RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CSNK1D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025162

Ensembl transcript IDs: ENSMUST00000018274.10, ENSMUST00000070575.14, ENSMUST00000146837.2, ENSMUST00000154483.8, ENSMUST00000239115.2

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCCCATGCTCAGCTCGGGCTCGCCCTGGGCACCTCACACCCACCTaGCCTGTGGCCGGTGGCGGCCTGTGTGGCTGGAAGCCCGGTCAG +
Preference number: 1 (lower is better)
Translates to: SPCSARARPGHLTPT*PVAGGGLCGWKPGQ
Trigger: CTGACCGGGCTTCCAGCCACACAGGCCGCCACCGGCCACAGGGCAGGTGGGTGTGAGGTGCCCAGGGCGAGCCCGAGCTGAGCATGGGCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR TCA 90 bp GGTGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTaGGAGGCTCTTCACAGGGAGTCGGGTTCTCTCTGCAATGGTCTC +
Preference number: 1 (lower is better)
Translates to: GGIIRERRSATTGGS*EALHRESGSLCNGL
Trigger: GAGACCATTGCAGAGAGAACCCGACTCCCTGTGAAGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 90 bp AGATGGGGAGCTCAGGTCCTGCCGTCTCTTCATATCCGGTGCACATaGTGGGGAAGAGCATGGTGGCATCCTAACCGCCAGCGGCAGAGC +
Preference number: 1 (lower is better)
Translates to: RWGAQVLPSLHIRCT*WGRAWWHPNRQRQS
Trigger: GCTCTGCCGCTGGCGGTTAGGATGCCACCATGCTCTTCCCCACCATGTGCACCGGATATGAAGAGACGGCAGGACCTGAGCTCCCCATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR TCA 90 bp GCCCTTCACAGCAAAAAGGAGAGTTCTCATCGGTGCACGACAGACTaGAGACCACTGGAAGCCACCCGACCGGGAATCCAGTGCTGCCTT +
Preference number: 1 (lower is better)
Translates to: ALHSKKESSHRCTTD*RPLEATRPGIQCCL
Trigger: AAGGCAGCACTGGATTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGAGAACTCTCCTTTTTGCTGTGAAGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
3UTR CCA 90 bp CTTCTTGGCACTTCAGGGTTGATTCCCTTTGGCCACTGGTCCCTCTaGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCTCCCTGGCTC +
Preference number: 1 (lower is better)
Translates to: LLGTSGLIPFGHWSL*ANHGVFLGQPAPWL
Trigger: GAGCCAGGGAGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 90 bp GCAAAAAGGAGAGTTCTCATCGGTGCACGACAGACTGAAGACCACTaGAAGCCACCCGACCGGGAATCCAGTGCTGCCTTCCGATGGAGA +
Preference number: 1 (lower is better)
Translates to: AKRRVLIGARQTEDH*KPPDRESSAAFRWR
Trigger: TCTCCATCGGAAGGCAGCACTGGATTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGAGAACTCTCCTTTTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
3UTR GCA 90 bp TTGCAACAAAAATCTCAAACTCGCCCGACCCTCCCAACCTCCCTCTaGACTCCTAGACACACAGTCCCACGGAGTCAAGTCTCTGCACCC +
Preference number: 1 (lower is better)
Translates to: LQQKSQTRPTLPTSL*TPRHTVPRSQVSAP
Trigger: GGGTGCAGAGACTTGACTCCGTGGGACTGTGTGTCTAGGAGTGCAGAGGGAGGTTGGGAGGGTCGGGCGAGTTTGAGATTTTTGTTGCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR GCA 90 bp CATAGGCTGACAGGGAAAATCAGAGATGGACCCACACACATGTACTaGACCCACTTCTCAGATGGGGAGCTCAGGTCCTGCCGTCTCTTC +
Preference number: 1 (lower is better)
Translates to: HRLTGKIRDGPTHMY*THFSDGELRSCRLF
Trigger: GAAGAGACGGCAGGACCTGAGCTCCCCATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCCCTGTCAGCCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 90 bp AATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATaGGGAGCTCAGGTCCTGCCGTCTCTTCATATCCGGTGCACATGG +
Preference number: 1 (lower is better)
Translates to: NQRWTHTHVLHPLLR*GAQVLPSLHIRCTW
Trigger: CCATGTGCACCGGATATGAAGAGACGGCAGGACCTGAGCTCCCCATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 90 bp AGTTACCTGCTTCTTGGCACTTCAGGGTTGATTCCCTTTGGCCACTaGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCT +
