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGAA...AGAGTACTTAAGGCTGGTTCTTATGATCTCCATTCTGAACACTGTTTCTTCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122156.8
3UTR-3UTR CCA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGAACCTGAGATTTCTTTaGAAGCCACTGGCAACAGGA +
Preference number: 2 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGNLRFL*KPLATG
Trigger: TCCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTT...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR-3UTR CCA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTATACTGCGTAGGGAACTaGGTTTTATCCCTGTCAGTC +
Preference number: 2 (lower is better)
Translates to: GAFPELQTIKIQLKETRVYCVGN*VLSLSV
Trigger: GACTGACAGGGATAAAACCCAGTTCCCTACGCAGTA...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR-3UTR CCA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTATCCCTGTCAGTCATCTaGGAAGCTATGATCCAAAAC +
Preference number: 2 (lower is better)
Translates to: GAFPELQTIKIQLKETRVSLSVI*EAMIQN
Trigger: GTTTTGGATCATAGCTTCCCAGATGACTGACAGGGA...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR-3UTR GCA 90 bp CAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTAACAGTGGCTGTATTGTTTCACAGTaGTGTGTACACTCTAGCTCA +
Preference number: 2 (lower is better)
Translates to: QVYKTSLSELFLHNANSGCIVSQ*CVHSSS
Trigger: TGAGCTAGAGTGTACACAGCACTGTGAAACAATACA...GCCACTGTTAGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
3UTR TCA 72 bp CAACAGTATTCACAGCTGGCGGTGCTACCTGGTGAGTaGCAGGGGCAGAGACATGAGGGGCAGGCTGTCCTC +
Preference number: 3 (lower is better)
Translates to: QQYSQLAVLPGE*QGQRHEGQAVL
Trigger: GAGGACAGCCTGCCCCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAATACTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
3UTR GCA 72 bp CTGTTCATTCTGTCCAACAGTATTCACAGCTGGCGGTaGTACCTGGTGAGTGACAGGGGCAGAGACATGAGG +
Preference number: 3 (lower is better)
Translates to: LFILSNSIHSWR*YLVSDRGRDMR
Trigger: CCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAATACTGTTGGACAGAATGAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
3UTR GCA 72 bp TACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTaGGTTCCCTTGCAGAGGGCAGCTGTGATGGTGGAG +
Preference number: 3 (lower is better)
Translates to: YCQNLVLLICSS*VPLQRAAVMVE
Trigger: CTCCACCATCACAGCTGCCCTCTGCAAGGGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
3UTR CCA 72 bp TGGGAAGCTATGATCCAAAACAACCTGAGATTTCTTTaGAAGCCACTGGCAACAGGAATCCAGACTGTGGAT +
Preference number: 3 (lower is better)
Translates to: WEAMIQNNLRFL*KPLATGIQTVD
Trigger: ATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR CCA 72 bp CCTAGCAACCTAGTTTTAACTTACTGCGTAGGGAACTaGGTTTTATCCCTGTCAGTCATCTGGGAAGCTATG +
Preference number: 3 (lower is better)
Translates to: PSNLVLTYCVGN*VLSLSVIWEAM
Trigger: CATAGCTTCCCAGATGACTGACAGGGATAAAACCCAGTTCCCTACGCAGTAAGTTAAAACTAGGTTGCTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR-3UTR CAA 90 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCCGGTGGAGGGAAGGCATaGTCTTCAATAACAGGATAT +
Preference number: 3 (lower is better)
Translates to: CSRLLSKSSPFNLFLLRSGGGKA*SSITGY
Trigger: ATATCCTGTTATTGAAGACAATGCCTTCCCTCCACC...GGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
3UTR CCA 72 bp TGCGTAGGGAACTGGGTTTTATCCCTGTCAGTCATCTaGGAAGCTATGATCCAAAACAACCTGAGATTTCTT +
Preference number: 3 (lower is better)
Translates to: CVGNWVLSLSVI*EAMIQNNLRFL
Trigger: AAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGACAGGGATAAAACCCAGTTCCCTACGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR GCA 72 bp AAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTaGGTAGGGAACTGGGTTTTATCCCTGTCAGTCATC +
Preference number: 3 (lower is better)
Translates to: KIRMPSNLVLTY*VGNWVLSLSVI
Trigger: GATGACTGACAGGGATAAAACCCAGTTCCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR-3UTR CAA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTACAACCTGAGATTTCTTaGGAAGCCACTGGCAACAGG +
Preference number: 3 (lower is better)
Translates to: GAFPELQTIKIQLKETRVQPEIS*EATGNR
Trigger: CCTGTTGCCAGTGGCTTCCAAAGAAATCTCAGGTTG...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
3UTR TCA 72 bp ATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTTaGATCTTTCATTGCCTAGCAGCTGGCATAGTCACA +
Preference number: 3 (lower is better)
Translates to: MCNYRYENEQLV*IFHCLAAGIVT
Trigger: TGTGACTATGCCAGCTGCTAGGCAATGAAAGATTCAAACAAGCTGCTCATTTTCATATCTGTAGTTACACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
3UTR TCA 72 bp ACCATCAAGATCCCAGGAGTGCTGTGGTTCCCAAACTaGGAACTGAGAGGTCTTTTAATAAACTTTAAATAT +
Preference number: 3 (lower is better)
Translates to: TIKIPGVLWFPN*ELRGLLINFKY
Trigger: ATATTTAAAGTTTATTAAAAGACCTCTCAGTTCTCAGTTTGGGAACCACAGCACTCCTGGGATCTTGATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122156.8
3UTR TCA 72 bp ATCATAAGAACCAGCCTTAAGTACTCTCAGTACAGTTaGAGGAAGTTGGTAAAGGTCGTTACATTTATGAGA +
Preference number: 3 (lower is better)
Translates to: IIRTSLKYSQYS*RKLVKVVTFMR
Trigger: TCTCATAAATGTAACGACCTTTACCAACTTCCTTCAACTGTACTGAGAGTACTTAAGGCTGGTTCTTATGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122156.8
3UTR-3UTR CAA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTATTTTTACTCTCCTACTaGGTTAAGCTGAGACAAGAA +
Preference number: 3 (lower is better)
Translates to: GAFPELQTIKIQLKETRVFLLSY*VKLRQE
Trigger: TTCTTGTCTCAGCTTAACCAAGTAGGAGAGTAAAAA...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp GATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGAGGGTTTATGGCGGTGCTACCTGGTaGGTGACAGGGGCAGAGACA +
Preference number: 4 (lower is better)
Translates to: DTGERSTVKGTTGSERVYGGATW*VTGAET
Trigger: TGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCC...ATAAACCCTCTCGGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp ATTCACAGCTGGCGGTGCTACCTGGTGAGTGACAGGGGCAGAGACATGAGGGGCTCCAAAGAGCATGCCTaGAAATGGACTTGTGATATC +
Preference number: 4 (lower is better)
Translates to: IHSWRCYLVSDRGRDMRGSKEHA*KWTCDI
Trigger: GATATCACAAGTCCATTTGCAGGCATGCTCTTTGGA...GCCCCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
CDS-3UTR GCA 90 bp ATTCACAGCTGGCGGTGCTACCTGGTGAGTGACAGGGGCAGAGACATGAGGGGCCTCTTCTTCTTCTGTTaGTCAGCTATCTGTTCTAGT +
Preference number: 4 (lower is better)
Translates to: IHSWRCYLVSDRGRDMRGLFFFC*SAICSS
Trigger: ACTAGAACAGATAGCTGAGCAACAGAAGAAGAAGAG...GCCCCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
CDS-3UTR CCA 90 bp GTCAGTCATCTGGGAAGCTATGATCCAAAACAACCTGAGATTTCTTTGGAAGCCGCGGGCTCTTCTCTCTaGGACACCAGCGCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: VSHLGSYDPKQPEISLEAAGSSL*DTSAAR
Trigger: TCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGC...GGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp AGTATTCACAGCTGGCGGTGCTACCTGGTGAGTGACAGGGGCAGAGACATGAGGGAGCATGCCTGCAAATaGACTTGTGATATCGAGATC +
Preference number: 4 (lower is better)
Translates to: SIHSWRCYLVSDRGRDMREHACK*TCDIEI
Trigger: GATCTCGATATCACAAGTCCATTTGCAGGCATGCTC...CCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAATACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
CDS-3UTR GCA 90 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCCTCGTCACTGTCCAGGTaGAGCAGCCGCCCCTGCAAA +
Preference number: 4 (lower is better)
Translates to: CSRLLSKSSPFNLFLLRSSSLSR*SSRPCK
Trigger: TTTGCAGGGGCGGCTGCTGCACCTGGACAGTGACGA...GGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR GCA 90 bp ATTCACAGCTGGCGGTGCTACCTGGTGAGTGACAGGGGCAGAGACATGAGGGGCTGTTCTAGTAGTTCTTaGCTATATTTCTCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: IHSWRCYLVSDRGRDMRGCSSSS*LYFSFL
Trigger: AAGGAAGGAGAAATATAGGCAAGAACTACTAGAACA...GCCCCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
CDS-3UTR GCA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCGGTCTCGGTCGGCTCTaGAATGTTGTCTGTCAAGCA +
Preference number: 4 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLGLGRL*NVVCQA
Trigger: TGCTTGACAGACAACATTGCAGAGCCGACCGAGACC...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGAGGGTTTATCTATTAAGCCTCTTCTaGTGCTCTCGGAGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: DTGERSTVKGTTGSERVYLLSLF*CSRSRA
Trigger: GGCCCTACTCCGAGAGCAGCAGAAGAGGCTTAATAG...ATAAACCCTCTCGGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
3UTR CAA 72 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTaGTTCCTCCTGCGTTCCCTTGCAGAGGGCAGCTGT +
Preference number: 4 (lower is better)
Translates to: CSRLLSKSSPFN*FLLRSLAEGSC
Trigger: ACAGCTGCCCTCTGCAAGGGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR GCA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATATCCCTCCTCCGCTCCTaGTCCTCCTCATACTCTTGC +
Preference number: 4 (lower is better)
Translates to: CVHSSSPPLNGKHILMHISLLRS*SSSYSC
Trigger: GCAAGAGTATGAGGAGGAGCAGGAGCGGAGGAGGGA...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCCGAGTTGGTTCTTCCTTaGAGGCACTGGAGGAGACTG +
Preference number: 4 (lower is better)
Translates to: CSRLLSKSSPFNLFLLRSELVLP*RHWRRL
Trigger: CAGTCTCCTCCAGTGCCTGCAAGGAAGAACCAACTC...GGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR GCA 90 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCCCTATTAAGCCTCTTCTaGTGCTCTCGGAGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: CSRLLSKSSPFNLFLLRSLLSLF*CSRSRA
Trigger: GGCCCTACTCCGAGAGCAGCAGAAGAGGCTTAATAG...GGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CCA 90 bp CAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTAACAGTGGCGCGGGCTCTTCTCTCTaGGACACCAGCGCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: QVYKTSLSELFLHNANSGAGSSL*DTSAAR
Trigger: TCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGC...GCCACTGTTAGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp ACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCCTATGGAATGTGGAGGGGGAGGTGTCTaGAAAGCTACTCTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: TFNHGSWMITNPFAPMECGGGGV*KATLGL
Trigger: GAGGCCCAGAGTAGCTTTCCAGACACCTCCCCCTCC...ACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCTTCCTTTGGCGTCTCTaGGAGGAGCACCACCTCCGC +
