Pregenerated sensors for CSNKA2IP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068167Ensembl transcript IDs: ENSMUST00000089279.5, ENSMUST00000209382.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGTCTTTGTTTGTCACTGAGTGAAGCAGTATTCTGGACCTTGGGGTaGCAAACAGCTGTGTTGATGGCCCGCGTGCTAGGATCACATCTA | + |
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Preference number: 5 (lower is better) Translates to: GLCLSLSEAVFWTLG*QTAVLMARVLGSHL Trigger: TAGATGTGATCCTAGCACGCGGGCCATCAACACAGCTGTTTGCCACCCCAAGGTCCAGAATACTGCTTCACTCAGTGACAAACAAAGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CCA 90 bp | GCCCGCGTGCTAGGATCACATCTAGCCACTATTTTAGGTTTAGGCTaGCACGTTGATAAACGCCGAGATGGCAGAAAAGAATGTGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: ARVLGSHLATILGLG*HVDKRRDGRKECGD Trigger: ATCACCACATTCTTTTCTGCCATCTCGGCGTTTATCAACGTGCCAGCCTAAACCTAAAATAGTGGCTAGATGTGATCCTAGCACGCGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS TCA 90 bp | TTTTCACATCTACTTTCCCATCGGTGCTGCTCTCGGGTGTTGGTATaGCAAAGAGGGTTGCGCATCGAGGATCTCTCTTTCCTGAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: FSHLLSHRCCSRVLV*QRGLRIEDLSFLKD Trigger: ATCTTTCAGGAAAGAGAGATCCTCGATGCGCAACCCTCTTTGTCATACCAACACCCGAGAGCAGCACCGATGGGAAAGTAGATGTGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS TCA 90 bp | GAGGCTTGCTACAGTCGGGTAGTGGTGAATTACGAGCCACTCGACTaGATTCAAGAGAAGATGAAGTTGGAGGAAAGCTGTTTCTTTGAA | + |
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Preference number: 5 (lower is better) Translates to: EACYSRVVVNYEPLD*IQEKMKLEESCFFE Trigger: TTCAAAGAAACAGCTTTCCTCCAACTTCATCTTCTCTTGAATTCAGTCGAGTGGCTCGTAATTCACCACTACCCGACTGTAGCAAGCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS GCA 90 bp | CCAGGACGAGGGTTTGGCTTTCCTCTCATTCTTCGAAAGAGAATTTaGCTAGAGAGATCCTTCTGGATTGTAGACTTGGAGATGGAATTG | + |
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Preference number: 5 (lower is better) Translates to: PGRGFGFPLILRKRI*LERSFWIVDLEMEL Trigger: CAATTCCATCTCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCTCTTTCGAAGAATGAGAGGAAAGCCAAACCCTCGTCCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CCA 90 bp | AGGGTTGCGCATCGAGGATCTCTCTTTCCTGAAAGATGGTTACACTaGGATTTTATGGCGGAAGCACACTCTAAACAAACAGAATATGTT | + |
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Preference number: 5 (lower is better) Translates to: RVAHRGSLFPERWLH*DFMAEAHSKQTEYV Trigger: AACATATTCTGTTTGTTTAGAGTGTGCTTCCGCCATAAAATCCCAGTGTAACCATCTTTCAGGAAAGAGAGATCCTCGATGCGCAACCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CCA 90 bp | TTACTATTTTTAACATACAGCAGCCAGTCAATAGACTGGGGCTCTTaGCTTAAATCTTTGCTCTCGGAGGATACAGCCAAACACTTTCGC | + |
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Preference number: 5 (lower is better) Translates to: LLFLTYSSQSIDWGS*LKSLLSEDTAKHFR Trigger: GCGAAAGTGTTTGGCTGTATCCTCCGAGAGCAAAGATTTAAGCCAAGAGCCCCAGTCTATTGACTGGCTGCTGTATGTTAAAAATAGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CCA 90 bp | TTTCCTCTCATTCTTCGAAAGAGAATTTGCCTAGAGAGATCCTTCTaGATTGTAGACTTGGAGATGGAATTGATAATTTTATTGACAACA | + |
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Preference number: 5 (lower is better) Translates to: FPLILRKRICLERSF*IVDLEMELIILLTT Trigger: TGTTGTCAATAAAATTATCAATTCCATCTCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCTCTTTCGAAGAATGAGAGGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CCA 72 bp | CCTTTGCAAGAACATATCCTGAAACCGGAACCGGAGTaGGATCTACCCAAGGAGTGGGTGGAGAGGGACGGC | + |