Preference number: 1 (lower is better)
Translates to: SYLLLGTSGLIPFGH*SLWANHGVFLGQPA
Trigger: AGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 90 bp GATAGGCAGTTACCTGCTTCTTGGCACTTCAGGGTTGATTCCCTTTaGCCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACA +
Preference number: 1 (lower is better)
Translates to: DRQLPASWHFRVDSL*PLVPLGKPWCVSRT
Trigger: TGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAACTGCCTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 90 bp AGCCAGCTCCCTGGCTCTGAGCAGAGAGCCCATGACAAACCCAAATaGCATCTGCATGAGACTATTCAGTCTATTCTGCAACTTCCCAAG +
Preference number: 1 (lower is better)
Translates to: SQLPGSEQRAHDKPK*HLHETIQSILQLPK
Trigger: CTTGGGAAGTTGCAGAATAGACTGAATAGTCTCATGCAGATGCCATTTGGGTTTGTCATGGGCTCTCTGCTCAGAGCCAGGGAGCTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR GCA 90 bp ACTAGTAAAGCCATTGGTAACAGAGTAGATCAGCCATGCATTGTCTaGCCTTCACAGCAAAAAGGAGAGTTCTCATCGGTGCACGACAGA +
Preference number: 1 (lower is better)
Translates to: TSKAIGNRVDQPCIV*PSQQKGEFSSVHDR
Trigger: TCTGTCGTGCACCGATGAGAACTCTCCTTTTTGCTGTGAAGGGCAGACAATGCATGGCTGATCTACTCTGTTACCAATGGCTTTACTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp CCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCTCCCTGCACACGGGGCCACGGTaGCAGCCCCTGGCGATGGCA +
Preference number: 2 (lower is better)
Translates to: PLVPLGKPWCVSRTASSLHTGPR*QPLAMA
Trigger: TGCCATCGCCAGGGGCTGCCACCGTGGCCCCGTGTG...CAGGGAGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp CTGGTAGCTGCGGTGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGACAGACTGAAGACCACTaGAAGCCACCCGACCGGGAA +
Preference number: 2 (lower is better)
Translates to: LVAAVGSSGSAGPPPLVGQTEDH*KPPDRE
Trigger: TTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTG...TCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCACCGCAGCTACCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp TTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGCGGTGGCGGCCTGTGTaGCTGGAAGCCCGGTCAGAG +
Preference number: 2 (lower is better)
Translates to: FSMWSAPADLCPAHAQLGRWRPV*LEARSE
Trigger: CTCTGACCGGGCTTCCAGCCACACAGGCCGCCACCG...CCCGAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR-3UTR CCA 90 bp GGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATGGGGCACACGGGGCCACGGTaGCAGCCCCTGGCGATGGCA +
Preference number: 2 (lower is better)
Translates to: GKSEMDPHTCTAPTSQMGHTGPR*QPLAMA
Trigger: TGCCATCGCCAGGGGCTGCCACCGTGGCCCCGTGTG...CCCCATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp TCTGCCTCCTTTGGGAGGACTGCCAGGCCGTGGTGCTTTGCTGAGGCTGTAACTTCCTTCTGCCTCCTTTaGGAGGACTGCCAGGCCGTG +
Preference number: 2 (lower is better)
Translates to: SASFGRTARPWCFAEAVTSFCLL*EDCQAV
Trigger: CACGGCCTGGCAGTCCTCCCAAAGGAGGCAGAAGGA...AGTTACAGCCTCAGCAAAGCACCACGGCCTGGCAGTCCTCCCAAAGGAGGCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp GTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGGGCGGCCTGTGTGGCTaGAAGCCCGGTCAGAGGCCG +
Preference number: 2 (lower is better)
Translates to: VNFSMWSAPADLCPAHAQGGLCG*KPGQRP
Trigger: CGGCCTCTGACCGGGCTTCCAGCCACACAGGCCGCC...CTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR-3UTR TCA 90 bp TTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTGGCCTGGAGAGCTCCCGCGGTGCACGACAGACTaGAGACCACTGGAAGCCACC +
Preference number: 2 (lower is better)
Translates to: LCFDSPCASLGEWPGELPRCTTD*RPLEAT