Preference number: 4 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSFLWRL*EEHHLR
Trigger: GCGGAGGTGGTGCTCCTCTCAGAGACGCCAAAGGAA...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp ACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCCTATGGAATGTTGCAGAGGGCAGCTGTaGTGGTGGAGGGAAGGCATT +
Preference number: 4 (lower is better)
Translates to: TFNHGSWMITNPFAPMECCRGQL*WWREGI
Trigger: AATGCCTTCCCTCCACCATCACAGCTGCCCTCTGCA...ACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GTCAGTCATCTGGGAAGCTATGATCCAAAACAACCTGAGATTTCTTTGGAAGCCTGGGCTGTTGTTGGCTaGTTGGTGGAATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: VSHLGSYDPKQPEISLEAWAVVG*LVECSP
Trigger: AGGAGAACATTCCACCAAGCAGCCAACAACAGCCCA...GGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTTACAGGCCCTCCTCTTaGCGGCTTAGCCAGGGTCCC +
Preference number: 4 (lower is better)
Translates to: QKNVTFNHGSWMITNPFAYRPSS*RLSQGP
Trigger: GGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTA...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCTACAGGCCCTCCTCTTaGCGGCTTAGCCAGGGTCCC +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSYRPSS*RLSQGP
Trigger: GGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTA...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTATACAGGCCCTCCTCTTaGCGGCTTAGCCAGGGTCCC +
Preference number: 4 (lower is better)
Translates to: GAFPELQTIKIQLKETRVYRPSS*RLSQGP
Trigger: GGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTA...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp TCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTCCAGTTCACCAAGGGTaGTGCCGAGTCCACTGTGCA +
Preference number: 4 (lower is better)
Translates to: SLCSYGMCNYRYENEQLVPVHQG*CRVHCA
Trigger: TGCACAGTGGACTCGGCAGCACCCTTGGTGAACTGG...AACAAGCTGCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTTCGTCACTGTCCAGGTaGAGCAGCCGCCCCTGCAAA +
Preference number: 4 (lower is better)
Translates to: NIKVGPQARHSIQDTGERSSLSR*SSRPCK
Trigger: TTTGCAGGGGCGGCTGCTGCACCTGGACAGTGACGA...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCCTGTTGTTGGCTGCTTaGTGGAATGTTCTCCTTAGC +
Preference number: 4 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLLLLAA*WNVLLS
Trigger: GCTAAGGAGAACATTCCACCAAGCAGCCAACAACAG...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTAACTCCCAGAGTAGATaGGTCTGTTTCACCAGTAGA +
Preference number: 4 (lower is better)
Translates to: SLEATGNRNPDCGSESIANSQSR*VCFTSR
Trigger: TCTACTGGTGAAACAGACCCATCTACTCTGGGAGTT...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAGCGGGCTCTTCTCTCTaGGACACCAGCGCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRAGSSL*DTSAAR
Trigger: TCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGC...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCGCGGGCTCTTCTCTCTaGGACACCAGCGCTGCCAGA +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSAGSSL*DTSAAR
Trigger: TCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGC...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGAGGGTTTATCGAGATCAGCAGATCTaGGTGGTCCATTACAGTGAA +
Preference number: 4 (lower is better)
Translates to: DTGERSTVKGTTGSERVYRDQQI*VVHYSE
Trigger: TTCACTGTAATGGACCACCCAGATCTGCTGATCTCG...ATAAACCCTCTCGGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTCTTCCTTGCAGGCACTaGAGGAGACTGTGCCCGGGA +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNALPCRH*RRLCPG
Trigger: TCCCGGGCACAGTCTCCTCCAGTGCCTGCAAGGAAG...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp GATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGAGGGTTTATTTACCCCTGAGAAACTaGTTGTATTCTCGGTTGCGT +
Preference number: 4 (lower is better)
Translates to: DTGERSTVKGTTGSERVYLPLRN*LYSRLR
Trigger: ACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAA...ATAAACCCTCTCGGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTATTCTGCCTTACCCCTaGGAAACTGATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: SLEATGNRNPDCGSESIAILPYP*ETDCIL
Trigger: GAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAAT...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTGTGCTACCTGGTGAGTaGCAGGGGCAGAGACATGAG +
Preference number: 4 (lower is better)
Translates to: NIKVGPQARHSIQDTGERVLPGE*QGQRHE
Trigger: CTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCAC...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTGAGCCAGGGCTCAGTTaGCGCAGAGTTGCGTCCATC +
Preference number: 4 (lower is better)
Translates to: QKNVTFNHGSWMITNPFAEPGLS*RRVASI
Trigger: GATGGACGCAACTCTGCGGCAACTGAGCCCTGGCTC...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTTCAGACTTTCTGAAGTaGCAGGGCGGAGCCAGGGCT +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNASDFLK*QGGARA
Trigger: AGCCCTGGCTCCGCCCTGGCACTTCAGAAAGTCTGA...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCCATCTCCATGTACGGTaGATCACTTTCCAATTCTGC +
Preference number: 4 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLHLHVR*ITFQFC
Trigger: GCAGAATTGGAAAGTGATCCACCGTACATGGAGATG...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp GATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGAGGGTTTATAACTCCCAGAGTAGATaGGTCTGTTTCACCAGTAGA +
Preference number: 4 (lower is better)
Translates to: DTGERSTVKGTTGSERVYNSQSR*VCFTSR
Trigger: TCTACTGGTGAAACAGACCCATCTACTCTGGGAGTT...ATAAACCCTCTCGGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCATAACCGCTCATCAATaGGAAGAGAAACTCCCAGAG +
Preference number: 4 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLITAHQ*EEKLPE
Trigger: CTCTGGGAGTTTCTCTTCCCATTGATGAGCGGTTAT...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCCTTCCTTGCAGGCACTaGAGGAGACTGTGCCCGGGA +
Preference number: 4 (lower is better)
Translates to: IVFNNRICLTISTNKSTILPCRH*RRLCPG
Trigger: TCCCGGGCACAGTCTCCTCCAGTGCCTGCAAGGAAG...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CCA 90 bp TGTGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTTCTTCTGCACGGAGTTaGTTCTTCCTTGCAGGCACT +
Preference number: 4 (lower is better)
Translates to: CAADYCQNLVLLICSSCVSSARS*FFLAGT
Trigger: AGTGCCTGCAAGGAAGAACCAACTCCGTGCAGAAGA...AACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CCA 90 bp TCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTCCAAGTAAACGTGCCTaGCTTCCCAGGCCCCTTATG +
Preference number: 4 (lower is better)
Translates to: SLCSYGMCNYRYENEQLVPSKRA*LPRPLM
Trigger: CATAAGGGGCCTGGGAAGCCAGGCACGTTTACTTGG...AACAAGCTGCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp GTCAGTCATCTGGGAAGCTATGATCCAAAACAACCTGAGATTTCTTTGGAAGCCTTACCCCTGAGAAACTaGTTGTATTCTCGGTTGCGT +
Preference number: 4 (lower is better)
Translates to: VSHLGSYDPKQPEISLEALPLRN*LYSRLR
Trigger: ACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAA...GGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp AGGCAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTCCGTTTCAGACTTTCTaGAGTGCCAGGGCGGAGCCA +
Preference number: 4 (lower is better)
Translates to: RQKNVTFNHGSWMITNPFPFQTF*SARAEP
Trigger: TGGCTCCGCCCTGGCACTTCAGAAAGTCTGAAACGG...AAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCTCCAAAGAGCATGCCTaGAAATGGACTTGTGATATC +
Preference number: 4 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLSKEHA*KWTCDI
Trigger: GATATCACAAGTCCATTTGCAGGCATGCTCTTTGGA...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTGTTCACCAAGGGTGCTaGCGAGTCCACTGTGCAAGT +
Preference number: 4 (lower is better)
Translates to: NIKVGPQARHSIQDTGERVHQGC*RVHCAS
Trigger: ACTTGCACAGTGGACTCGGCAGCACCCTTGGTGAAC...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp AGGCAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTCTCTTGCTGAATCCTTaGCCTCTGCTCCGCAAGCCG +
Preference number: 4 (lower is better)
Translates to: RQKNVTFNHGSWMITNPFLLLNP*PLLRKP
Trigger: CGGCTTGCGGAGCAGAGGGCAAGGATTCAGCAAGAG...AAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp ACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCCTATGGAATGTCCCTTGGGCTGTTGTTaGCTGCTTGGTGGAATGTTC +
Preference number: 4 (lower is better)
Translates to: TFNHGSWMITNPFAPMECPLGCC*LLGGMF
Trigger: GAACATTCCACCAAGCAGCCAACAACAGCCCAAGGG...ACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGCCCTTGGGCTGTTGTTaGCTGCTTGGTGGAATGTTC +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGPLGCC*LLGGMF
Trigger: GAACATTCCACCAAGCAGCCAACAACAGCCCAAGGG...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTGTTTCAATCTTTCCTTaGCAGATAACCGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: SLEATGNRNPDCGSESIAVSIFP*QITAHQ
Trigger: TTGATGAGCGGTTATCTGCCAAGGAAAGATTGAAAC...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTTCGATAGTTAGAAGCTaGAGGGGCAAGGAGCGGAGG +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNASIVRS*RGKERR
Trigger: CCTCCGCTCCTTGCCCCTCCAGCTTCTAACTATCGA...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATATCTTCTGCACGGAGTTaGTTCTTCCTTGCAGGCACT +
Preference number: 4 (lower is better)
Translates to: CVHSSSPPLNGKHILMHISSARS*FFLAGT
Trigger: AGTGCCTGCAAGGAAGAACCAACTCCGTGCAGAAGA...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTTCCTCATACTCTTGCTaGATCCTTGCCCTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNASSYSC*ILALCS
Trigger: GGAGCAGAGGGCAAGGATTCAGCAAGAGTATGAGGA...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGTGGGCTGTTGTTGGCTaGTTGGTGGAATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGWAVVG*LVECSP
Trigger: AGGAGAACATTCCACCAAGCAGCCAACAACAGCCCA...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCATCTTCATATGTTCTTaGATCTGGGTTATGGTAGGC +
Preference number: 4 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLIFICS*IWVMVG
Trigger: GCCTACCATAACCCAGATGCAAGAACATATGAAGAT...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCCGAAGGCTGTCTCAAGTaGTTTGTTTCATCTCCGATA +
Preference number: 4 (lower is better)
Translates to: CSRLLSKSSPFNLFLLRSEGCLK*FVSSPI
Trigger: TATCGGAGATGAAACAAAGCACTTGAGACAGCCTTC...GGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR GCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTGAGTTGGTTCTTCCTTaGAGGCACTGGAGGAGACTG +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNAELVLP*RHWRRL
