RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CSNK2A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074698

Ensembl transcript IDs: ENSMUST00000099224.10

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCACACCAGAGTCCTCTGCATTACCCTCAGCTCTTGCACAGGTTTaGTGTGTGAGGAGGCCCAGTTATCCACAGCGGTCCACACCAGCC +
Preference number: 1 (lower is better)
Translates to: GTPESSALPSALAQV*CVRRPSYPQRSTPA
Trigger: GGCTGGTGTGGACCGCTGTGGATAACTGGGCCTCCTCACACATCAAACCTGTGCAAGAGCTGAGGGTAATGCAGAGGACTCTGGTGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR GCA 90 bp GCTCTTCGGTGGCACACCAGAGTCCTCTGCATTACCCTCAGCTCTTaGACAGGTTTGATGTGTGAGGAGGCCCAGTTATCCACAGCGGTC +
Preference number: 1 (lower is better)
Translates to: ALRWHTRVLCITLSS*TGLMCEEAQLSTAV
Trigger: GACCGCTGTGGATAACTGGGCCTCCTCACACATCAAACCTGTGCAAGAGCTGAGGGTAATGCAGAGGACTCTGGTGTGCCACCGAAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 90 bp CAGAGTCCTCTGCATTACCCTCAGCTCTTGCACAGGTTTGATGTGTaGGGAGGCCCAGTTATCCACAGCGGTCCACACCAGCCTCAGACA +
Preference number: 1 (lower is better)
Translates to: QSPLHYPQLLHRFDV*GGPVIHSGPHQPQT
Trigger: TGTCTGAGGCTGGTGTGGACCGCTGTGGATAACTGGGCCTCCTCACACATCAAACCTGTGCAAGAGCTGAGGGTAATGCAGAGGACTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 90 bp ACAGCGGTCCACACCAGCCTCAGACACACCTACACTTCTGAGCTGTaGGCAGGGTGTAGAGTCCTGATCTACAACTTTCCTTTCCACCTC +
Preference number: 1 (lower is better)
Translates to: TAVHTSLRHTYTSEL*AGCRVLIYNFPFHL
Trigger: GAGGTGGAAAGGAAAGTTGTAGATCAGGACTCTACACCCTGCTCACAGCTCAGAAGTGTAGGTGTGTCTGAGGCTGGTGTGGACCGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 90 bp AGCCACAAGAGTGTACAATGTGGAAAGAGCAACGTGGGAAGGGGATaGAATTTCCACCCAAACGCAGCAGCTGGGACTGAGGCCAGTTTA +
Preference number: 1 (lower is better)
Translates to: SHKSVQCGKSNVGRG*NFHPNAAAGTEASL
Trigger: TAAACTGGCCTCAGTCCCAGCTGCTGCGTTTGGGTGGAAATTTCATCCCCTTCCCACGTTGCTCTTTCCACATTGTACACTCTTGTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 90 bp TTGGGAAGCTTCCATGGTCTGGGCTGTAGTCCCCTCAGGTTTGAATaGGACACCCACCCAGCGAGACCTTTACACAGGGAACTTAAATCT +
Preference number: 1 (lower is better)
Translates to: LGSFHGLGCSPLRFE*DTHPARPLHRELKS
Trigger: AGATTTAAGTTCCCTGTGTAAAGGTCTCGCTGGGTGGGTGTCTCATTCAAACCTGAGGGGACTACAGCCCAGACCATGGAAGCTTCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 90 bp TCAGACACACCTACACTTCTGAGCTGTGAGCAGGGTGTAGAGTCCTaGTCTACAACTTTCCTTTCCACCTCAAAAGAAAGAATTCATCAG +
Preference number: 1 (lower is better)
Translates to: SDTPTLLSCEQGVES*STTFLSTSKERIHQ
Trigger: CTGATGAATTCTTTCTTTTGAGGTGGAAAGGAAAGTTGTAGATCAGGACTCTACACCCTGCTCACAGCTCAGAAGTGTAGGTGTGTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR GCA 90 bp AGTGTCTTGTTCAAATCACGATCCAGTGCAAACATAATCACAAACTaGATCTCTGGCACACCTGGTGCTTTCAGCTCTGCACAAATCCAA +
Preference number: 1 (lower is better)
Translates to: SVLFKSRSSANIITN*ISGTPGAFSSAQIQ
Trigger: TTGGATTTGTGCAGAGCTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTGTGATTATGTTTGCACTGGATCGTGATTTGAACAAGACACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CCA 90 bp ACATTCGCTAAAGCCACCACCTTGATAAAGTTACTAAAGCCAAGATaGGTTACAAAGTTAGGTAAGTTAATTAAATTCAACTCCCCAAAC +
Preference number: 1 (lower is better)
Translates to: TFAKATTLIKLLKPR*VTKLGKLIKFNSPN