Trigger: GGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCG...CGGGAGCTCTCCAGGCCACTCACCCAGCGATGCACATGGGGAATCAAAACACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp CCAGAACCACAGGTATCAACAAGAACACTTGCCGGGCAGGCCTGCCACTGGAGATCCTTCTGCCTCCTTTaGGAGGACTGCCAGGCCGTG +
Preference number: 2 (lower is better)
Translates to: PEPQVSTRTLAGQACHWRSFCLL*EDCQAV
Trigger: CACGGCCTGGCAGTCCTCCCAAAGGAGGCAGAAGGA...TCTCCAGTGGCAGGCCTGCCCGGCAAGTGTTCTTGTTGATACCTGTGGTTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp TCTGGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAAGCTCGGGCTCGCCCTaGGCACCTCACACCCACCTG +
Preference number: 2 (lower is better)
Translates to: SGGLVNFSMWSAPADLCPSSGSP*APHTHL
Trigger: CAGGTGGGTGTGAGGTGCCCAGGGCGAGCCCGAGCT...TGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR-3UTR GCA 90 bp TCTGCCTCCTTTGGGAGGACTGCCAGGCCGTGGTGCTTTGCTGAGGCTGTAACTGAGTCGGGTTCTCTCTaGAATGGTCTCCCAGCCTCT +
Preference number: 2 (lower is better)
Translates to: SASFGRTARPWCFAEAVTESGSL*NGLPAS
Trigger: AGAGGCTGGGAGACCATTGCAGAGAGAACCCGACTC...AGTTACAGCCTCAGCAAAGCACCACGGCCTGGCAGTCCTCCCAAAGGAGGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp CGCAGTGTGTGGCACCACACCTTTCTGGAGGTCACGCAGCATGTGGAGGTGAAGCTCAACACTCACATGTaGCCCTCTCTTGCCTGCCTC +
Preference number: 2 (lower is better)
Translates to: RSVWHHTFLEVTQHVEVKLNTHM*PSLACL
Trigger: GAGGCAGGCAAGAGAGGGGCACATGTGAGTGTTGAG...CTTCACCTCCACATGCTGCGTGACCTCCAGAAAGGTGTGGTGCCACACACTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp CACGCCATGGCAGTTGTACCTGCTCTGATGACTGCAGGCTATCAGTTTACAGTGCACGGTGGCAGCCCCTaGCGATGGCAGCTCTTGGAG +
Preference number: 2 (lower is better)
Translates to: HAMAVVPALMTAGYQFTVHGGSP*RWQLLE
Trigger: CTCCAAGAGCTGCCATCGCCAGGGGCTGCCACCGTG...CACTGTAAACTGATAGCCTGCAGTCATCAGAGCAGGTACAACTGCCATGGCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp GGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATGGGGCCCCATGTGCATCGCTaGGTGAGTGGCCTGGAGAGC +
Preference number: 2 (lower is better)
Translates to: GKSEMDPHTCTAPTSQMGPHVHR*VSGLES
Trigger: GCTCTCCAGGCCACTCACCCAGCGATGCACATGGGG...CCCCATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp GAGTCAGATAGGCAGTTACCTGCTTCTTGGCACTTCAGGGTTGATTCCCTTTGGGGCAGCCCCTGGCGATaGCAGCTCTTGGAGCCTGTC +
Preference number: 2 (lower is better)
Translates to: ESDRQLPASWHFRVDSLWGSPWR*QLLEPV
Trigger: GACAGGCTCCAAGAGCTGCCATCGCCAGGGGCTGCC...CCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAACTGCCTATCTGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR TCA 90 bp CTTTGGCCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCACACAAGCTCAGCTTTaGATCTTGGAGCTCTCCAGC +
Preference number: 2 (lower is better)
Translates to: LWPLVPLGKPWCVSRTASTQAQL*ILELSS
Trigger: GCTGGAGAGCTCCAAGATTCAAAGCTGAGCTTGTGT...GCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp TCTGCCTCCTTTGGGAGGACTGCCAGGCCGTGGTGCTTTGCTGAGGCTGTAACTCATGTGCCCCTCTCTTaGCTGCCTCCATTTTACATA +
Preference number: 2 (lower is better)
Translates to: SASFGRTARPWCFAEAVTHVPLS*LPPFYI
Trigger: TATGTAAAATGGAGGCAGGCAAGAGAGGGGCACATG...AGTTACAGCCTCAGCAAAGCACCACGGCCTGGCAGTCCTCCCAAAGGAGGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp ACAGGGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATCCCCATGTGCATCGCTaGGTGAGTGGCCTGGAGAGC +
Preference number: 2 (lower is better)
Translates to: TGKIRDGPTHMYCTHFSDPHVHR*VSGLES
Trigger: GCTCTCCAGGCCACTCACCCAGCGATGCACATGGGG...ATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp ACTTCAGGGTTGATTCCCTTTGGCCACTGGTCCCTCTGGGCAAACCATGGTGTGATTCCCTTTGGCCACTaGTCCCTCTGGGCAAACCAT +