Trigger: CAGTCTCCTCCAGTGCCTGCAAGGAAGAACCAACTC...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCCAGTTGCCGCAGAGTTaGGTCCATCATCACTCAGGT +
Preference number: 4 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSQLPQS*VHHHSG
Trigger: ACCTGAGTGATGATGGACGCAACTCTGCGGCAACTG...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp TCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTTGTGTTTGGCTCTTCTaGGACATCATCCCCATCCAC +
Preference number: 4 (lower is better)
Translates to: SLCSYGMCNYRYENEQLVCVWLF*DIIPIH
Trigger: GTGGATGGGGATGATGTCCCAGAAGAGCCAAACACA...AACAAGCTGCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp CATAGTATTCAAGATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGCATGCCTGCAAATaGACTTGTGATATCGAGATC +
Preference number: 4 (lower is better)
Translates to: HSIQDTGERSTVKGTTGSEHACK*TCDIEI
Trigger: GATCTCGATATCACAAGTCCATTTGCAGGCATGCTC...GGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp CAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTAACAGTGGCTCTGGAAAGCTACTCTaGGCCTCTCAGGTGGCATCT +
Preference number: 4 (lower is better)
Translates to: QVYKTSLSELFLHNANSGSGKLL*ASQVAS
Trigger: AGATGCCACCTGAGAGGCCCAGAGTAGCTTTCCAGA...GCCACTGTTAGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp GGGATCCAGTGTATTTCTGGCACCGTAAAAATAGTACGCATCATCGTAAGGAGTGGTGGTCCATTACAGTaGACACTTTTATTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: GIQCISGTVKIVRIIVRSGGPLQ*TLLFSA
Trigger: TGCTGAAAATAAAAGTGTTCACTGTAATGGACCACC...ACTCCTTACGATGATGCGTACTATTTTTACGGTGCCAGAAATACACTGGATCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
CDS-3UTR TCA 90 bp TGTGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCTTGCAATTTTGTTCTaGAGAGCAGGAACTACAGGA +
Preference number: 4 (lower is better)
Translates to: CAADYCQNLVLLICSSCVLAILF*RAGTTG
Trigger: TCCTGTAGTTCCTGCTCTTCAGAACAAAATTGCAAG...AACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR GCA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTGATTGTATTCTCGGTTaGGTTCAAGTTTCAATCTTT +
Preference number: 4 (lower is better)
Translates to: SLEATGNRNPDCGSESIADCILG*VQVSIF
Trigger: AAAGATTGAAACTTGAACGCAACCGAGAATACAATC...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAGGTCTCGGTCGGCTCTaGAATGTTGTCTGTCAAGCA +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRGLGRL*NVVCQA
Trigger: TGCTTGACAGACAACATTGCAGAGCCGACCGAGACC...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTAGGTCTCGGTCGGCTCTaGAATGTTGTCTGTCAAGCA +
Preference number: 4 (lower is better)
Translates to: GAFPELQTIKIQLKETRVGLGRL*NVVCQA
Trigger: TGCTTGACAGACAACATTGCAGAGCCGACCGAGACC...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp TCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTTTCCCAGGCCCCTTATaGTGTTCTTCATTCAGATGC +
Preference number: 4 (lower is better)
Translates to: SLCSYGMCNYRYENEQLVFPGPL*CSSFRC
Trigger: GCATCTGAATGAAGAACAGCATAAGGGGCCTGGGAA...AACAAGCTGCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTATTTTTCTTTCTCTTTaGTTGTGTAATGCCCTGAGT +
Preference number: 4 (lower is better)
Translates to: SLEATGNRNPDCGSESIAIFLSL*LCNALS
Trigger: ACTCAGGGCATTACACAAGCAAAGAGAAAGAAAAAT...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGCTGTTGTTGGCTGCTTaGTGGAATGTTCTCCTTAGC +
Preference number: 4 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGLLLAA*WNVLLS
Trigger: GCTAAGGAGAACATTCCACCAAGCAGCCAACAACAG...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGACCCTTGGGCTGTTGTTaGCTGCTTGGTGGAATGTTC +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRPLGCC*LLGGMF
Trigger: GAACATTCCACCAAGCAGCCAACAACAGCCCAAGGG...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTTCTGGGCCTCTCAGGTaGCATCTCTTCAAAGTGTCT +
Preference number: 4 (lower is better)
Translates to: NIKVGPQARHSIQDTGERSGPLR*HLFKVS
Trigger: AGACACTTTGAAGAGATGCCACCTGAGAGGCCCAGA...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTAACAGTATTCACAGCTaGCGGTGCTACCTGGTGAGT +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNANSIHS*RCYLVS
Trigger: ACTCACCAGGTAGCACCGCCAGCTGTGAATACTGTT...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp GATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGAGGGTTTATGAAGTGGCTAAATTTTaGTCTATAGATACAACAGCC +
Preference number: 4 (lower is better)
Translates to: DTGERSTVKGTTGSERVYEVAKF*SIDTTA
Trigger: GGCTGTTGTATCTATAGACCAAAATTTAGCCACTTC...ATAAACCCTCTCGGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGTTACCCCTGAGAAACTaGTTGTATTCTCGGTTGCGT +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGLPLRN*LYSRLR
Trigger: ACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAA...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCCTCAAAGACCAGTCCTaGATTCCTGAGTCCATCACT +
Preference number: 4 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSLKDQS*IPESIT
Trigger: AGTGATGGACTCAGGAATTCAGGACTGGTCTTTGAG...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp TCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTTATGATGGTGTCGACTaGAGGAGGTCTTTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: SLCSYGMCNYRYENEQLVYDGVD*RRSLEF
Trigger: AAACTCCAAAGACCTCCTTCAGTCGACACCATCATA...AACAAGCTGCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp AGGCAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTTGGGCTGTTGTTGGCTaGTTGGTGGAATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: RQKNVTFNHGSWMITNPFWAVVG*LVECSP
Trigger: AGGAGAACATTCCACCAAGCAGCCAACAACAGCCCA...AAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGATGGGCTGTTGTTGGCTaGTTGGTGGAATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRWAVVG*LVECSP
Trigger: AGGAGAACATTCCACCAAGCAGCCAACAACAGCCCA...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCTGGGCTGTTGTTGGCTaGTTGGTGGAATGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSWAVVG*LVECSP
Trigger: AGGAGAACATTCCACCAAGCAGCCAACAACAGCCCA...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGAAGGCTTGGATGTTCTaGACCAGAAATGCCTACTTC +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGKAWMF*TRNAYF
Trigger: GAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTT...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp CATAGTATTCAAGATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGGTGTCAAACTAAACTaGTTTAGTCTATCAGGCGAT +
Preference number: 4 (lower is better)
Translates to: HSIQDTGERSTVKGTTGSGVKLN*FSLSGD
Trigger: ATCGCCTGATAGACTAAAGCAGTTTAGTTTGACACC...GGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATAGAAGGCTGTCTCAAGTaGTTTGTTTCATCTCCGATA +
Preference number: 4 (lower is better)
Translates to: CVHSSSPPLNGKHILMHIEGCLK*FVSSPI
Trigger: TATCGGAGATGAAACAAAGCACTTGAGACAGCCTTC...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGCATCTCCATGTACGGTaGATCACTTTCCAATTCTGC +
Preference number: 4 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGHLHVR*ITFQFC
Trigger: GCAGAATTGGAAAGTGATCCACCGTACATGGAGATG...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGAACTCCCAGAGTAGATaGGTCTGTTTCACCAGTAGA +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGNSQSR*VCFTSR
Trigger: TCTACTGGTGAAACAGACCCATCTACTCTGGGAGTT...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGATAACCGCTCATCAATaGGAAGAGAAACTCCCAGAG +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGITAHQ*EEKLPE
Trigger: CTCTGGGAGTTTCTCTTCCCATTGATGAGCGGTTAT...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp ATACAATATTGGGATCCAGTGTATTTCTGGCACCGTAAAAATAGTACGCATCATCGAGATCAGCAGATCTaGGTGGTCCATTACAGTGAA +
Preference number: 4 (lower is better)
Translates to: IQYWDPVYFWHRKNSTHHRDQQI*VVHYSE
Trigger: TTCACTGTAATGGACCACCCAGATCTGCTGATCTCG...ATGATGCGTACTATTTTTACGGTGCCAGAAATACACTGGATCCCAATATTGTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
CDS-3UTR CCA 90 bp TGTGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTACTGAAGGAGGTCTTTaGAGTTTGCTTGCAATTTTG +
Preference number: 4 (lower is better)
Translates to: CAADYCQNLVLLICSSCVTEGGL*SLLAIL
Trigger: CAAAATTGCAAGCAAACTCCAAAGACCTCCTTCAGT...AACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR TCA 90 bp ACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCCTATGGAATGTATTCTGCCTTACCCCTaGGAAACTGATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: TFNHGSWMITNPFAPMECILPYP*ETDCIL
Trigger: GAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAAT...ACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGATTCTGCCTTACCCCTaGGAAACTGATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGILPYP*ETDCIL
Trigger: GAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAAT...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAAGGCTTGGATGTTCTaGACCAGAAATGCCTACTTC +
Preference number: 4 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSKAWMF*TRNAYF
Trigger: GAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTT...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTGTCCAAATCAGCTCCTaGATCTCTCCGCATCTTTAT +
Preference number: 4 (lower is better)
Translates to: NIKVGPQARHSIQDTGERVQISS*ISPHLY
Trigger: ATAAAGATGCGGAGAGATGCAGGAGCTGATTTGGAC...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GTCAGTCATCTGGGAAGCTATGATCCAAAACAACCTGAGATTTCTTTGGAAGCCGAAGATGTAAATACCTaGCATTTGTATACACTCTCA +
Preference number: 4 (lower is better)
Translates to: VSHLGSYDPKQPEISLEAEDVNT*HLYTLS
Trigger: TGAGAGTGTATACAAATGGCAGGTATTTACATCTTC...GGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTTTGTTGGCTGCTTGGTaGAATGTTCTCCTTAGCCAT +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNALLAAW*NVLLSH
Trigger: ATGGCTAAGGAGAACATTCCACCAAGCAGCCAACAA...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGACTGTTGTTGGCTGCTTaGTGGAATGTTCTCCTTAGC +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRLLLAA*WNVLLS
Trigger: GCTAAGGAGAACATTCCACCAAGCAGCCAACAACAG...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCCTGTTGTTGGCTGCTTaGTGGAATGTTCTCCTTAGC +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSLLLAA*WNVLLS