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Preference number: 6 (lower is better) Translates to: PLQEHILKPEPE*DLPKEWVERDG Trigger: GCCGTCCCTCTCCACCCACTCCTTGGGTAGATCCCACTCCGGTTCCGGTTTCAGGATATGTTCTTGCAAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 72 bp | GCAGTATTCTGGACCTTGGGGTGGCAAACAGCTGTGTaGATGGCCCGCGTGCTAGGATCACATCTAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: AVFWTLGWQTAV*MARVLGSHLAT Trigger: AGTGGCTAGATGTGATCCTAGCACGCGGGCCATCAACACAGCTGTTTGCCACCCCAAGGTCCAGAATACTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS TCA 72 bp | CTACTTTCCCATCGGTGCTGCTCTCGGGTGTTGGTATaGCAAAGAGGGTTGCGCATCGAGGATCTCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LLSHRCCSRVLV*QRGLRIEDLSF Trigger: GAAAGAGAGATCCTCGATGCGCAACCCTCTTTGTCATACCAACACCCGAGAGCAGCACCGATGGGAAAGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 90 bp | CTGAGTGAAGCAGTATTCTGGACCTTGGGGTGGCAAACAGCTGTGTaGATGGCCCGCGTGCTAGGATCACATCTAGCCACTATTTTAGGT | + |
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Preference number: 6 (lower is better) Translates to: LSEAVFWTLGWQTAV*MARVLGSHLATILG Trigger: ACCTAAAATAGTGGCTAGATGTGATCCTAGCACGCGGGCCATCAACACAGCTGTTTGCCACCCCAAGGTCCAGAATACTGCTTCACTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CCA 72 bp | CGAGGTCTTTGTTTGTCACTGAGTGAAGCAGTATTCTaGACCTTGGGGTGGCAAACAGCTGTGTTGATGGCC | + |
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Preference number: 6 (lower is better) Translates to: RGLCLSLSEAVF*TLGWQTAVLMA Trigger: GGCCATCAACACAGCTGTTTGCCACCCCAAGGTCCAGAATACTGCTTCACTCAGTGACAAACAAAGACCTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | AGGTCCCTGGAGGTAACCTGTGATAACTTCTCACCTTaGCAAGAACATATCCTGAAACCGGAACCGGAGTGG | + |
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Preference number: 6 (lower is better) Translates to: RSLEVTCDNFSP*QEHILKPEPEW Trigger: CCACTCCGGTTCCGGTTTCAGGATATGTTCTTGCAAAGGTGAGAAGTTATCACAGGTTACCTCCAGGGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS TCA 72 bp | GACAAAGAGGGTTGCGCATCGAGGATCTCTCTTTCCTaGAAGATGGTTACACTGGGATTTTATGGCGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: DKEGCASRISLS*KMVTLGFYGGS Trigger: GCTTCCGCCATAAAATCCCAGTGTAACCATCTTTCAGGAAAGAGAGATCCTCGATGCGCAACCCTCTTTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS TCA 72 bp | CCTGTGATAACTTCTCACCTTTGCAAGAACATATCCTaGAACCGGAACCGGAGTGGGATCTACCCAAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: PVITSHLCKNIS*NRNRSGIYPRS Trigger: ACTCCTTGGGTAGATCCCACTCCGGTTCCGGTTTCAGGATATGTTCTTGCAAAGGTGAGAAGTTATCACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 72 bp | TTATGGCGGAAGCACACTCTAAACAAACAGAATATGTaGATGAAAGGCGGGGACCAGGACGAGGGTTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: LWRKHTLNKQNM*MKGGDQDEGLA Trigger: AGCCAAACCCTCGTCCTGGTCCCCGCCTTTCATCAACATATTCTGTTTGTTTAGAGTGTGCTTCCGCCATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 90 bp | ACTGGGATTTTATGGCGGAAGCACACTCTAAACAAACAGAATATGTaGATGAAAGGCGGGGACCAGGACGAGGGTTTGGCTTTCCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: TGILWRKHTLNKQNM*MKGGDQDEGLAFLS Trigger: TGAGAGGAAAGCCAAACCCTCGTCCTGGTCCCCGCCTTTCATCAACATATTCTGTTTGTTTAGAGTGTGCTTCCGCCATAAAATCCCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 90 bp | GGAGGAAACAGAGGAGCAGGAGGAAGAAGAGGAGGAGGATGGGCCTaGAACCTGGGTTTCGAGCTGAATACCATTACTATTTTTAACATA | + |