Trigger: GTTTGGGGAGTTGAATTTAATTAACTTACCTAACTTTGTAACCCATCTTGGCTTTAGTAACTTTATCAAGGTGGTGGCTTTAGCGAATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CAA 90 bp TGGCACACCAGAGTCCTCTGCATTACCCTCAGCTCTTGCACAGGTTaGATGTGTGAGGAGGCCCAGTTATCCACAGCGGTCCACACCAGC +
Preference number: 2 (lower is better)
Translates to: WHTRVLCITLSSCTG*MCEEAQLSTAVHTS
Trigger: GCTGGTGTGGACCGCTGTGGATAACTGGGCCTCCTCACACATCAAACCTGTGCAAGAGCTGAGGGTAATGCAGAGGACTCTGGTGTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CAA 90 bp GGGCCTTGGGAAGCTTCCATGGTCTGGGCTGTAGTCCCCTCAGGTTaGAATGAGACACCCACCCAGCGAGACCTTTACACAGGGAACTTA +
Preference number: 2 (lower is better)
Translates to: GPWEASMVWAVVPSG*NETPTQRDLYTGNL
Trigger: TAAGTTCCCTGTGTAAAGGTCTCGCTGGGTGGGTGTCTCATTCAAACCTGAGGGGACTACAGCCCAGACCATGGAAGCTTCCCAAGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp GGCACACCTGGTGCTTTCAGCTCTGCACAAATCCAACATGGTGACCCTCATAGCACACACTTCCAATTCTaGGAGCAGGGCTCCTCACTG +
Preference number: 2 (lower is better)
Translates to: GTPGAFSSAQIQHGDPHSTHFQF*EQGSSL
Trigger: CAGTGAGGAGCCCTGCTCTCAGAATTGGAAGTGTGT...GCTATGAGGGTCACCATGTTGGATTTGTGCAGAGCTGAAAGCACCAGGTGTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp ATCCAGTGCAAACATAATCACAAACTGCATCTCTGGCACACCTGGTGCTTTCAGCAGACACGGTGCTTCTaGAGTGTTCTCACCCCTCCC +
Preference number: 2 (lower is better)
Translates to: IQCKHNHKLHLWHTWCFQQTRCF*SVLTPP
Trigger: GGGAGGGGTGAGAACACTTCAGAAGCACCGTGTCTG...CTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTGTGATTATGTTTGCACTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp GGCACACCTGGTGCTTTCAGCTCTGCACAAATCCAACATGGTGACCCTCATAGCCTCTGGAGAAGAACATaGGATATAAGCCACAAGAGT +
Preference number: 2 (lower is better)
Translates to: GTPGAFSSAQIQHGDPHSLWRRT*DISHKS
Trigger: ACTCTTGTGGCTTATATCTCATGTTCTTCTCCAGAG...GCTATGAGGGTCACCATGTTGGATTTGTGCAGAGCTGAAAGCACCAGGTGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp GGCCATAACAAGAGAACTGATAGTTTCCCACAATTACAGGTCTACCATCTCTGGCCTGGAGAGAAGAGATaGAGTGGCCAGCCAGCAGAA +
Preference number: 2 (lower is better)
Translates to: GHNKRTDSFPQLQVYHLWPGEKR*SGQPAE
Trigger: TTCTGCTGGCTGGCCACTTCATCTCTTCTCTCCAGG...CCAGAGATGGTAGACCTGTAATTGTGGGAAACTATCAGTTCTCTTGTTATGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp GATAAACTTAGGTGGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACCCCTCAGGTTTGAATaGGACACCCACCCAGCGAGA +
Preference number: 2 (lower is better)
Translates to: DKLRWLDYSGKSTLYTHKPLRFE*DTHPAR
Trigger: TCTCGCTGGGTGGGTGTCTCATTCAAACCTGAGGGG...TTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCCACCTAAGTTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CCA 90 bp CTTAGGTGGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACACACACAGGTCTACCATCTCTaGTTCACTGGAGATAGTGGC +
Preference number: 2 (lower is better)
Translates to: LRWLDYSGKSTLYTHKHTQVYHL*FTGDSG
Trigger: GCCACTATCTCCAGTGAACCAGAGATGGTAGACCTG...TGTGTGTTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCCACCTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CCA 90 bp ATCCAGTGCAAACATAATCACAAACTGCATCTCTGGCACACCTGGTGCTTTCAGCCTGATAAACTTAGGTaGCTGGATTACAGTGGAAAG +
Preference number: 2 (lower is better)
Translates to: IQCKHNHKLHLWHTWCFQPDKLR*LDYSGK