Trigger: GCTAAGGAGAACATTCCACCAAGCAGCCAACAACAG...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp CATAGTATTCAAGATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCATATGTTCTTGCATCTaGGTTATGGTAGGCATCTAT +
Preference number: 4 (lower is better)
Translates to: HSIQDTGERSTVKGTTGSICSCI*VMVGIY
Trigger: ATAGATGCCTACCATAACCCAGATGCAAGAACATAT...GGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp TGTGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTGTCAAATATATCCATTaGGTTCCTCTCTCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: CAADYCQNLVLLICSSCVVKYIH*VPLSFP
Trigger: AGGAAAAGAGAGAGGAACCCAATGGATATATTTGAC...AACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CCA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTCATTATCAGTGCAGATaGTGTCCAAATCAGCTCCTG +
Preference number: 4 (lower is better)
Translates to: NIKVGPQARHSIQDTGERHYQCR*CPNQLL
Trigger: CAGGAGCTGATTTGGACACCATCTGCACTGATAATG...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGATTACCCCTGAGAAACTaGTTGTATTCTCGGTTGCGT +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRLPLRN*LYSRLR
Trigger: ACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAA...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCTTACCCCTGAGAAACTaGTTGTATTCTCGGTTGCGT +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSLPLRN*LYSRLR
Trigger: ACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAA...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCTTTATTTTCAGCAGCTaGGATCTGTGTGTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSFIFSS*DLCVWL
Trigger: GAGCCAAACACACAGATCTCAGCTGCTGAAAATAAA...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp ACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCCTATGGAATGTGGTGGTCCATTACAGTaGACACTTTTATTTTCAGCA +
Preference number: 4 (lower is better)
Translates to: TFNHGSWMITNPFAPMECGGPLQ*TLLFSA
Trigger: TGCTGAAAATAAAAGTGTTCACTGTAATGGACCACC...ACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATATGTTTGCAAAGGACCTaGGTTTTTATTTGCAGAATC +
Preference number: 4 (lower is better)
Translates to: CVHSSSPPLNGKHILMHICLQRT*VFICRI
Trigger: GATTCTGCAAATAAAAACTCAGGTCCTTTGCAAACA...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR TCA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCTATGATGGTGTCGACTaGAGGAGGTCTTTGGAGTTT +
Preference number: 4 (lower is better)
Translates to: IVFNNRICLTISTNKSTIYDGVD*RRSLEF
Trigger: AAACTCCAAAGACCTCCTTCAGTCGACACCATCATA...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR TCA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATATTTCTCATTCTAACTTaGTCGACATTTACACTGGAG +
Preference number: 4 (lower is better)
Translates to: CVHSSSPPLNGKHILMHIFLILT*STFTLE
Trigger: CTCCAGTGTAAATGTCGATCAAGTTAGAATGAGAAA...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATAGCCAGTTTCGCTTTTTaGTCTTCAATAAATTCATCC +
Preference number: 4 (lower is better)
Translates to: CVHSSSPPLNGKHILMHIASFAF*SSINSS
Trigger: GGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp CAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTAACAGTGGCTTTTTCTGTGGATTCTaGCTTACCCCTGAGAAACTG +
Preference number: 4 (lower is better)
Translates to: QVYKTSLSELFLHNANSGFFCGF*LTPEKL
Trigger: CAGTTTCTCAGGGGTAAGGCAGAATCCACAGAAAAA...GCCACTGTTAGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGGTTCTGCACCAGAAATaGCTACTTCTTCCTTTGTTT +
Preference number: 4 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGVLHQK*LLLPLF
Trigger: AAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAAC...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAAAGGCTTGGATGTTCTaGACCAGAAATGCCTACTTC +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRKAWMF*TRNAYF
Trigger: GAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTT...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCAAGGCTTGGATGTTCTaGACCAGAAATGCCTACTTC +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSKAWMF*TRNAYF
Trigger: GAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTT...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp ACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCCTATGGAATGTCTCTTCTTCTTCTGTTaGTCAGCTATCTGTTCTAGT +
Preference number: 4 (lower is better)
Translates to: TFNHGSWMITNPFAPMECLFFFC*SAICSS
Trigger: ACTAGAACAGATAGCTGAGCAACAGAAGAAGAAGAG...ACATTCCATAGGAGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCGTCCAAATCAGCTCCTaGATCTCTCCGCATCTTTAT +
Preference number: 4 (lower is better)
Translates to: IVFNNRICLTISTNKSTIVQISS*ISPHLY
Trigger: ATAAAGATGCGGAGAGATGCAGGAGCTGATTTGGAC...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCCATCTCCATGTACGGTaGATCACTTTCCAATTCTGC +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSHLHVR*ITFQFC
Trigger: GCAGAATTGGAAAGTGATCCACCGTACATGGAGATG...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTACATCTCCATGTACGGTaGATCACTTTCCAATTCTGC +
Preference number: 4 (lower is better)
Translates to: GAFPELQTIKIQLKETRVHLHVR*ITFQFC
Trigger: GCAGAATTGGAAAGTGATCCACCGTACATGGAGATG...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAAACTCCCAGAGTAGATaGGTCTGTTTCACCAGTAGA +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRNSQSR*VCFTSR
Trigger: TCTACTGGTGAAACAGACCCATCTACTCTGGGAGTT...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCAACTCCCAGAGTAGATaGGTCTGTTTCACCAGTAGA +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSNSQSR*VCFTSR
Trigger: TCTACTGGTGAAACAGACCCATCTACTCTGGGAGTT...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAATAACCGCTCATCAATaGGAAGAGAAACTCCCAGAG +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRITAHQ*EEKLPE
Trigger: CTCTGGGAGTTTCTCTTCCCATTGATGAGCGGTTAT...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTAATAACCGCTCATCAATaGGAAGAGAAACTCCCAGAG +
Preference number: 4 (lower is better)
Translates to: GAFPELQTIKIQLKETRVITAHQ*EEKLPE
Trigger: CTCTGGGAGTTTCTCTTCCCATTGATGAGCGGTTAT...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCATAACCGCTCATCAATaGGAAGAGAAACTCCCAGAG +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSITAHQ*EEKLPE
Trigger: CTCTGGGAGTTTCTCTTCCCATTGATGAGCGGTTAT...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp GGATCTGAATCCATTGCTGCTTTAGAATTTAAATTCACATGCACAATTTGGGGGGTTTCAATCTTTCCTTaGCAGATAACCGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: GSESIAALEFKFTCTIWGVSIFP*QITAHQ
Trigger: TTGATGAGCGGTTATCTGCCAAGGAAAGATTGAAAC...CCCCCAAATTGTGCATGTGAATTTAAATTCTAAAGCAGCAATGGATTCAGATCC
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCCTGTGTAGAAGGTTTTaGCTTATCCTCAAAGACCAG +
Preference number: 4 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSLCRRF*LILKDQ
Trigger: CTGGTCTTTGAGGATAAGCCAAAACCTTCTACACAG...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCCATTATCAGTGCAGATaGTGTCCAAATCAGCTCCTG +
Preference number: 4 (lower is better)
Translates to: IVFNNRICLTISTNKSTIHYQCR*CPNQLL
Trigger: CAGGAGCTGATTTGGACACCATCTGCACTGATAATG...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CCA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCCTGAGGAATTTGAACTaGTTGCTTACCATTCTGCGC +
Preference number: 4 (lower is better)
Translates to: IVFNNRICLTISTNKSTILRNLN*LLTILR
Trigger: GCGCAGAATGGTAAGCAACCAGTTCAAATTCCTCAG...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR TCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAATTCTGCCTTACCCCTaGGAAACTGATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRILPYP*ETDCIL
Trigger: GAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAAT...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCATTCTGCCTTACCCCTaGGAAACTGATTGTATTCTC +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSILPYP*ETDCIL
Trigger: GAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAAT...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR TCA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCTTGCAATTTTGTTCTaGAGAGCAGGAACTACAGGA +
Preference number: 4 (lower is better)
Translates to: QKNVTFNHGSWMITNPFALAILF*RAGTTG
Trigger: TCCTGTAGTTCCTGCTCTTCAGAACAAAATTGCAAG...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGGCCAGTTTCGCTTTTTaGTCTTCAATAAATTCATCC +
Preference number: 4 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGASFAF*SSINSS
Trigger: GGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGATTTTTCTGTGGATTCTaGCTTACCCCTGAGAAACTG +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRFFCGF*LTPEKL
Trigger: CAGTTTCTCAGGGGTAAGGCAGAATCCACAGAAAAA...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp CAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTAACAGTGGCGTTCTGCACCAGAAATaGCTACTTCTTCCTTTGTTT +
Preference number: 4 (lower is better)
Translates to: QVYKTSLSELFLHNANSGVLHQK*LLLPLF
Trigger: AAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAAC...GCCACTGTTAGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCGGAGAGCTTTGTGTTTaGAAAGGACCTGAGTTTTTA +
Preference number: 4 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSGELCV*KGPEFL
Trigger: TAAAAACTCAGGTCCTTTGCAAACACAAAGCTCTCC...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTACTGAAGGAGGTCTTTaGAGTTTGCTTGCAATTTTG +
Preference number: 4 (lower is better)
Translates to: NIKVGPQARHSIQDTGERTEGGL*SLLAIL
Trigger: CAAAATTGCAAGCAAACTCCAAAGACCTCCTTCAGT...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp TTTGAAGAAACAGTGTTCAGAATGGAGATCATAAGAACCAGCCTTAAGTACTCTGCCAGTTTCGCTTTTTaGTCTTCAATAAATTCATCC +
Preference number: 4 (lower is better)
Translates to: FEETVFRMEIIRTSLKYSASFAF*SSINSS
Trigger: GGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC...AGAGTACTTAAGGCTGGTTCTTATGATCTCCATTCTGAACACTGTTTCTTCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAGTTCTGCACCAGAAATaGCTACTTCTTCCTTTGTTT +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRVLHQK*LLLPLF
Trigger: AAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAAC...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCGTTCTGCACCAGAAATaGCTACTTCTTCCTTTGTTT +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSVLHQK*LLLPLF