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Preference number: 6 (lower is better) Translates to: GGNRGAGGRRGGGWA*NLGFELNTITIFNI Trigger: TATGTTAAAAATAGTAATGGTATTCAGCTCGAAACCCAGGTTCAAGGCCCATCCTCCTCCTCTTCTTCCTCCTGCTCCTCTGTTTCCTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS TCA 72 bp | TACAGTCGGGTAGTGGTGAATTACGAGCCACTCGACTaGATTCAAGAGAAGATGAAGTTGGAGGAAAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: YSRVVVNYEPLD*IQEKMKLEESC Trigger: ACAGCTTTCCTCCAACTTCATCTTCTCTTGAATTCAGTCGAGTGGCTCGTAATTCACCACTACCCGACTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS GCA 72 bp | GGTGATTTCCAGCAAAGGTCAATACTTGATGATGTCTaGGTCTTCGGGAGGAGTAACCTTGATCTCGAACTT | + |
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Preference number: 6 (lower is better) Translates to: GDFQQRSILDDV*VFGRSNLDLEL Trigger: AAGTTCGAGATCAAGGTTACTCCTCCCGAAGACGCAGACATCATCAAGTATTGACCTTTGCTGGAAATCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CCA 72 bp | TTAACATACAGCAGCCAGTCAATAGACTGGGGCTCTTaGCTTAAATCTTTGCTCTCGGAGGATACAGCCAAA | + |
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Preference number: 6 (lower is better) Translates to: LTYSSQSIDWGS*LKSLLSEDTAK Trigger: TTTGGCTGTATCCTCCGAGAGCAAAGATTTAAGCCAAGAGCCCCAGTCTATTGACTGGCTGCTGTATGTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 90 bp | ACCAGGACGAGGGTTTGGCTTTCCTCTCATTCTTCGAAAGAGAATTaGCCTAGAGAGATCCTTCTGGATTGTAGACTTGGAGATGGAATT | + |
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Preference number: 6 (lower is better) Translates to: TRTRVWLSSHSSKEN*PREILLDCRLGDGI Trigger: AATTCCATCTCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCTCTTTCGAAGAATGAGAGGAAAGCCAAACCCTCGTCCTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS TCA 72 bp | TTGAGTGCTCTGGGCCTTCTTGTTAAAGCTTGCTGGTaGCACTGTGACTGTATTTTGGGATTGTTCTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: LSALGLLVKACW*HCDCILGLFFA Trigger: TGCAAAGAACAATCCCAAAATACAGTCACAGTGTCACCAGCAAGCTTTAACAAGAAGGCCCAGAGCACTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS TCA 72 bp | AGTCTGTTGGTGAATGATGGCGAACTCAGGGCTTTTTaGCTGGATTCTAATAAAGATGACCAAAGGCGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SLLVNDGELRAF*LDSNKDDQRRS Trigger: AGACCGCCTTTGGTCATCTTTATTAGAATCCAGTCAAAAAGCCCTGAGTTCGCCATCATTCACCAACAGACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS TCA 72 bp | TCAAGAGAAGATGAAGTTGGAGGAAAGCTGTTTCTTTaGAGTCTGTTGGTGAATGATGGCGAACTCAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: SREDEVGGKLFL*SLLVNDGELRA Trigger: AGCCCTGAGTTCGCCATCATTCACCAACAGACTTCAAAGAAACAGCTTTCCTCCAACTTCATCTTCTCTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS GCA 72 bp | GGGTTTGGCTTTCCTCTCATTCTTCGAAAGAGAATTTaGCTAGAGAGATCCTTCTGGATTGTAGACTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: GFGFPLILRKRI*LERSFWIVDLE Trigger: CTCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCTCTTTCGAAGAATGAGAGGAAAGCCAAACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | ACAGGCTTGGCTTTGACTGGTGGTGATTGTCTTAGTTaGATGGTGTCAGAACTTGAACCCCTTATGAACTCA | + |
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Preference number: 6 (lower is better) Translates to: TGLALTGGDCLS*MVSELEPLMNS Trigger: TGAGTTCATAAGGGGTTCAAGTTCTGACACCATCAAACTAAGACAATCACCACCAGTCAAAGCCAAGCCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS TCA 72 bp | TGTTGCACGGAAGTTGAAGATGATGTTGAGACTCTTTaGTTAGACTCCAGTGAAGGTGATTTCCAGCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: CCTEVEDDVETL*LDSSEGDFQQR Trigger: CCTTTGCTGGAAATCACCTTCACTGGAGTCTAATCAAAGAGTCTCAACATCATCTTCAACTTCCGTGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS TCA 72 bp | AAGTTGGAGGAAAGCTGTTTCTTTGAAGTCTGTTGGTaGATGATGGCGAACTCAGGGCTTTTTGACTGGATT | + |