Trigger: CTTTCCACTGTAATCCAGCCACCTAAGTTTATCAGG...CTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTGTGATTATGTTTGCACTGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR GCA 90 bp GGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACACACAAAAACTGCCTATCCCCAATCCCTaGAATGCTGAGACACAGAAT +
Preference number: 2 (lower is better)
Translates to: GWITVESPLYTHTNTQKLPIPNP*NAETQN
Trigger: ATTCTGTGTCTCAGCATTGCAGGGATTGGGGATAGG...CAGTTTTTGTGTGTTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CCA 90 bp CTTAGGTGGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACACACACAAGAGTGTACAATGTaGAAAGAGCAACGTGGGAAG +
Preference number: 2 (lower is better)
Translates to: LRWLDYSGKSTLYTHKHTQECTM*KEQRGK
Trigger: CTTCCCACGTTGCTCTTTCCACATTGTACACTCTTG...TGTGTGTTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCCACCTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp AGATATAAGCCACAAGAGTGTACAATGTGGAAAGAGCAACGTGGGAAGGGGATGGAATCCCCTGAGTTATaGAAAGTCCACGTTTTAAAA +
Preference number: 2 (lower is better)
Translates to: RYKPQECTMWKEQRGKGMESPEL*KVHVLK
Trigger: TTTTAAAACGTGGACTTTTCATAACTCAGGGGATTC...CATCCCCTTCCCACGTTGCTCTTTCCACATTGTACACTCTTGTGGCTTATATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CCA 90 bp ATCCAGTGCAAACATAATCACAAACTGCATCTCTGGCACACCTGGTGCTTTCAGAAAAAGGTAGGAGAATaGGGAACTAAGATTTTAGGC +
Preference number: 2 (lower is better)
Translates to: IQCKHNHKLHLWHTWCFQKKVGE*GTKILG
Trigger: GCCTAAAATCTTAGTTCCCCATTCTCCTACCTTTTT...CTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTGTGATTATGTTTGCACTGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CCA 90 bp ATCCAGTGCAAACATAATCACAAACTGCATCTCTGGCACACCTGGTGCTTTCAGAATAGTCACTGCAAGTaGCCAAAAAGAAGAAACTCA +
Preference number: 2 (lower is better)
Translates to: IQCKHNHKLHLWHTWCFQNSHCK*PKRRNS
Trigger: TGAGTTTCTTCTTTTTGGCCACTTGCAGTGACTATT...CTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTGTGATTATGTTTGCACTGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp GATAAACTTAGGTGGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAATTTCAGGGAATCCCCTaGGTTATGAAAAGTCCACGT +
Preference number: 2 (lower is better)
Translates to: DKLRWLDYSGKSTLYTHKFQGIP*VMKSPR
Trigger: ACGTGGACTTTTCATAACTCAGGGGATTCCCTGAAA...TTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCCACCTAAGTTTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR TCA 90 bp GGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACACACAAAAACTGTTAGTGGTGATAAACTaGATTTGGAAGGGGAGAAAA +
Preference number: 2 (lower is better)
Translates to: GWITVESPLYTHTNTQKLLVVIN*IWKGRK
Trigger: TTTTCTCCCCTTCCAAATTCAGTTTATCACCACTAA...CAGTTTTTGTGTGTTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CAA 90 bp TTAGCATCCTCTACTTTTATCATTACATTCGCTAAAGCCACCACCTaGATAAAGTTACTAAAGCCAAGATGGGTTACAAAGTTAGGTAAG +
Preference number: 2 (lower is better)
Translates to: LASSTFIITFAKATT*IKLLKPRWVTKLGK
Trigger: CTTACCTAACTTTGTAACCCATCTTGGCTTTAGTAACTTTATCAAGGTGGTGGCTTTAGCGAATGTAATGATAAAAGTAGAGGATGCTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CAA 90 bp GGCACACCTGGTGCTTTCAGCTCTGCACAAATCCAACATGGTGACCCTCATAGCGTAGTCCCCTCAGGTTaGAATGAGACACCCACCCAG +
Preference number: 3 (lower is better)
Translates to: GTPGAFSSAQIQHGDPHSVVPSG*NETPTQ