Trigger: AAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAAC...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGGAAGATGTAAATACCTaGCATTTGTATACACTCTCA +
Preference number: 4 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGEDVNT*HLYTLS
Trigger: TGAGAGTGTATACAAATGGCAGGTATTTACATCTTC...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTGTTTCAATCTTTCCTTaGCAGATAACCGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: QKNVTFNHGSWMITNPFAVSIFP*QITAHQ
Trigger: TTGATGAGCGGTTATCTGCCAAGGAAAGATTGAAAC...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCGTTTCAATCTTTCCTTaGCAGATAACCGCTCATCAA +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSVSIFP*QITAHQ
Trigger: TTGATGAGCGGTTATCTGCCAAGGAAAGATTGAAAC...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAGCCAGTTTCGCTTTTTaGTCTTCAATAAATTCATCC +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRASFAF*SSINSS
Trigger: GGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCGCCAGTTTCGCTTTTTaGTCTTCAATAAATTCATCC +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSASFAF*SSINSS
Trigger: GGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGC...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CCA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTCATAGTATACAATATTaGGATCCAGTGTATTTCTGG +
Preference number: 4 (lower is better)
Translates to: QQQQVYKTSLSELFLHNAHSIQY*DPVYFW
Trigger: CCAGAAATACACTGGATCCCAATATTGTATACTATG...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CCA 90 bp AGGCAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGTCAAATATATCCATTaGGTTCCTCTCTCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: RQKNVTFNHGSWMITNPFVKYIH*VPLSFP
Trigger: AGGAAAAGAGAGAGGAACCCAATGGATATATTTGAC...AAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTGATTGTATTCTCGGTTaGGTTCAAGTTTCAATCTTT +
Preference number: 4 (lower is better)
Translates to: QKNVTFNHGSWMITNPFADCILG*VQVSIF
Trigger: AAAGATTGAAACTTGAACGCAACCGAGAATACAATC...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAGATTGTATTCTCGGTTaGGTTCAAGTTTCAATCTTT +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRDCILG*VQVSIF
Trigger: AAAGATTGAAACTTGAACGCAACCGAGAATACAATC...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCGATTGTATTCTCGGTTaGGTTCAAGTTTCAATCTTT +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSDCILG*VQVSIF
Trigger: AAAGATTGAAACTTGAACGCAACCGAGAATACAATC...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTAGATTGTATTCTCGGTTaGGTTCAAGTTTCAATCTTT +
Preference number: 4 (lower is better)
Translates to: GAFPELQTIKIQLKETRVDCILG*VQVSIF
Trigger: AAAGATTGAAACTTGAACGCAACCGAGAATACAATC...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTTGTTCTAGTAGTTCTTaGCTATATTTCTCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: QKNVTFNHGSWMITNPFACSSSS*LYFSFL
Trigger: AAGGAAGGAGAAATATAGGCAAGAACTACTAGAACA...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR GCA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAGAAGATGTAAATACCTaGCATTTGTATACACTCTCA +
Preference number: 4 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFREDVNT*HLYTLS
Trigger: TGAGAGTGTATACAAATGGCAGGTATTTACATCTTC...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR GCA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCGAAGATGTAAATACCTaGCATTTGTATACACTCTCA +
Preference number: 4 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSEDVNT*HLYTLS
Trigger: TGAGAGTGTATACAAATGGCAGGTATTTACATCTTC...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS CCA 90 bp CAAGGAGCGGAGGCGGGGGTGGATTCAGAGGCACAGGCAGAACCCTaGGATGCGCCAGTTCACCAAGGGTGCTGCCGAGTCCACTGTGCA +
Preference number: 5 (lower is better)
Translates to: QGAEAGVDSEAQAEP*DAPVHQGCCRVHCA
Trigger: TGCACAGTGGACTCGGCAGCACCCTTGGTGAACTGGCGCATCCCAGGGTTCTGCCTGTGCCTCTGAATCCACCCCCGCCTCCGCTCCTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 90 bp GAGGCACAGGCAGAACCCTGGGATGCGCCAGTTCACCAAGGGTGCTaGCGAGTCCACTGTGCAAGTCTTCATTGTGAGAAGGGGCGGAAT +
Preference number: 5 (lower is better)
Translates to: EAQAEPWDAPVHQGC*RVHCASLHCEKGRN
Trigger: ATTCCGCCCCTTCTCACAATGAAGACTTGCACAGTGGACTCGGCAGCACCCTTGGTGAACTGGCGCATCCCAGGGTTCTGCCTGTGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS TCA 90 bp CTGTTCTTCATTCAGATGCTCTGCCATGAACCGTTTCAGACTTTCTaGAGTGCCAGGGCGGAGCCAGGGCTCAGTTGCCGCAGAGTTGCG +
Preference number: 5 (lower is better)
Translates to: LFFIQMLCHEPFQTF*SARAEPGLSCRRVA
Trigger: CGCAACTCTGCGGCAACTGAGCCCTGGCTCCGCCCTGGCACTTCAGAAAGTCTGAAACGGTTCATGGCAGAGCATCTGAATGAAGAACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS TCA 90 bp GCTTCCCAGGCCCCTTATGCTGTTCTTCATTCAGATGCTCTGCCATaGACCGTTTCAGACTTTCTGAAGTGCCAGGGCGGAGCCAGGGCT +
Preference number: 5 (lower is better)
Translates to: ASQAPYAVLHSDALP*TVSDFLKCQGGARA
Trigger: AGCCCTGGCTCCGCCCTGGCACTTCAGAAAGTCTGAAACGGTTCATGGCAGAGCATCTGAATGAAGAACAGCATAAGGGGCCTGGGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 90 bp AACGTGCCTGGCTTCCCAGGCCCCTTATGCTGTTCTTCATTCAGATaGTCTGCCATGAACCGTTTCAGACTTTCTGAAGTGCCAGGGCGG +
Preference number: 5 (lower is better)
Translates to: NVPGFPGPLCCSSFR*SAMNRFRLSEVPGR
Trigger: CCGCCCTGGCACTTCAGAAAGTCTGAAACGGTTCATGGCAGAGCATCTGAATGAAGAACAGCATAAGGGGCCTGGGAAGCCAGGCACGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 90 bp GAGAGGCCCTGCCAAGTAAACGTGCCTGGCTTCCCAGGCCCCTTATaGTGTTCTTCATTCAGATGCTCTGCCATGAACCGTTTCAGACTT +
Preference number: 5 (lower is better)
Translates to: ERPCQVNVPGFPGPL*CSSFRCSAMNRFRL
Trigger: AAGTCTGAAACGGTTCATGGCAGAGCATCTGAATGAAGAACAGCATAAGGGGCCTGGGAAGCCAGGCACGTTTACTTGGCAGGGCCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS TCA 90 bp TGTGCATCCTATTCAAATCAGTTATCAGATTTCCTTTGGCGTCTCTaGGAGGAGCACCACCTCCGCCCTTCCCCCAGGGGTTGTAGATCC +
Preference number: 5 (lower is better)
Translates to: CASYSNQLSDFLWRL*EEHHLRPSPRGCRS
Trigger: GGATCTACAACCCCTGGGGGAAGGGCGGAGGTGGTGCTCCTCTCAGAGACGCCAAAGGAAATCTGATAACTGATTTGAATAGGATGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS GCA 90 bp CTTAATTCAATTTCACCATCTAGCTGTCGGTACAGGCCCTCCTCTTaGCGGCTTAGCCAGGGTCCCTCTGAATGTGTGTATGCAGTCTGT +
Preference number: 5 (lower is better)
Translates to: LNSISPSSCRYRPSS*RLSQGPSECVYAVC
Trigger: ACAGACTGCATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTACCGACAGCTAGATGGTGAAATTGAATTAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000186294.7
CDS GCA 90 bp TGTTTGGCTCTTCTGGGACATCATCCCCATCCACATACCCTCGTCTaGTCCCATGCGGCCTGCCATTTGTATACACTCTCAAAAGTCTTC +
Preference number: 5 (lower is better)
Translates to: CLALLGHHPHPHTLV*SHAACHLYTLSKVF
Trigger: GAAGACTTTTGAGAGTGTATACAAATGGCAGGCCGCATGGGAGCAGACGAGGGTATGTGGATGGGGATGATGTCCCAGAAGAGCCAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS-3UTR CAA 90 bp AGTATTCACAGCTGGCGGTGCTACCTGGTGAGTGACAGGGGCAGAGACATGAGGTTCTCCTTCCTTCTCTaGGTAAGTTCTCGATCTTCA +
Preference number: 5 (lower is better)
Translates to: SIHSWRCYLVSDRGRDMRFSFLL*VSSRSS
Trigger: TGAAGATCGAGAACTTACCAAGAGAAGGAAGGAGAA...CCTCATGTCTCTGCCCCTGTCACTCACCAGGTAGCACCGCCAGCTGTGAATACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000188449.7
CDS-3UTR CAA 90 bp CATAGTATTCAAGATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGGAGCCAGGGCTCAGTaGCCGCAGAGTTGCGTCCAT +
Preference number: 5 (lower is better)
Translates to: HSIQDTGERSTVKGTTGSGARAQ*PQSCVH
Trigger: ATGGACGCAACTCTGCGGCAACTGAGCCCTGGCTCC...GGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp TGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTCCCTCTTCTGCACGGAGTaGGTTCTTCCTTGCAGGCAC +
Preference number: 5 (lower is better)
Translates to: CSRLLSKSSPFNLFLLRSLFCTE*VLPCRH
Trigger: GTGCCTGCAAGGAAGAACCAACTCCGTGCAGAAGAG...GGAACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS GCA 90 bp TCTTCTGGGACATCATCCCCATCCACATACCCTCGTCTGCTCCCATaGGGCCTGCCATTTGTATACACTCTCAAAAGTCTTCTATCAAAA +
Preference number: 5 (lower is better)
Translates to: SSGTSSPSTYPRLLP*GLPFVYTLKSLLSK
Trigger: TTTTGATAGAAGACTTTTGAGAGTGTATACAAATGGCAGGCCGCATGGGAGCAGACGAGGGTATGTGGATGGGGATGATGTCCCAGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 90 bp TGTCATCTCTGGGCATTCTGCGCCCTTGTGCATTATCAGTGCAGATaGTGTCCAAATCAGCTCCTGCATCTCTCCGCATCTTTATTCTAT +
Preference number: 5 (lower is better)
Translates to: CHLWAFCALVHYQCR*CPNQLLHLSASLFY
Trigger: ATAGAATAAAGATGCGGAGAGATGCAGGAGCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGCCCAGAGATGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS-3UTR CAA 90 bp CATAGTATTCAAGATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGGAGTTGGTTCTTCCTaGCAGGCACTGGAGGAGACT +
Preference number: 5 (lower is better)
Translates to: HSIQDTGERSTVKGTTGSGVGSS*QALEET
Trigger: AGTCTCCTCCAGTGCCTGCAAGGAAGAACCAACTCC...GGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp CATAGTATTCAAGATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCCTCTTCTGCACGGAGTaGGTTCTTCCTTGCAGGCAC +
Preference number: 5 (lower is better)
Translates to: HSIQDTGERSTVKGTTGSLFCTE*VLPCRH
Trigger: GTGCCTGCAAGGAAGAACCAACTCCGTGCAGAAGAG...GGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS TCA 90 bp TCCATCATCACTCAGGTGTCTCATGATGTCATCAGGATCAACCAGTaGACCCTCATCATCTGTGTTAGTGGGTTTCTTCTGCTGCTCAGT +
Preference number: 5 (lower is better)
Translates to: SIITQVSHDVIRINQ*TLIICVSGFLLLLS
Trigger: ACTGAGCAGCAGAAGAAACCCACTAACACAGATGATGAGGGTTCACTGGTTGATCCTGATGACATCATGAGACACCTGAGTGATGATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 90 bp CTAACTGAGGAATTTGAACTGGTTGCTTACCATTCTGCGCCCTTGTaGATTATCAGTGCAGATGGTGTCCAAATCAGCTCCTGCATCTCT +
Preference number: 5 (lower is better)
Translates to: LTEEFELVAYHSAPL*IISADGVQISSCIS
Trigger: AGAGATGCAGGAGCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGGTAAGCAACCAGTTCAAATTCCTCAGTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS CCA 90 bp CTTGGTAAGTTCTCGATCTTCACCTCCAAAGAGCATGCCTGCAAATaGACTTGTGATATCGAGATCAGCAGATCTGGGTGGTCCATTACA +
Preference number: 5 (lower is better)
Translates to: LGKFSIFTSKEHACK*TCDIEISRSGWSIT