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Preference number: 6 (lower is better) Translates to: KLEESCFFEVCW*MMANSGLFDWI Trigger: AATCCAGTCAAAAAGCCCTGAGTTCGCCATCATTCACCAACAGACTTCAAAGAAACAGCTTTCCTCCAACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | AGGGTTTGGCTTTCCTCTCATTCTTCGAAAGAGAATTaGCCTAGAGAGATCCTTCTGGATTGTAGACTTGGA | + |
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Preference number: 6 (lower is better) Translates to: RVWLSSHSSKEN*PREILLDCRLG Trigger: TCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCTCTTTCGAAGAATGAGAGGAAAGCCAAACCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS TCA 72 bp | AACGCTACTTTTATTTGGCAGTCTGGAACACGGAACTaGAGCAATTTTGTTCTTGATACAGGGCTTAGGACT | + |
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Preference number: 6 (lower is better) Translates to: NATFIWQSGTRN*SNFVLDTGLRT Trigger: AGTCCTAAGCCCTGTATCAAGAACAAAATTGCTTCAGTTCCGTGTTCCAGACTGCCAAATAAAAGTAGCGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CCA 72 bp | TTACTATTTTTAACATACAGCAGCCAGTCAATAGACTaGGGCTCTTGGCTTAAATCTTTGCTCTCGGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: LLFLTYSSQSID*GSWLKSLLSED Trigger: ATCCTCCGAGAGCAAAGATTTAAGCCAAGAGCCCCAGTCTATTGACTGGCTGCTGTATGTTAAAAATAGTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 72 bp | GTCTTCGGGAGGAGTAACCTTGATCTCGAACTTATTTaGCTAGGTTCCAAAGATGAAGTACTGGTAAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: VFGRSNLDLELI*LGSKDEVLVKL Trigger: TAGCTTTACCAGTACTTCATCTTTGGAACCTAGCAAAATAAGTTCGAGATCAAGGTTACTCCTCCCGAAGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | TTGTTATTAGAGTTTGATACAGGAATTTTCAGAGGCTaGCTACAGTCGGGTAGTGGTGAATTACGAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: LLLEFDTGIFRG*LQSGSGELRAT Trigger: AGTGGCTCGTAATTCACCACTACCCGACTGTAGCAAGCCTCTGAAAATTCCTGTATCAAACTCTAATAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | TTATTTGGCAGTCTGGAACACGGAACTGAAGCAATTTaGTTCTTGATACAGGGCTTAGGACTTGATACTCTT | + |
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Preference number: 6 (lower is better) Translates to: LFGSLEHGTEAI*FLIQGLGLDTL Trigger: AAGAGTATCAAGTCCTAAGCCCTGTATCAAGAACAAAATTGCTTCAGTTCCGTGTTCCAGACTGCCAAATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 90 bp | AGGATTTCCAAGAGGGATATGATGAATTTTTCAAGAGGGAGTCTTTaGAAGGTGTCGTTGAGCATGTGGAATATAATGATGACGATGATT | + |
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Preference number: 6 (lower is better) Translates to: RISKRDMMNFSRGSL*KVSLSMWNIMMTMI Trigger: AATCATCGTCATCATTATATTCCACATGCTCAACGACACCTTCAAAAGACTCCCTCTTGAAAAATTCATCATATCCCTCTTGGAAATCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | AAGAGGGATATGATGAATTTTTCAAGAGGGAGTCTTTaGAAGGTGTCGTTGAGCATGTGGAATATAATGATG | + |
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Preference number: 6 (lower is better) Translates to: KRDMMNFSRGSL*KVSLSMWNIMM Trigger: CATCATTATATTCCACATGCTCAACGACACCTTCAAAAGACTCCCTCTTGAAAAATTCATCATATCCCTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 90 bp | CTTCGAAAGAGAATTTGCCTAGAGAGATCCTTCTGGATTGTAGACTaGGAGATGGAATTGATAATTTTATTGACAACATCAACAGGAACA | + |