Preference number: 2 (lower is better)
Translates to: TSGLIPFGHWSLWANHGVIPFGH*SLWANH
Trigger: ATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAAT...CACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR TCA 90 bp TTTGGCCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCTACACAAGCTCAGCTTTaGATCTTGGAGCTCTCCAGC +
Preference number: 2 (lower is better)
Translates to: FGHWSLWANHGVFLGQPATQAQL*ILELSS
Trigger: GCTGGAGAGCTCCAAGATTCAAAGCTGAGCTTGTGT...AGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp ACTTCAGGGTTGATTCCCTTTGGCCACTGGTCCCTCTGGGCAAACCATGGTGTGCAGCCATGCATTGTCTaGCCTTCACAGCAAAAAGGA +
Preference number: 2 (lower is better)
Translates to: TSGLIPFGHWSLWANHGVQPCIV*PSQQKG
Trigger: TCCTTTTTGCTGTGAAGGGCAGACAATGCATGGCTG...CACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp GAGGTAACCAGCATAACTCTCCATAGGCTGACAGGGAAAATCAGAGATGGACCCCTCAACACTCACATGTaGCCCTCTCTTGCCTGCCTC +
Preference number: 2 (lower is better)
Translates to: EVTSITLHRLTGKIRDGPLNTHM*PSLACL
Trigger: GAGGCAGGCAAGAGAGGGGCACATGTGAGTGTTGAG...GGGTCCATCTCTGATTTTCCCTGTCAGCCTATGGAGAGTTATGCTGGTTACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp ACAAACGCACAGCTCAGAGACTGGTCACCAAGACACAGGTTGATACACACATTCGGGGAGCTCAGGTCCTaGCGTCTCTTCATATCCGGT +
Preference number: 2 (lower is better)
Translates to: TNAQLRDWSPRHRLIHTFGELRS*RLFISG
Trigger: ACCGGATATGAAGAGACGGCAGGACCTGAGCTCCCC...GAATGTGTGTATCAACCTGTGTCTTGGTGACCAGTCTCTGAGCTGTGCGTTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp GGCTATCAGTTTACAGTGGGAAAGAGTAAGCAAGATGCCCAAATTAGGCTGATGCAGGTCCGCCACCACTaGTGGGAGCTGAGAGGCTCT +
Preference number: 2 (lower is better)
Translates to: GYQFTVGKSKQDAQIRLMQVRHH*WELRGS
Trigger: AGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTG...CATCAGCCTAATTTGGGCATCTTGCTTACTCTTTCCCACTGTAAACTGATAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp GAGGTAACCAGCATAACTCTCCATAGGCTGACAGGGAAAATCAGAGATGGACCCGGCCACTGGTCCCTCTaGGCAAACCATGGTGTGTTT +
Preference number: 2 (lower is better)
Translates to: EVTSITLHRLTGKIRDGPGHWSL*ANHGVF
Trigger: AAACACACCATGGTTTGCCCAGAGGGACCAGTGGCC...GGGTCCATCTCTGATTTTCCCTGTCAGCCTATGGAGAGTTATGCTGGTTACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp TTGCAGAGTAACCAGTTCAGGATTCAGAAATCAGCACCCACAGGCTCAGATGGCCATATCCGGTGCACATaGTGGGGAAGAGCATGGTGG +
Preference number: 2 (lower is better)
Translates to: LQSNQFRIQKSAPTGSDGHIRCT*WGRAWW
Trigger: CCACCATGCTCTTCCCCACCATGTGCACCGGATATG...GCCATCTGAGCCTGTGGGTGCTGATTTCTGAATCCTGAACTGGTTACTCTGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp CCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCTCCCTGCATGACAAACCCAAATaGCATCTGCATGAGACTATT +
Preference number: 2 (lower is better)
Translates to: PLVPLGKPWCVSRTASSLHDKPK*HLHETI
Trigger: AATAGTCTCATGCAGATGCCATTTGGGTTTGTCATG...CAGGGAGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp ACAAACGCACAGCTCAGAGACTGGTCACCAAGACACAGGTTGATACACACATTCAGACCACGCAGTGTGTaGCACCACACCTTTCTGGAG +
Preference number: 2 (lower is better)
Translates to: TNAQLRDWSPRHRLIHTFRPRSV*HHTFLE
Trigger: CTCCAGAAAGGTGTGGTGCCACACACTGCGTGGTCT...GAATGTGTGTATCAACCTGTGTCTTGGTGACCAGTCTCTGAGCTGTGCGTTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp TCTGATAAAGGATTTGCAACAAAAATCTCAAACTCGCCCGACCCTCCCAACCTCCTCCCAACCTCCCTCTaGACTCCTAGACACACAGTC +
Preference number: 2 (lower is better)
Translates to: SDKGFATKISNSPDPPNLLPTSL*TPRHTV