Trigger: TGTAATGGACCACCCAGATCTGCTGATCTCGATATCACAAGTCCATTTGCAGGCATGCTCTTTGGAGGTGAAGATCGAGAACTTACCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000188449.7
CDS CCA 90 bp ACTGGTTGCTTACCATTCTGCGCCCTTGTGCATTATCAGTGCAGATaGTGTCCAAATCAGCTCCTGCATCTCTCCGCATCTTTATTCTAT +
Preference number: 5 (lower is better)
Translates to: TGCLPFCALVHYQCR*CPNQLLHLSASLFY
Trigger: ATAGAATAAAGATGCGGAGAGATGCAGGAGCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGGTAAGCAACCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CAA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTCTTTCCAATTCTGCTTaGTCTTTGGCCAGTTTCGCT +
Preference number: 5 (lower is better)
Translates to: SLEATGNRNPDCGSESIALSNSA*SLASFA
Trigger: AGCGAAACTGGCCAAAGACAAAGCAGAATTGGAAAG...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp CATAGTATTCAAGATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCATTCCTAAGGGTCCCTaGGGCTGTTGTTGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: HSIQDTGERSTVKGTTGSIPKGP*GCCWLL
Trigger: AAGCAGCCAACAACAGCCCAAGGGACCCTTAGGAAT...GGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATCTTGAATACTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp GATACAGGTGAACGTTCCACTGTAAAAGGCACTACTGGATCCGAGAGGGTTTATCTTTCCAATTCTGCTTaGTCTTTGGCCAGTTTCGCT +
Preference number: 5 (lower is better)
Translates to: DTGERSTVKGTTGSERVYLSNSA*SLASFA
Trigger: AGCGAAACTGGCCAAAGACAAAGCAGAATTGGAAAG...ATAAACCCTCTCGGATCCAGTAGTGCCTTTTACAGTGGAACGTTCACCTGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTAGTTTCAATCTTTCCTaGGCAGATAACCGCTCATCA +
Preference number: 5 (lower is better)
Translates to: SLEATGNRNPDCGSESIASFNLS*ADNRSS
Trigger: TGATGAGCGGTTATCTGCCAAGGAAAGATTGAAACT...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp CAGCAACAGCAAGTATATAAAACAAGTCTCTCTGAATTGTTTCTCCACAATGCTACTCTTGCTGAATCCTaGCCCTCTGCTCCGCAAGCC +
Preference number: 5 (lower is better)
Translates to: QQQQVYKTSLSELFLHNATLAES*PSAPQA
Trigger: GGCTTGCGGAGCAGAGGGCAAGGATTCAGCAAGAGT...AGCATTGTGGAGAAACAATTCAGAGAGACTTGTTTTATATACTTGCTGTTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATATCTTCTGACAGGGGCTaGTACCCGATGTCTAGCCAT +
Preference number: 5 (lower is better)
Translates to: CVHSSSPPLNGKHILMHISSDRG*YPMSSH
Trigger: ATGGCTAGACATCGGGTACAAGCCCCTGTCAGAAGA...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS TCA 90 bp GGACTTGTGATATCGAGATCAGCAGATCTGGGTGGTCCATTACAGTaGACACTTTTATTTTCAGCAGCTGAGATCTGTGTGTTTGGCTCT +
Preference number: 5 (lower is better)
Translates to: GLVISRSADLGGPLQ*TLLFSAAEICVFGS
Trigger: AGAGCCAAACACACAGATCTCAGCTGCTGAAAATAAAAGTGTTCACTGTAATGGACCACCCAGATCTGCTGATCTCGATATCACAAGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS-3UTR CAA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGATTCCTAAGGGTCCCTaGGGCTGTTGTTGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGIPKGP*GCCWLL
Trigger: AAGCAGCCAACAACAGCCCAAGGGACCCTTAGGAAT...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp TCTTTGGAAGCCACTGGCAACAGGAATCCAGACTGTGGATCTGAATCCATTGCTTACTTCTTCCTTTGTTaGTTTAAGCGGTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: SLEATGNRNPDCGSESIAYFFLC*FKRSSA
Trigger: AGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTA...AGCAATGGATTCAGATCCACAGTCTGGATTCCTGTTGCCAGTGGCTTCCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCTTCTCCTTCCTTCTCTaGGTAAGTTCTCGATCTTCA +
Preference number: 5 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLFSFLL*VSSRSS
Trigger: TGAAGATCGAGAACTTACCAAGAGAAGGAAGGAGAA...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp TGTGTACACTCTAGCTCACCACCTCTTAATGGCAAGCACATTTTAATGCACATACTCCTGCAAAGCTTCTaGGTAAGACTGAAGCGACTG +
Preference number: 5 (lower is better)
Translates to: CVHSSSPPLNGKHILMHILLQSF*VRLKRL
Trigger: CAGTCGCTTCAGTCTTACCAAGAAGCTTTGCAGGAG...TATGTGCATTAAAATGTGCTTGCCATTAAGAGGTGGTGAGCTAGAGTGTACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS TCA 90 bp ACCTGTCTGACTTTTTCTGTGGATTCTGCCTTACCCCTGAGAAACTaGTTGTATTCTCGGTTGCGTTCAAGTTTCAATCTTTCCTTGGCA +
Preference number: 5 (lower is better)
Translates to: TCLTFSVDSALPLRN*LYSRLRSSFNLSLA
Trigger: TGCCAAGGAAAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAATCCACAGAAAAAGTCAGACAGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000149214.3
ENSMUST00000186294.7
CDS TCA 90 bp AAGCGACTGTGTAGAAGGTTTTGGCTTATCCTCAAAGACCAGTCCTaGATTCCTGAGTCCATCACTAAGAACTTTCTGTTCATTCTGTCC +
Preference number: 5 (lower is better)
Translates to: KRLCRRFWLILKDQS*IPESITKNFLFILS
Trigger: GGACAGAATGAACAGAAAGTTCTTAGTGATGGACTCAGGAATTCAGGACTGGTCTTTGAGGATAAGCCAAAACCTTCTACACAGTCGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 90 bp CGCCTTTCCCTTCATCTCCATGTACGGTGGATCACTTTCCAATTCTaGTTTGTCTTTGGCCAGTTTCGCTTTTTGCTCTTCAATAAATTC +
Preference number: 5 (lower is better)
Translates to: RLSLHLHVRWITFQF*FVFGQFRFLLFNKF
Trigger: GAATTTATTGAAGAGCAAAAAGCGAAACTGGCCAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAGGGAAAGGCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000155974.8
ENSMUST00000191012.7
CDS-3UTR CAA 90 bp GTCAGTCATCTGGGAAGCTATGATCCAAAACAACCTGAGATTTCTTTGGAAGCCAGTTTCAATCTTTCCTaGGCAGATAACCGCTCATCA +
Preference number: 5 (lower is better)
Translates to: VSHLGSYDPKQPEISLEASFNLS*ADNRSS
Trigger: TGATGAGCGGTTATCTGCCAAGGAAAGATTGAAACT...GGCTTCCAAAGAAATCTCAGGTTGTTTTGGATCATAGCTTCCCAGATGACTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GCTAGTAACAGTGTATTGTTTCACAGTGCTGTGTACACTCTAGCTCACCACCTCTATCTTCATATGTTCTaGCATCTGGGTTATGGTAGG +
Preference number: 5 (lower is better)
Translates to: ASNSVLFHSAVYTLAHHLYLHMF*HLGYGR
Trigger: CCTACCATAACCCAGATGCAAGAACATATGAAGATA...GAGGTGGTGAGCTAGAGTGTACACAGCACTGTGAAACAATACACTGTTACTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCGGAGTTGGTTCTTCCTaGCAGGCACTGGAGGAGACT +
Preference number: 5 (lower is better)
Translates to: IVFNNRICLTISTNKSTIGVGSS*QALEET
Trigger: AGTCTCCTCCAGTGCCTGCAAGGAAGAACCAACTCC...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CAA 90 bp AGGCAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTTCCCTTGGGCTGTTGTaGGCTGCTTGGTGGAATGTT +
Preference number: 5 (lower is better)
Translates to: RQKNVTFNHGSWMITNPFSLGLL*AAWWNV
Trigger: AACATTCCACCAAGCAGCCAACAACAGCCCAAGGGA...AAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAATTCCTAAGGGTCCCTaGGGCTGTTGTTGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRIPKGP*GCCWLL
Trigger: AAGCAGCCAACAACAGCCCAAGGGACCCTTAGGAAT...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp TCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCAGCTTGTTGTTATCAGATTTCCTTaGGCGTCTCTGAGAGGAGCA +
Preference number: 5 (lower is better)
Translates to: SLCSYGMCNYRYENEQLVVIRFP*ASLRGA
Trigger: TGCTCCTCTCAGAGACGCCAAAGGAAATCTGATAAC...AACAAGCTGCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp AGGCAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTCTCCTCCTCATACTCTaGCTGAATCCTTGCCCTCTG +
Preference number: 5 (lower is better)
Translates to: RQKNVTFNHGSWMITNPFLLLIL*LNPCPL
Trigger: CAGAGGGCAAGGATTCAGCAAGAGTATGAGGAGGAG...AAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCTCTTCTGACAGGGGCTaGTACCCGATGTCTAGCCAT +
Preference number: 5 (lower is better)
Translates to: IVFNNRICLTISTNKSTISSDRG*YPMSSH
Trigger: ATGGCTAGACATCGGGTACAAGCCCCTGTCAGAAGA...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CAA 90 bp TGTGCAGCCGACTACTGTCAAAATCTAGTCCTTTTAATTTGTTCCTCCTGCGTTTGTCAAATATATCCATaGGGTTCCTCTCTCTTTTCC +
Preference number: 5 (lower is better)
Translates to: CAADYCQNLVLLICSSCVCQIYP*GSSLFS
Trigger: GGAAAAGAGAGAGGAACCCAATGGATATATTTGACA...AACGCAGGAGGAACAAATTAAAAGGACTAGATTTTGACAGTAGTCGGCTGCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS-3UTR CAA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTCATGCGGCCTGCCATTaGTATACACTCTCAAAAGTC +
Preference number: 5 (lower is better)
Translates to: QKNVTFNHGSWMITNPFAHAACH*YTLSKV
Trigger: GACTTTTGAGAGTGTATACAAATGGCAGGCCGCATG...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTTTCATTTTTCAACCTTaGCTCCTCCTCCTTCTCCCT +
Preference number: 5 (lower is better)
Translates to: NIKVGPQARHSIQDTGERFIFQP*LLLLLP
Trigger: AGGGAGAAGGAGGAGGAGCAAAGGTTGAAAAATGAA...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTGGTGGAGGGAAGGCATaGTCTTCAATAACAGGATAT +
Preference number: 5 (lower is better)
Translates to: NIKVGPQARHSIQDTGERGGGKA*SSITGY
Trigger: ATATCCTGTTATTGAAGACAATGCCTTCCCTCCACC...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp ATTGTCTTCAATAACAGGATATGTCTCACCATAAGCACCAATAAAAGCACTATCAGGAATTTGAACTGGTaGCTTACCATTCTGCGCCCT +
Preference number: 5 (lower is better)
Translates to: IVFNNRICLTISTNKSTIRNLNW*LTILRP
Trigger: AGGGCGCAGAATGGTAAGCAACCAGTTCAAATTCCT...GATAGTGCTTTTATTGGTGCTTATGGTGAGACATATCCTGTTATTGAAGACAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS CCA 90 bp TCATTCCTGAACCATAGTATACAATATTGGGATCCAGTGTATTTCTaGCACCGTAAAAATAGTACGCATCATCGTAAGGAGTTCGATAGT +
Preference number: 5 (lower is better)
Translates to: SFLNHSIQYWDPVYF*HRKNSTHHRKEFDS
Trigger: ACTATCGAACTCCTTACGATGATGCGTACTATTTTTACGGTGCCAGAAATACACTGGATCCCAATATTGTATACTATGGTTCAGGAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS-3UTR CAA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGACTTTCCAATTCTGCTTaGTCTTTGGCCAGTTTCGCT +
Preference number: 5 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRLSNSA*SLASFA
Trigger: AGCGAAACTGGCCAAAGACAAAGCAGAATTGGAAAG...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCCTTTCCAATTCTGCTTaGTCTTTGGCCAGTTTCGCT +
Preference number: 5 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSLSNSA*SLASFA
Trigger: AGCGAAACTGGCCAAAGACAAAGCAGAATTGGAAAG...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCGTTCTTTCTTCCTTCTaGCTTCTCTTTCCCGAATCT +
Preference number: 5 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSVLSSF*LLFPES
Trigger: AGATTCGGGAAAGAGAAGCAAGAAGGAAGAAAGAAC...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS GCA 90 bp ATTTTGGTCTATAGATACAACAGCCCTTTTATCTTCATATGTTCTTaGATCTGGGTTATGGTAGGCATCTATATTCTGTCTGTGCATCCT +