Trigger: CTGGGTGGGTGTCTCATTCAAACCTGAGGGGACTAC...GCTATGAGGGTCACCATGTTGGATTTGTGCAGAGCTGAAAGCACCAGGTGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 72 bp TTCCATGGTCTGGGCTGTAGTCCCCTCAGGTTTGAATaGGACACCCACCCAGCGAGACCTTTACACAGGGAA +
Preference number: 3 (lower is better)
Translates to: FHGLGCSPLRFE*DTHPARPLHRE
Trigger: TTCCCTGTGTAAAGGTCTCGCTGGGTGGGTGTCTCATTCAAACCTGAGGGGACTACAGCCCAGACCATGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR GCA 72 bp TGGCACACCAGAGTCCTCTGCATTACCCTCAGCTCTTaGACAGGTTTGATGTGTGAGGAGGCCCAGTTATCC +
Preference number: 3 (lower is better)
Translates to: WHTRVLCITLSS*TGLMCEEAQLS
Trigger: GGATAACTGGGCCTCCTCACACATCAAACCTGTGCAAGAGCTGAGGGTAATGCAGAGGACTCTGGTGTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 72 bp AGTGTACAATGTGGAAAGAGCAACGTGGGAAGGGGATaGAATTTCCACCCAAACGCAGCAGCTGGGACTGAG +
Preference number: 3 (lower is better)
Translates to: SVQCGKSNVGRG*NFHPNAAAGTE
Trigger: CTCAGTCCCAGCTGCTGCGTTTGGGTGGAAATTTCATCCCCTTCCCACGTTGCTCTTTCCACATTGTACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 72 bp CACACCAGCCTCAGACACACCTACACTTCTGAGCTGTaGGCAGGGTGTAGAGTCCTGATCTACAACTTTCCT +
Preference number: 3 (lower is better)
Translates to: HTSLRHTYTSEL*AGCRVLIYNFP
Trigger: AGGAAAGTTGTAGATCAGGACTCTACACCCTGCTCACAGCTCAGAAGTGTAGGTGTGTCTGAGGCTGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CCA 72 bp ACTGATAGTTTCCCACAATTACAGGTCTACCATCTCTaGTTCACTGGAGATAGTGGCTCTGCTCCTGCCTCT +
Preference number: 3 (lower is better)
Translates to: TDSFPQLQVYHL*FTGDSGSAPAS
Trigger: AGAGGCAGGAGCAGAGCCACTATCTCCAGTGAACCAGAGATGGTAGACCTGTAATTGTGGGAAACTATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CAA 90 bp ATCCAGTGCAAACATAATCACAAACTGCATCTCTGGCACACCTGGTGCTTTCAGATAAAAATGAGGGCCTaGGGAAGCTTCCATGGTCTG +
Preference number: 3 (lower is better)
Translates to: IQCKHNHKLHLWHTWCFQIKMRA*GSFHGL
Trigger: CAGACCATGGAAGCTTCCCAAGGCCCTCATTTTTAT...CTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTGTGATTATGTTTGCACTGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR TCA 72 bp CCTACACTTCTGAGCTGTGAGCAGGGTGTAGAGTCCTaGTCTACAACTTTCCTTTCCACCTCAAAAGAAAGA +
Preference number: 3 (lower is better)
Translates to: PTLLSCEQGVES*STTFLSTSKER
Trigger: TCTTTCTTTTGAGGTGGAAAGGAAAGTTGTAGATCAGGACTCTACACCCTGCTCACAGCTCAGAAGTGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR-3UTR CAA 90 bp ATCCAGTGCAAACATAATCACAAACTGCATCTCTGGCACACCTGGTGCTTTCAGGGATCTGTCTGCACATaGGGTAGACTTTTAACATCT +
Preference number: 3 (lower is better)
Translates to: IQCKHNHKLHLWHTWCFQGSVCT*GRLLTS
Trigger: AGATGTTAAAAGTCTACCCAATGTGCAGACAGATCC...CTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTGTGATTATGTTTGCACTGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CCA 72 bp CTAGGCTTCCTCAGTGAAGCACCTGATAAACTTAGGTaGCTGGATTACAGTGGAAAGTCCACTTTATACACA +
Preference number: 3 (lower is better)
Translates to: LGFLSEAPDKLR*LDYSGKSTLYT
Trigger: TGTGTATAAAGTGGACTTTCCACTGTAATCCAGCCACCTAAGTTTATCAGGTGCTTCACTGAGGAAGCCTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CCA 72 bp AAGAACATGAGATATAAGCCACAAGAGTGTACAATGTaGAAAGAGCAACGTGGGAAGGGGATGAAATTTCCA +
Preference number: 3 (lower is better)
Translates to: KNMRYKPQECTM*KEQRGKGMKFP