Trigger: GACTGTGTGTCTAGGAGTGCAGAGGGAGGTTGGGAG...GAGGTTGGGAGGGTCGGGCGAGTTTGAGATTTTTGTTGCAAATCCTTTATCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp ACTATTCAGTCTATTCTGCAACTTCCCAAGTTCAAAGGCATAGAGGAAACCAATCACGGTGGCAGCCCCTaGCGATGGCAGCTCTTGGAG +
Preference number: 2 (lower is better)
Translates to: TIQSILQLPKFKGIEETNHGGSP*RWQLLE
Trigger: CTCCAAGAGCTGCCATCGCCAGGGGCTGCCACCGTG...ATTGGTTTCCTCTATGCCTTTGAACTTGGGAAGTTGCAGAATAGACTGAATAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp TCTGATAAAGGATTTGCAACAAAAATCTCAAACTCGCCCGACCCTCCCAACCTCATCCGGTGCACATGGTaGGGAAGAGCATGGTGGCAT +
Preference number: 2 (lower is better)
Translates to: SDKGFATKISNSPDPPNLIRCTW*GRAWWH
Trigger: ATGCCACCATGCTCTTCCCCACCATGTGCACCGGAT...GAGGTTGGGAGGGTCGGGCGAGTTTGAGATTTTTGTTGCAAATCCTTTATCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp GAGGTAACCAGCATAACTCTCCATAGGCTGACAGGGAAAATCAGAGATGGACCCCATGTGCCCCTCTCTTaGCTGCCTCCATTTTACATA +
Preference number: 2 (lower is better)
Translates to: EVTSITLHRLTGKIRDGPHVPLS*LPPFYI
Trigger: TATGTAAAATGGAGGCAGGCAAGAGAGGGGCACATG...GGGTCCATCTCTGATTTTCCCTGTCAGCCTATGGAGAGTTATGCTGGTTACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp GAGCCTGTCCATTTAGTTTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTCAGCCATGCATTGTCTaGCCTTCACAGCAAAAAGGA +
Preference number: 2 (lower is better)
Translates to: EPVHLVCVLIPHVHRWVSQPCIV*PSQQKG
Trigger: TCCTTTTTGCTGTGAAGGGCAGACAATGCATGGCTG...ACTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTAAATGGACAGGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR GCA 90 bp TCTGAGCAGAGAGCCCATGACAAACCCAAATGGCATCTGCATGAGACTATTCAGACCTGCTCTGATGACTaGAGGCTATCAGTTTACAGT +
Preference number: 2 (lower is better)
Translates to: SEQRAHDKPKWHLHETIQTCSDD*RLSVYS
Trigger: ACTGTAAACTGATAGCCTGCAGTCATCAGAGCAGGT...CTGAATAGTCTCATGCAGATGCCATTTGGGTTTGTCATGGGCTCTCTGCTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR TCA 90 bp ACAAACGCACAGCTCAGAGACTGGTCACCAAGACACAGGTTGATACACACATTCAGTTCCTTTCCAAAGTaGACAGCACAACATGAGAAA +
Preference number: 2 (lower is better)
Translates to: TNAQLRDWSPRHRLIHTFSSFPK*TAQHEK
Trigger: TTTCTCATGTTGTGCTGTTCACTTTGGAAAGGAACT...GAATGTGTGTATCAACCTGTGTCTTGGTGACCAGTCTCTGAGCTGTGCGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR TCA 90 bp GTACTCAATACGACTTATCATTTGGTCAGCAAGCAACAGAACAGTTTTGAGACTGTAGCTCCATCACCATaGCATTGTAGTCCCCCTCAG +
Preference number: 2 (lower is better)
Translates to: VLNTTYHLVSKQQNSFETVAPSP*HCSPPQ
Trigger: CTGAGGGGGACTACAATGTCATGGTGATGGAGCTAC...AGTCTCAAAACTGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTATTGAGTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146837.2
3UTR-3UTR GCA 90 bp ACAGCAATCCTCTCCCTAGAAACCACAAACACAAGCTCAGCTTTGAATCTTGGAACCTGCTCTGATGACTaGAGGCTATCAGTTTACAGT +
Preference number: 2 (lower is better)
Translates to: TAILSLETTNTSSALNLGTCSDD*RLSVYS
Trigger: ACTGTAAACTGATAGCCTGCAGTCATCAGAGCAGGT...TCCAAGATTCAAAGCTGAGCTTGTGTTTGTGGTTTCTAGGGAGAGGATTGCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp ACAAACGCACAGCTCAGAGACTGGTCACCAAGACACAGGTTGATACACACATTCCATGACAAACCCAAATaGCATCTGCATGAGACTATT +
Preference number: 2 (lower is better)
Translates to: TNAQLRDWSPRHRLIHTFHDKPK*HLHETI
Trigger: AATAGTCTCATGCAGATGCCATTTGGGTTTGTCATG...GAATGTGTGTATCAACCTGTGTCTTGGTGACCAGTCTCTGAGCTGTGCGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CCA 90 bp GTACTCAATACGACTTATCATTTGGTCAGCAAGCAACAGAACAGTTTTGAGACTTTCCTGACTGGATTTTaGTCTGGTGAAGTGCCTGGG +
Preference number: 2 (lower is better)