Preference number: 5 (lower is better)
Translates to: ILVYRYNSPFIFICS*IWVMVGIYILSVHP
Trigger: AGGATGCACAGACAGAATATAGATGCCTACCATAACCCAGATGCAAGAACATATGAAGATAAAAGGGCTGTTGTATCTATAGACCAAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS CCA 90 bp GTCTATAGATACAACAGCCCTTTTATCTTCATATGTTCTTGCATCTaGGTTATGGTAGGCATCTATATTCTGTCTGTGCATCCTATTCAA +
Preference number: 5 (lower is better)
Translates to: VYRYNSPFIFICSCI*VMVGIYILSVHPIQ
Trigger: TTGAATAGGATGCACAGACAGAATATAGATGCCTACCATAACCCAGATGCAAGAACATATGAAGATAAAAGGGCTGTTGTATCTATAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp AGGCAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTAGTTTCAATCTTTCCTaGGCAGATAACCGCTCATCA +
Preference number: 5 (lower is better)
Translates to: RQKNVTFNHGSWMITNPFSFNLS*ADNRSS
Trigger: TGATGAGCGGTTATCTGCCAAGGAAAGATTGAAACT...AAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTGCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCAGTTTCAATCTTTCCTaGGCAGATAACCGCTCATCA +
Preference number: 5 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSSFNLS*ADNRSS
Trigger: TGATGAGCGGTTATCTGCCAAGGAAAGATTGAAACT...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAAGTTTCAATCTTTCCTaGGCAGATAACCGCTCATCA +
Preference number: 5 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRSFNLS*ADNRSS
Trigger: TGATGAGCGGTTATCTGCCAAGGAAAGATTGAAACT...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCTACTTCTTCCTTTGTTaGTTTAAGCGGTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSYFFLC*FKRSSA
Trigger: AGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTA...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp ATCACAAATCCCTTTGCTCCTATGGAATGTGTAACTACAGATATGAAAATGAGCCTAGGTTCTCAGCATTaGAAGTGGCTAAATTTTGGT +
Preference number: 5 (lower is better)
Translates to: ITNPFAPMECVTTDMKMSLGSQH*KWLNFG
Trigger: ACCAAAATTTAGCCACTTCAAATGCTGAGAACCTAG...GCTCATTTTCATATCTGTAGTTACACATTCCATAGGAGCAAAGGGATTTGTGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp AATATTAAAGTAGGGCCACAAGCAAGACATAGTATTCAAGATACAGGTGAACGTTGTCAAATATATCCATaGGGTTCCTCTCTCTTTTCC +
Preference number: 5 (lower is better)
Translates to: NIKVGPQARHSIQDTGERCQIYP*GSSLFS
Trigger: GGAAAAGAGAGAGGAACCCAATGGATATATTTGACA...ACGTTCACCTGTATCTTGAATACTATGTCTTGCTTGTGGCCCTACTTTAATATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp CAGAAAAATGTAACATTTAATCATGGCTCATGGATGATCACAAATCCCTTTGCTTCTAGTCCTTTTAATTaGTTCCTCCTGCGTTCCCTT +
Preference number: 5 (lower is better)
Translates to: QKNVTFNHGSWMITNPFASSPFN*FLLRSL
Trigger: AAGGGAACGCAGGAGGAACAAATTAAAAGGACTAGA...AGCAAAGGGATTTGTGATCATCCATGAGCCATGATTAAATGTTACATTTTTCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS-3UTR CAA 90 bp TTAACATCTAAGATTAGGATGCCTAGCAACCTAGTTTTAACTTACTGCGTAGGGGTAAATACCTGCCATTaGTATACACTCTCAAAAGTC +
Preference number: 5 (lower is better)
Translates to: LTSKIRMPSNLVLTYCVGVNTCH*YTLSKV
Trigger: GACTTTTGAGAGTGTATACAAATGGCAGGTATTTAC...CCCTACGCAGTAAGTTAAAACTAGGTTGCTAGGCATCCTAATCTTAGATGTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS GCA 90 bp GTAATTCCAAATGCTAAATCTTTTTCTCGTCTCTTCTTCTTCTGTTaGTCAGCTATCTGTTCTAGTAGTTCTTGCCTATATTTCTCCTTC +
Preference number: 5 (lower is better)
Translates to: VIPNAKSFSRLFFFC*SAICSSSSCLYFSF
Trigger: GAAGGAGAAATATAGGCAAGAACTACTAGAACAGATAGCTGAGCAACAGAAGAAGAAGAGACGAGAAAAAGATTTAGCATTTGGAATTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000188449.7
CDS-3UTR CAA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCTACTTCTTCCTTTGTTaGTTTAAGCGGTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSYFFLC*FKRSSA
Trigger: AGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTA...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTATACTTCTTCCTTTGTTaGTTTAAGCGGTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: GAFPELQTIKIQLKETRVYFFLC*FKRSSA
Trigger: AGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTA...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGATACTTCTTCCTTTGTTaGTTTAAGCGGTCTTCTGCT +
Preference number: 5 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRYFFLC*FKRSSA
Trigger: AGCAGAAGACCGCTTAAACAAACAAAGGAAGAAGTA...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGATTTCTTTCTCTTTGCTaGTGTAATGCCCTGAGTAAG +
Preference number: 5 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRFLSLC*CNALSK
Trigger: CTTACTCAGGGCATTACACAAGCAAAGAGAAAGAAA...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp AGAATGTTTCCATTCACTTTTAGATTAAGGGGATACACTTTACCACTTTCTAGCGTAAATACCTGCCATTaGTATACACTCTCAAAAGTC +
Preference number: 5 (lower is better)
Translates to: RMFPFTFRLRGYTLPLSSVNTCH*YTLSKV
Trigger: GACTTTTGAGAGTGTATACAAATGGCAGGTATTTAC...GCTAGAAAGTGGTAAAGTGTATCCCCTTAATCTAAAAGTGAATGGAAACATTCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GGAGCATTTCCTGAACTACAAACAATTAAGATTCAGCTCAAAGAAACTAGAGTAGTAAATACCTGCCATTaGTATACACTCTCAAAAGTC +
Preference number: 5 (lower is better)
Translates to: GAFPELQTIKIQLKETRVVNTCH*YTLSKV
Trigger: GACTTTTGAGAGTGTATACAAATGGCAGGTATTTAC...TACTCTAGTTTCTTTGAGCTGAATCTTAATTGTTTGTAGTTCAGGAAATGCTCC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118263.8
ENSMUST00000122156.8
CDS-3UTR CAA 90 bp GTTAAGCTGAGACAAGAAATCCCCTCTTTAAGAATGTTTCCATTCACTTTTAGAGTAAATACCTGCCATTaGTATACACTCTCAAAAGTC +
Preference number: 5 (lower is better)
Translates to: VKLRQEIPSLRMFPFTFRVNTCH*YTLSKV
Trigger: GACTTTTGAGAGTGTATACAAATGGCAGGTATTTAC...TCTAAAAGTGAATGGAAACATTCTTAAAGAGGGGATTTCTTGTCTCAGCTTAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
CDS GCA 72 bp ATCTCGTCGTCACTGTCCAGGTGCAGCAGCCGCCCCTaGAAACGCCTCTCCTCGCTCCGGAGCTGCTTCCTC +
Preference number: 6 (lower is better)
Translates to: ISSSLSRCSSRP*KRLSSLRSCFL
Trigger: GAGGAAGCAGCTCCGGAGCGAGGAGAGGCGTTTGCAGGGGCGGCTGCTGCACCTGGACAGTGACGACGAGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000187226.7
CDS CCA 72 bp GAGGCGGGGGTGGATTCAGAGGCACAGGCAGAACCCTaGGATGCGCCAGTTCACCAAGGGTGCTGCCGAGTC +
Preference number: 6 (lower is better)
Translates to: EAGVDSEAQAEP*DAPVHQGCCRV
Trigger: GACTCGGCAGCACCCTTGGTGAACTGGCGCATCCCAGGGTTCTGCCTGTGCCTCTGAATCCACCCCCGCCTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 72 bp CACCCGCTCCCCGTTAGCCCTGCGGGCTCTTCTCTCTaGGACACCAGCGCTGCCAGAAAGGCTTGGATGTTC +
Preference number: 6 (lower is better)
Translates to: HPLPVSPAGSSL*DTSAARKAWMF
Trigger: GAACATCCAAGCCTTTCTGGCAGCGCTGGTGTCCCAGAGAGAAGAGCCCGCAGGGCTAACGGGGAGCGGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000186294.7
CDS CAA 72 bp GTGCCAGGGCGGAGCCAGGGCTCAGTTGCCGCAGAGTaGCGTCCATCATCACTCAGGTGTCTCATGATGTCA +
Preference number: 6 (lower is better)
Translates to: VPGRSQGSVAAE*RPSSLRCLMMS
Trigger: TGACATCATGAGACACCTGAGTGATGATGGACGCAACTCTGCGGCAACTGAGCCCTGGCTCCGCCCTGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CAA 72 bp GACTTTCTGAAGTGCCAGGGCGGAGCCAGGGCTCAGTaGCCGCAGAGTTGCGTCCATCATCACTCAGGTGTC +
Preference number: 6 (lower is better)
Translates to: DFLKCQGGARAQ*PQSCVHHHSGV
Trigger: GACACCTGAGTGATGATGGACGCAACTCTGCGGCAACTGAGCCCTGGCTCCGCCCTGGCACTTCAGAAAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp CAGGCAGAACCCTGGGATGCGCCAGTTCACCAAGGGTaGTGCCGAGTCCACTGTGCAAGTCTTCATTGTGAG +
Preference number: 6 (lower is better)
Translates to: QAEPWDAPVHQG*CRVHCASLHCE
Trigger: CTCACAATGAAGACTTGCACAGTGGACTCGGCAGCACCCTTGGTGAACTGGCGCATCCCAGGGTTCTGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 72 bp CAAGTCTTCATTGTGAGAAGGGGCGGAATGAACTGGTaGGACGGATGGGCTAGACGGGGCAGAGAAGGGAGG +
Preference number: 6 (lower is better)
Translates to: QVFIVRRGGMNW*DGWARRGREGR
Trigger: CCTCCCTTCTCTGCCCCGTCTAGCCCATCCGTCCCACCAGTTCATTCCGCCCCTTCTCACAATGAAGACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 72 bp GTGCAAGTCTTCATTGTGAGAAGGGGCGGAATGAACTaGTGGGACGGATGGGCTAGACGGGGCAGAGAAGGG +
Preference number: 6 (lower is better)
Translates to: VQVFIVRRGGMN*WDGWARRGREG
Trigger: CCCTTCTCTGCCCCGTCTAGCCCATCCGTCCCACCAGTTCATTCCGCCCCTTCTCACAATGAAGACTTGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 72 bp CTCTTCTGCACGGAGTTGGTTCTTCCTTGCAGGCACTaGAGGAGACTGTGCCCGGGACATGGAGCTTTCGTG +
Preference number: 6 (lower is better)
Translates to: LFCTELVLPCRH*RRLCPGHGAFV
Trigger: CACGAAAGCTCCATGTCCCGGGCACAGTCTCCTCCAGTGCCTGCAAGGAAGAACCAACTCCGTGCAGAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000187226.7
CDS TCA 72 bp ATTCAGATGCTCTGCCATGAACCGTTTCAGACTTTCTaGAGTGCCAGGGCGGAGCCAGGGCTCAGTTGCCGC +
Preference number: 6 (lower is better)
Translates to: IQMLCHEPFQTF*SARAEPGLSCR
Trigger: GCGGCAACTGAGCCCTGGCTCCGCCCTGGCACTTCAGAAAGTCTGAAACGGTTCATGGCAGAGCATCTGAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp GCAGAACCCTGGGATGCGCCAGTTCACCAAGGGTGCTaGCGAGTCCACTGTGCAAGTCTTCATTGTGAGAAG +
Preference number: 6 (lower is better)
Translates to: AEPWDAPVHQGC*RVHCASLHCEK
Trigger: CTTCTCACAATGAAGACTTGCACAGTGGACTCGGCAGCACCCTTGGTGAACTGGCGCATCCCAGGGTTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp CCGCTCCTGCTCCTCCTCATACTCTTGCTGAATCCTTaGCCTCTGCTCCGCAAGCCGCTTTTCTTCCTTCTC +
Preference number: 6 (lower is better)
Translates to: PLLLLLILLLNP*PLLRKPLFFLL
Trigger: GAGAAGGAAGAAAAGCGGCTTGCGGAGCAGAGGGCAAGGATTCAGCAAGAGTATGAGGAGGAGCAGGAGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 72 bp GTACGCATCATCGTAAGGAGTTCGATAGTTAGAAGCTaGAGGGGCAAGGAGCGGAGGCGGGGGTGGATTCAG +
Preference number: 6 (lower is better)
Translates to: VRIIVRSSIVRS*RGKERRRGWIQ
Trigger: CTGAATCCACCCCCGCCTCCGCTCCTTGCCCCTCCAGCTTCTAACTATCGAACTCCTTACGATGATGCGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CAA 90 bp CTTTCTGAAGTGCCAGGGCGGAGCCAGGGCTCAGTTGCCGCAGAGTaGCGTCCATCATCACTCAGGTGTCTCATGATGTCATCAGGATCA +
Preference number: 6 (lower is better)
Translates to: LSEVPGRSQGSVAAE*RPSSLRCLMMSSGS
Trigger: TGATCCTGATGACATCATGAGACACCTGAGTGATGATGGACGCAACTCTGCGGCAACTGAGCCCTGGCTCCGCCCTGGCACTTCAGAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 72 bp ATGTGCAGCAGAGAGGCCCTGCCAAGTAAACGTGCCTaGCTTCCCAGGCCCCTTATGCTGTTCTTCATTCAG +