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Preference number: 6 (lower is better) Translates to: LRKRICLERSFWIVD*EMELIILLTTSTGT Trigger: TGTTCCTGTTGATGTTGTCAATAAAATTATCAATTCCATCTCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCTCTTTCGAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 90 bp | ATTTTGGGATTGTTCTTTGCACATGGATTGGCTGTAAGATTGATTTaGTTTATCACCTGTGTAATAATGTATAGGCGAATTGTCTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: ILGLFFAHGLAVRLI*FITCVIMYRRIVCS Trigger: GCTACAGACAATTCGCCTATACATTATTACACAGGTGATAAACAAAATCAATCTTACAGCCAATCCATGTGCAAAGAACAATCCCAAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 90 bp | GACTGTATTTTGGGATTGTTCTTTGCACATGGATTGGCTGTAAGATaGATTTTGTTTATCACCTGTGTAATAATGTATAGGCGAATTGTC | + |
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Preference number: 6 (lower is better) Translates to: DCILGLFFAHGLAVR*ILFITCVIMYRRIV Trigger: GACAATTCGCCTATACATTATTACACAGGTGATAAACAAAATCAATCTTACAGCCAATCCATGTGCAAAGAACAATCCCAAAATACAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | ACCTGTGTAATAATGTATAGGCGAATTGTCTGTAGCTaGTTGCTGACAGTCTTGAACATAACCAAAGTATTT | + |
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Preference number: 6 (lower is better) Translates to: TCVIMYRRIVCS*LLTVLNITKVF Trigger: AAATACTTTGGTTATGTTCAAGACTGTCAGCAACAAGCTACAGACAATTCGCCTATACATTATTACACAGGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | ATGAATTTTTCAAGAGGGAGTCTTTTGAAGGTGTCGTaGAGCATGTGGAATATAATGATGACGATGATTTCA | + |
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Preference number: 6 (lower is better) Translates to: MNFSRGSLLKVS*SMWNIMMTMIS Trigger: TGAAATCATCGTCATCATTATATTCCACATGCTCAACGACACCTTCAAAAGACTCCCTCTTGAAAAATTCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CCA 72 bp | ATTCTTCGAAAGAGAATTTGCCTAGAGAGATCCTTCTaGATTGTAGACTTGGAGATGGAATTGATAATTTTA | + |
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Preference number: 6 (lower is better) Translates to: ILRKRICLERSF*IVDLEMELIIL Trigger: TAAAATTATCAATTCCATCTCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCTCTTTCGAAGAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | GGGAAAAACTGTGTAATCTTCTCTAATACGTCCAGATaGTCATCGAGGGCTTCTAAATTATTTTCAGATTTA | + |
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Preference number: 6 (lower is better) Translates to: GKNCVIFSNTSR*SSRASKLFSDL Trigger: TAAATCTGAAAATAATTTAGAAGCCCTCGATGACAATCTGGACGTATTAGAGAAGATTACACAGTTTTTCCC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000089279.5 ENSMUST00000209382.3 |
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| CDS CAA 72 bp | TGGATTGTAGACTTGGAGATGGAATTGATAATTTTATaGACAACATCAACAGGAACACTACCGCCTTTAATA | + |
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Preference number: 6 (lower is better) Translates to: WIVDLEMELIIL*TTSTGTLPPLI Trigger: TATTAAAGGCGGTAGTGTTCCTGTTGATGTTGTCAATAAAATTATCAATTCCATCTCCAAGTCTACAATCCA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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| CDS CAA 72 bp | AGAATTTGCCTAGAGAGATCCTTCTGGATTGTAGACTaGGAGATGGAATTGATAATTTTATTGACAACATCA | + |
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Preference number: 6 (lower is better) Translates to: RICLERSFWIVD*EMELIILLTTS Trigger: TGATGTTGTCAATAAAATTATCAATTCCATCTCCAAGTCTACAATCCAGAAGGATCTCTCTAGGCAAATTCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209382.3 |
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