Translates to: VLNTTYHLVSKQQNSFETFLTGF*SGEVPG
Trigger: CCCAGGCACTTCACCAGACCAAAATCCAGTCAGGAA...AGTCTCAAAACTGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTATTGAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146837.2
3UTR-3UTR TCA 90 bp TACTCAATACGACTTATCATTTGGTCAGCAAGCAACAGAACAGTTTTGAGACTATTTAATCTATTTTCCTaGCTGGATTTTGGTCTGGTG +
Preference number: 2 (lower is better)
Translates to: YSIRLIIWSASNRTVLRLFNLFS*LDFGLV
Trigger: CACCAGACCAAAATCCAGTCAGGAAAATAGATTAAA...TAGTCTCAAAACTGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTATTGAGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000146837.2
3UTR TCA 72 bp ATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTaGGAGGCTCTTCACAGGGAGTCGGGTTCTCTCTGC +
Preference number: 3 (lower is better)
Translates to: IRERRSATTGGS*EALHRESGSLC
Trigger: GCAGAGAGAACCCGACTCCCTGTGAAGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp TGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTaGGAGCTGAGAGGCTCTTCACAGGGAGTCGGGTTC +
Preference number: 3 (lower is better)
Translates to: WDHQGAQVRHHW*ELRGSSQGVGF
Trigger: GAACCCGACTCCCTGTGAAGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR GCA 72 bp CCTTCTGCCTCCTTTGGGAGGACTGCCAGGCCGTGGTaGTTTGCTGAGGCTGTAACTGTGAGCCCTCACGCC +
Preference number: 3 (lower is better)
Translates to: PSASFGRTARPW*FAEAVTVSPHA
Trigger: GGCGTGAGGGCTCACAGTTACAGCCTCAGCAAAGCACCACGGCCTGGCAGTCCTCCCAAAGGAGGCAGAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp ATAACTGAGCTCACACGGGGCCACGGTGGCAGCCCCTaGCGATGGCAGCTCTTGGAGCCTGTCCATTTAGTT +
Preference number: 3 (lower is better)
Translates to: ITELTRGHGGSP*RWQLLEPVHLV
Trigger: AACTAAATGGACAGGCTCCAAGAGCTGCCATCGCCAGGGGCTGCCACCGTGGCCCCGTGTGAGCTCAGTTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp AGAGGCTCTTCACAGGGAGTCGGGTTCTCTCTGCAATaGTCTCCCAGCCTCTGCTCTTCGTCCCAGCCCCAT +
Preference number: 3 (lower is better)
Translates to: RGSSQGVGFSLQ*SPSLCSSSQPH
Trigger: ATGGGGCTGGGACGAAGAGCAGAGGCTGGGAGACCATTGCAGAGAGAACCCGACTCCCTGTGAAGAGCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp CTTCCTTCTGCCTCCTTTGGGAGGACTGCCAGGCCGTaGTGCTTTGCTGAGGCTGTAACTGTGAGCCCTCAC +
Preference number: 3 (lower is better)
Translates to: LPSASFGRTARP*CFAEAVTVSPH
Trigger: GTGAGGGCTCACAGTTACAGCCTCAGCAAAGCACCACGGCCTGGCAGTCCTCCCAAAGGAGGCAGAAGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp GCTCAGGTCCTGCCGTCTCTTCATATCCGGTGCACATaGTGGGGAAGAGCATGGTGGCATCCTAACCGCCAG +
Preference number: 3 (lower is better)
Translates to: AQVLPSLHIRCT*WGRAWWHPNRQ
Trigger: CTGGCGGTTAGGATGCCACCATGCTCTTCCCCACCATGTGCACCGGATATGAAGAGACGGCAGGACCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp GATTCCCTTTGGCCACTGGTCCCTCTGGGCAAACCATaGTGTGTTTCTAGGACAGCCAGCTCCCTGGCTCTG +
Preference number: 3 (lower is better)
Translates to: DSLWPLVPLGKP*CVSRTASSLAL
Trigger: CAGAGCCAGGGAGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp AGAGTTCTCATCGGTGCACGACAGACTGAAGACCACTaGAAGCCACCCGACCGGGAATCCAGTGCTGCCTTC +
Preference number: 3 (lower is better)
Translates to: RVLIGARQTEDH*KPPDRESSAAF
Trigger: GAAGGCAGCACTGGATTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGAGAACTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
3UTR GCA 72 bp AAATCTCAAACTCGCCCGACCCTCCCAACCTCCCTCTaGACTCCTAGACACACAGTCCCACGGAGTCAAGTC +
Preference number: 3 (lower is better)
Translates to: KSQTRPTLPTSL*TPRHTVPRSQV