Preference number: 6 (lower is better)
Translates to: MCSREALPSKRA*LPRPLMLFFIQ
Trigger: CTGAATGAAGAACAGCATAAGGGGCCTGGGAAGCCAGGCACGTTTACTTGGCAGGGCCTCTCTGCTGCACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp ATTTCACCATCTAGCTGTCGGTACAGGCCCTCCTCTTaGCGGCTTAGCCAGGGTCCCTCTGAATGTGTGTAT +
Preference number: 6 (lower is better)
Translates to: ISPSSCRYRPSS*RLSQGPSECVY
Trigger: ATACACACATTCAGAGGGACCCTGGCTAAGCCGGCAAGAGGAGGGCCTGTACCGACAGCTAGATGGTGAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000149214.3
ENSMUST00000186294.7
CDS GCA 72 bp CATCTCTGGGCATTCTGCGCCCTTGTGCATTATCAGTaGAGATGGTGTCCAAATCAGCTCCTGCATCTCTCC +
Preference number: 6 (lower is better)
Translates to: HLWAFCALVHYQ*RWCPNQLLHLS
Trigger: GGAGAGATGCAGGAGCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGCCCAGAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp TGCCAAGTAAACGTGCCTGGCTTCCCAGGCCCCTTATaGTGTTCTTCATTCAGATGCTCTGCCATGAACCGT +
Preference number: 6 (lower is better)
Translates to: CQVNVPGFPGPL*CSSFRCSAMNR
Trigger: ACGGTTCATGGCAGAGCATCTGAATGAAGAACAGCATAAGGGGCCTGGGAAGCCAGGCACGTTTACTTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS TCA 72 bp GCCCCTTATGCTGTTCTTCATTCAGATGCTCTGCCATaGACCGTTTCAGACTTTCTGAAGTGCCAGGGCGGA +
Preference number: 6 (lower is better)
Translates to: APYAVLHSDALP*TVSDFLKCQGG
Trigger: TCCGCCCTGGCACTTCAGAAAGTCTGAAACGGTTCATGGCAGAGCATCTGAATGAAGAACAGCATAAGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp GGTTGCTTACCATTCTGCGCCCTTGTGCATTATCAGTaGAGATGGTGTCCAAATCAGCTCCTGCATCTCTCC +
Preference number: 6 (lower is better)
Translates to: GCLPFCALVHYQ*RWCPNQLLHLS
Trigger: GGAGAGATGCAGGAGCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGGTAAGCAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS CCA 72 bp CAAATATATCCATTGGGTTCCTCTCTCTTTTCCTCATaGGGATCTCGTCGTCACTGTCCAGGTGCAGCAGCC +
Preference number: 6 (lower is better)
Translates to: QIYPLGSSLFSS*GSRRHCPGAAA
Trigger: GGCTGCTGCACCTGGACAGTGACGACGAGATCCCCATGAGGAAAAGAGAGAGGAACCCAATGGATATATTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000187226.7
CDS TCA 72 bp CCGCAGAGTTGCGTCCATCATCACTCAGGTGTCTCATaGTGTCATCAGGATCAACCAGTGAACCCTCATCAT +
Preference number: 6 (lower is better)
Translates to: PQSCVHHHSGVS*CHQDQPVNPHH
Trigger: ATGATGAGGGTTCACTGGTTGATCCTGATGACATCATGAGACACCTGAGTGATGATGGACGCAACTCTGCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp CCCCATCCACATACCCTCGTCTGCTCCCATGCGGCCTaGCATTTGTATACACTCTCAAAAGTCTTCTATCAA +
Preference number: 6 (lower is better)
Translates to: PHPHTLVCSHAA*HLYTLSKVFYQ
Trigger: TTGATAGAAGACTTTTGAGAGTGTATACAAATGGCAGGCCGCATGGGAGCAGACGAGGGTATGTGGATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp ACATCATCCCCATCCACATACCCTCGTCTGCTCCCATaGGGCCTGCCATTTGTATACACTCTCAAAAGTCTT +
Preference number: 6 (lower is better)
Translates to: TSSPSTYPRLLP*GLPFVYTLKSL
Trigger: AAGACTTTTGAGAGTGTATACAAATGGCAGGCCGCATGGGAGCAGACGAGGGTATGTGGATGGGGATGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp GGCTTCCCAGGCCCCTTATGCTGTTCTTCATTCAGATaGTCTGCCATGAACCGTTTCAGACTTTCTGAAGTG +
Preference number: 6 (lower is better)
Translates to: GFPGPLCCSSFR*SAMNRFRLSEV
Trigger: CACTTCAGAAAGTCTGAAACGGTTCATGGCAGAGCATCTGAATGAAGAACAGCATAAGGGGCCTGGGAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CAA 72 bp CTGTGCATCCTATTCAAATCAGTTATCAGATTTCCTTaGGCGTCTCTGAGAGGAGCACCACCTCCGCCCTTC +
Preference number: 6 (lower is better)
Translates to: LCILFKSVIRFP*ASLRGAPPPPF
Trigger: GAAGGGCGGAGGTGGTGCTCCTCTCAGAGACGCCAAAGGAAATCTGATAACTGATTTGAATAGGATGCACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12
CDS GCA 72 bp TGGGACACCAGCGCTGCCAGAAAGGCTTGGATGTTCTaGACCAGAAATGCCTACTTCTTCCTTTGTTTGTTT +
Preference number: 6 (lower is better)
Translates to: WDTSAARKAWMF*TRNAYFFLCLF
Trigger: AAACAAACAAAGGAAGAAGTAGGCATTTCTGGTGCAGAACATCCAAGCCTTTCTGGCAGCGCTGGTGTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000186294.7
CDS CCA 72 bp TTCTCGATCTTCACCTCCAAAGAGCATGCCTGCAAATaGACTTGTGATATCGAGATCAGCAGATCTGGGTGG +
Preference number: 6 (lower is better)
Translates to: FSIFTSKEHACK*TCDIEISRSGW
Trigger: CCACCCAGATCTGCTGATCTCGATATCACAAGTCCATTTGCAGGCATGCTCTTTGGAGGTGAAGATCGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000188449.7
CDS CAA 90 bp CTTCCTTCTTGCTTCTCTTTCCCGAATCTGCTCCTGCAAAGCTTCTaGGTAAGACTGAAGCGACTGTGTAGAAGGTTTTGGCTTATCCTC +
Preference number: 6 (lower is better)
Translates to: LPSCFSFPNLLLQSF*VRLKRLCRRFWLIL
Trigger: GAGGATAAGCCAAAACCTTCTACACAGTCGCTTCAGTCTTACCAAGAAGCTTTGCAGGAGCAGATTCGGGAAAGAGAAGCAAGAAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp GAATTTGAACTGGTTGCTTACCATTCTGCGCCCTTGTaGATTATCAGTGCAGATGGTGTCCAAATCAGCTCC +
Preference number: 6 (lower is better)
Translates to: EFELVAYHSAPL*IISADGVQISS
Trigger: GGAGCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGGTAAGCAACCAGTTCAAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS CAA 72 bp TGCTTCTCTTTCCCGAATCTGCTCCTGCAAAGCTTCTaGGTAAGACTGAAGCGACTGTGTAGAAGGTTTTGG +
Preference number: 6 (lower is better)
Translates to: CFSFPNLLLQSF*VRLKRLCRRFW
Trigger: CCAAAACCTTCTACACAGTCGCTTCAGTCTTACCAAGAAGCTTTGCAGGAGCAGATTCGGGAAAGAGAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CAA 72 bp GAGGAATTTGAACTGGTTGCTTACCATTCTGCGCCCTaGTGCATTATCAGTGCAGATGGTGTCCAAATCAGC +
Preference number: 6 (lower is better)
Translates to: EEFELVAYHSAP*CIISADGVQIS
Trigger: GCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGGTAAGCAACCAGTTCAAATTCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000187226.7
CDS TCA 72 bp GAAGGAGGTCTTTGGAGTTTGCTTGCAATTTTGTTCTaGAGAGCAGGAACTACAGGAGAAGGCTGTCTCAAG +
Preference number: 6 (lower is better)
Translates to: EGGLWSLLAILF*RAGTTGEGCLK
Trigger: CTTGAGACAGCCTTCTCCTGTAGTTCCTGCTCTTCAGAACAAAATTGCAAGCAAACTCCAAAGACCTCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000187226.7
CDS TCA 72 bp ACTCAGGTGTCTCATGATGTCATCAGGATCAACCAGTaGACCCTCATCATCTGTGTTAGTGGGTTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: TQVSHDVIRINQ*TLIICVSGFLL
Trigger: CAGAAGAAACCCACTAACACAGATGATGAGGGTTCACTGGTTGATCCTGATGACATCATGAGACACCTGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CCA 72 bp GTAAACTTAAGCCATATTCAATTCCTAAGGGTCCCTTaGGCTGTTGTTGGCTGCTTGGTGGAATGTTCTCCT +
Preference number: 6 (lower is better)
Translates to: VNLSHIQFLRVP*AVVGCLVECSP
Trigger: AGGAGAACATTCCACCAAGCAGCCAACAACAGCCCAAGGGACCCTTAGGAATTGAATATGGCTTAAGTTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000155974.8
ENSMUST00000186294.7
CDS CAA 72 bp AAAATCATTAGTGTCATCTCTGGGCATTCTGCGCCCTaGTGCATTATCAGTGCAGATGGTGTCCAAATCAGC +
Preference number: 6 (lower is better)
Translates to: KIISVISGHSAP*CIISADGVQIS
Trigger: GCTGATTTGGACACCATCTGCACTGATAATGCACAAGGGCGCAGAATGCCCAGAGATGACACTAATGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS CAA 72 bp CTCACCAAATGTGTTTCCCCGGGCAAAAGGAGAGCTTaGTGTTTGCAAAGGACTTATCAGATTTCCTTTGGC +
Preference number: 6 (lower is better)
Translates to: LTKCVSPGKRRA*CLQRTYQISFG
Trigger: GCCAAAGGAAATCTGATAAGTCCTTTGCAAACACAAAGCTCTCCTTTTGCCCGGGGAAACACATTTGGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000186294.7
CDS TCA 72 bp TGGTCCATTACAGTGAACACTTTTATTTTCAGCAGCTaGGATCTGTGTGTTTGGCTCTTCTGGGACATCATC +
Preference number: 6 (lower is better)
Translates to: WSITVNTFIFSS*DLCVWLFWDII
Trigger: GATGATGTCCCAGAAGAGCCAAACACACAGATCTCAGCTGCTGAAAATAAAAGTGTTCACTGTAATGGACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS GCA 72 bp TGCATTATCAGTGCAGATGGTGTCCAAATCAGCTCCTaGATCTCTCCGCATCTTTATTCTATTAAGCCTCTT +
Preference number: 6 (lower is better)
Translates to: CIISADGVQISS*ISPHLYSIKPL
Trigger: AAGAGGCTTAATAGAATAAAGATGCGGAGAGATGCAGGAGCTGATTTGGACACCATCTGCACTGATAATGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000187226.7
CDS TCA 72 bp TGTAGAAGGTTTTGGCTTATCCTCAAAGACCAGTCCTaGATTCCTGAGTCCATCACTAAGAACTTTCTGTTC +
Preference number: 6 (lower is better)
Translates to: CRRFWLILKDQS*IPESITKNFLF
Trigger: GAACAGAAAGTTCTTAGTGATGGACTCAGGAATTCAGGACTGGTCTTTGAGGATAAGCCAAAACCTTCTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
CDS TCA 72 bp GCTTTCGTGAATGAAGGAACTTATGATGGTGTCGACTaGAGGAGGTCTTTGGAGTTTGCTTGCAATTTTGTT +
Preference number: 6 (lower is better)
Translates to: AFVNEGTYDGVD*RRSLEFACNFV
Trigger: AACAAAATTGCAAGCAAACTCCAAAGACCTCCTTCAGTCGACACCATCATAAGTTCCTTCATTCACGAAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000187226.7
CDS CAA 90 bp TTTCCCTTCATCTCCATGTACGGTGGATCACTTTCCAATTCTGCTTaGTCTTTGGCCAGTTTCGCTTTTTGCTCTTCAATAAATTCATCC +
Preference number: 6 (lower is better)
Translates to: FPFISMYGGSLSNSA*SLASFAFCSSINSS
Trigger: GGATGAATTTATTGAAGAGCAAAAAGCGAAACTGGCCAAAGACAAAGCAGAATTGGAAAGTGATCCACCGTACATGGAGATGAAGGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000155974.8
ENSMUST00000191012.7
CDS TCA 72 bp ACTTTTTCTGTGGATTCTGCCTTACCCCTGAGAAACTaGTTGTATTCTCGGTTGCGTTCAAGTTTCAATCTT +
Preference number: 6 (lower is better)
Translates to: TFSVDSALPLRN*LYSRLRSSFNL
Trigger: AAGATTGAAACTTGAACGCAACCGAGAATACAATCAGTTTCTCAGGGGTAAGGCAGAATCCACAGAAAAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000071087.12
ENSMUST00000117415.8
ENSMUST00000118263.8
ENSMUST00000119714.8
ENSMUST00000122156.8
ENSMUST00000149214.3
ENSMUST00000186294.7
CDS GCA 72 bp AATGCTAAATCTTTTTCTCGTCTCTTCTTCTTCTGTTaGTCAGCTATCTGTTCTAGTAGTTCTTGCCTATAT +
Preference number: 6 (lower is better)
Translates to: NAKSFSRLFFFC*SAICSSSSCLY
Trigger: ATATAGGCAAGAACTACTAGAACAGATAGCTGAGCAACAGAAGAAGAAGAGACGAGAAAAAGATTTAGCATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071087.12
ENSMUST00000186294.7
ENSMUST00000188449.7
CDS GCA 72 bp TATAGATACAACAGCCCTTTTATCTTCATATGTTCTTaGATCTGGGTTATGGTAGGCATCTATATTCTGTCT +
Preference number: 6 (lower is better)
Translates to: YRYNSPFIFICS*IWVMVGIYILS
Trigger: AGACAGAATATAGATGCCTACCATAACCCAGATGCAAGAACATATGAAGATAAAAGGGCTGTTGTATCTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071087.12