Trigger: TGGAAATTTCATCCCCTTCCCACGTTGCTCTTTCCACATTGTACACTCTTGTGGCTTATATCTCATGTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CAA 72 bp GAAGCTTCCATGGTCTGGGCTGTAGTCCCCTCAGGTTaGAATGAGACACCCACCCAGCGAGACCTTTACACA +
Preference number: 4 (lower is better)
Translates to: EASMVWAVVPSG*NETPTQRDLYT
Trigger: TGTGTAAAGGTCTCGCTGGGTGGGTGTCTCATTCAAACCTGAGGGGACTACAGCCCAGACCATGGAAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CAA 72 bp AGAGTCCTCTGCATTACCCTCAGCTCTTGCACAGGTTaGATGTGTGAGGAGGCCCAGTTATCCACAGCGGTC +
Preference number: 4 (lower is better)
Translates to: RVLCITLSSCTG*MCEEAQLSTAV
Trigger: GACCGCTGTGGATAACTGGGCCTCCTCACACATCAAACCTGTGCAAGAGCTGAGGGTAATGCAGAGGACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
CDS-3UTR TCA 90 bp CACACAAACACACAAAAACTGGCGCCTTTCCTATCCCCAATCCCTGCAATGCTGCAAGGCAGGGGTTCGTaGCACAGGGTCTTTTACAAT +
Preference number: 4 (lower is better)
Translates to: HTNTQKLAPFLSPIPAMLQGRGS*HRVFYN
Trigger: ATTGTAAAAGACCCTGTGTCACGAACCCCTGCCTTG...CAGCATTGCAGGGATTGGGGATAGGAAAGGCGCCAGTTTTTGTGTGTTTGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
CDS-3UTR TCA 90 bp GGCACACCTGGTGCTTTCAGCTCTGCACAAATCCAACATGGTGACCCTCATAGCTCTGGTACAATTGCTTaGAGTCTGTGTTGTTTACAT +
Preference number: 4 (lower is better)
Translates to: GTPGAFSSAQIQHGDPHSSGTIA*SLCCLH
Trigger: ATGTAAACAACACAGACTTCAAGCAATTGTACCAGA...GCTATGAGGGTCACCATGTTGGATTTGTGCAGAGCTGAAAGCACCAGGTGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
CDS-3UTR TCA 90 bp CTTAGGTGGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACACACAAACAGGTATCCCAAGTaGGTTGGCAGCGGCAATCAC +
Preference number: 4 (lower is better)
Translates to: LRWLDYSGKSTLYTHKHTNRYPK*VGSGNH
Trigger: GTGATTGCCGCTGCCAACTCACTTGGGATACCTGTT...TGTGTGTTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCCACCTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
CDS-3UTR GCA 90 bp CAAACTGCATCTCTGGCACACCTGGTGCTTTCAGCTCTGCACAAATCCAACATGAACGTCTGGTACAATTaGTTGAAGTCTGTGTTGTTT +
Preference number: 4 (lower is better)
Translates to: QTASLAHLVLSALHKSNMNVWYN*LKSVLF
Trigger: AAACAACACAGACTTCAAGCAATTGTACCAGACGTT...CATGTTGGATTTGTGCAGAGCTGAAAGCACCAGGTGTGCCAGAGATGCAGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
3UTR CAA 72 bp TCTACTTTTATCATTACATTCGCTAAAGCCACCACCTaGATAAAGTTACTAAAGCCAAGATGGGTTACAAAG +
Preference number: 4 (lower is better)
Translates to: STFIITFAKATT*IKLLKPRWVTK
Trigger: CTTTGTAACCCATCTTGGCTTTAGTAACTTTATCAAGGTGGTGGCTTTAGCGAATGTAATGATAAAAGTAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
CDS-3UTR CAA 90 bp GGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACACACAAAAACTGAAGCTGATAGTCATCTaGATTCCCCCATTCCACCAC +
Preference number: 5 (lower is better)
Translates to: GWITVESPLYTHTNTQKLKLIVI*IPPFHH
Trigger: GTGGTGGAATGGGGGAATCAAGATGACTATCAGCTT...CAGTTTTTGTGTGTTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10
CDS-3UTR CAA 90 bp CTTAGGTGGCTGGATTACAGTGGAAAGTCCACTTTATACACACACAAACACACAGTCTGGTACAATTGCTaGAAGTCTGTGTTGTTTACA +
Preference number: 5 (lower is better)
Translates to: LRWLDYSGKSTLYTHKHTVWYNC*KSVLFT
Trigger: TGTAAACAACACAGACTTCAAGCAATTGTACCAGAC...TGTGTGTTTGTGTGTGTATAAAGTGGACTTTCCACTGTAATCCAGCCACCTAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099224.10