Trigger: GACTTGACTCCGTGGGACTGTGTGTCTAGGAGTGCAGAGGGAGGTTGGGAGGGTCGGGCGAGTTTGAGATTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp TGGACCCACACACATGTACTGCACCCACTTCTCAGATaGGGAGCTCAGGTCCTGCCGTCTCTTCATATCCGG +
Preference number: 3 (lower is better)
Translates to: WTHTHVLHPLLR*GAQVLPSLHIR
Trigger: CCGGATATGAAGAGACGGCAGGACCTGAGCTCCCCATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CAA 90 bp CGCAGTGTGTGGCACCACACCTTTCTGGAGGTCACGCAGCATGTGGAGGTGAAGACATGTGCCCCTCTCTaGCCTGCCTCCATTTTACAT +
Preference number: 3 (lower is better)
Translates to: RSVWHHTFLEVTQHVEVKTCAPL*PASILH
Trigger: ATGTAAAATGGAGGCAGGCAAGAGAGGGGCACATGT...CTTCACCTCCACATGCTGCGTGACCTCCAGAAAGGTGTGGTGCCACACACTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR TCA 72 bp AGCAAAAAGGAGAGTTCTCATCGGTGCACGACAGACTaGAGACCACTGGAAGCCACCCGACCGGGAATCCAG +
Preference number: 3 (lower is better)
Translates to: SKKESSHRCTTD*RPLEATRPGIQ
Trigger: CTGGATTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGAGAACTCTCCTTTTTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
3UTR TCA 72 bp CAGTGGGAAAGAGTAAGCAAGATGCCCAAATTAGGCTaGTGGGAGCCACAAGACACACACGCACACGCGCAC +
Preference number: 3 (lower is better)
Translates to: QWERVSKMPKLG*WEPQDTHAHAH
Trigger: GTGCGCGTGTGCGTGTGTGTCTTGTGGCTCCCATCAGCCTAATTTGGGCATCTTGCTTACTCTTTCCCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp ACTTCAGGGTTGATTCCCTTTGGCCACTGGTCCCTCTaGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCT +
Preference number: 3 (lower is better)
Translates to: TSGLIPFGHWSL*ANHGVFLGQPA
Trigger: AGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp CTTCTTGGCACTTCAGGGTTGATTCCCTTTGGCCACTaGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGA +
Preference number: 3 (lower is better)
Translates to: LLGTSGLIPFGH*SLWANHGVFLG
Trigger: TCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCAAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp TTACCTGCTTCTTGGCACTTCAGGGTTGATTCCCTTTaGCCACTGGTCCCTCTGGGCAAACCATGGTGTGTT +
Preference number: 3 (lower is better)
Translates to: LPASWHFRVDSL*PLVPLGKPWCV
Trigger: AACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR GCA 72 bp CACACACATCCTCAACACTCACATGTGCCCCTCTCTTaGCTGCCTCCATTTTACATAGAAGCTCCAAGCCAG +
Preference number: 3 (lower is better)
Translates to: HTHPQHSHVPLS*LPPFYIEAPSQ
Trigger: CTGGCTTGGAGCTTCTATGTAAAATGGAGGCAGGCAAGAGAGGGGCACATGTGAGTGTTGAGGATGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR TCA 72 bp TCAGATGGCTGGCAGGCACAATTAACAGCCACATTCTaGGGTGCTATATCACACATCAGCAGTGTGTCCCTC +
Preference number: 3 (lower is better)
Translates to: SDGWQAQLTATF*GAISHISSVSL
Trigger: GAGGGACACACTGCTGATGTGTGATATAGCACCTCAGAATGTGGCTGTTAATTGTGCCTGCCAGCCATCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR TCA 72 bp ACCACACCTTTCTGGAGGTCACGCAGCATGTGGAGGTaGAGGTTTGTTTTAGAGTCAGATAGGCAGTTACCT +
Preference number: 3 (lower is better)
Translates to: TTPFWRSRSMWR*RFVLESDRQLP
Trigger: AGGTAACTGCCTATCTGACTCTAAAACAAACCTTCACCTCCACATGCTGCGTGACCTCCAGAAAGGTGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR GCA 72 bp CTGAGCAGAGAGCCCATGACAAACCCAAATGGCATCTaGATGAGACTATTCAGTCTATTCTGCAACTTCCCA +
Preference number: 3 (lower is better)
Translates to: LSREPMTNPNGI*MRLFSLFCNFP
Trigger: TGGGAAGTTGCAGAATAGACTGAATAGTCTCATGCAGATGCCATTTGGGTTTGTCATGGGCTCTCTGCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp TTTGTTTTAGAGTCAGATAGGCAGTTACCTGCTTCTTaGCACTTCAGGGTTGATTCCCTTTGGCCACTGGTC +
Preference number: 3 (lower is better)
Translates to: FVLESDRQLPAS*HFRVDSLWPLV
Trigger: GACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAACTGCCTATCTGACTCTAAAACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CCA 72 bp AACCTAAGTTTCCTGCCTTCTGTTTATTCGACCCTCTaGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACC +
Preference number: 3 (lower is better)
Translates to: NLSFLPSVYSTL*RAGKFLYVVST
Trigger: GGTGCTGACCACATAGAGAAATTTACCAGCCCTCCAGAGGGTCGAATAAACAGAAGGCAGGAAACTTAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR-3UTR CAA 90 bp ACAGGGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATCATTTAGTTTGTGTTTaGATTCCCCATGTGCATCGC +
Preference number: 3 (lower is better)
Translates to: TGKIRDGPTHMYCTHFSDHLVCV*IPHVHR
Trigger: GCGATGCACATGGGGAATCAAAACACAAACTAAATG...ATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR-3UTR CAA 90 bp ACAGCAATCCTCTCCCTAGAAACCACAAACACAAGCTCAGCTTTGAATCTTGGACATTTAGTTTGTGTTTaGATTCCCCATGTGCATCGC +
Preference number: 3 (lower is better)
Translates to: TAILSLETTNTSSALNLGHLVCV*IPHVHR
Trigger: GCGATGCACATGGGGAATCAAAACACAAACTAAATG...TCCAAGATTCAAAGCTGAGCTTGTGTTTGTGGTTTCTAGGGAGAGGATTGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp CTGTCCAGCCCATGCTCAGCTCGGGCTCGCCCTGGGCACCTCACACCCACCTGCGCGGCCTTCAGCCCCTaGCAGGGGAGAGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LSSPCSARARPGHLTPTCAAFSP*QGREPR
Trigger: CCTGGGCTCTCTCCCCTGGCAGGGGCTGAAGGCCGC...GCAGGTGGGTGTGAGGTGCCCAGGGCGAGCCCGAGCTGAGCATGGGCTGGACAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp CTGTCCAGCCCATGCTCAGCTCGGGCTCGCCCTGGGCACCTCACACCCACCTGCGTACGTCGTGGGCGCTaGGGTCGGCAGCGGGCACCT +
Preference number: 4 (lower is better)
Translates to: LSSPCSARARPGHLTPTCVRRGR*GRQRAP
Trigger: AGGTGCCCGCTGCCGACCCCAGCGCCCACGACGTAC...GCAGGTGGGTGTGAGGTGCCCAGGGCGAGCCCGAGCTGAGCATGGGCTGGACAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp GTGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTGAGAGGCTCGCGGCCTTCAGCCCCTaGCAGGGGAGAGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: VGSSGSAGPPPLVGAERLAAFSP*QGREPR
Trigger: CCTGGGCTCTCTCCCCTGGCAGGGGCTGAAGGCCGC...GAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp GTGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTGAGAGGCTCGGTGTTGGCCGTGTGTaGGGTAGGGGTAAGGGGCGT +
Preference number: 4 (lower is better)
Translates to: VGSSGSAGPPPLVGAERLGVGRV*GRGKGR
Trigger: ACGCCCCTTACCCCTACCTCACACACGGCCAACACC...GAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp GCTCTTCGTCCCAGCCCCATGATAACTGAGCTCACACGGGGCCACGGTGGCAGCCGGTGCACGACAGACTaGAGACCACTGGAAGCCACC +
Preference number: 4 (lower is better)
Translates to: ALRPSPMITELTRGHGGSRCTTD*RPLEAT
Trigger: GGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCG...GCTGCCACCGTGGCCCCGTGTGAGCTCAGTTATCATGGGGCTGGGACGAAGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018274.10
CDS-3UTR GCA 90 bp TGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTGAGAGGCTCTCCGCTCAGCATCATCTaGAGCCCGGCTGGCACCAAA +
Preference number: 4 (lower is better)
Translates to: WDHQGAQVRHHWWELRGSPLSII*SPAGTK
Trigger: TTTGGTGCCAGCCGGGCTGCAGATGATGCTGAGCGG...AGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp TGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTGAGAGGCTCTACTGGGGCCCCACGGTaGAGCCGCATACTCACTTTC +
Preference number: 4 (lower is better)
Translates to: WDHQGAQVRHHWWELRGSTGAPR*SRILTF
Trigger: GAAAGTGAGTATGCGGCTGCACCGTGGGGCCCCAGT...AGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp AGCGGCAGAGCAGCCCAGCCCGCAGTGTGTCCAGCTGAAGACCACGCAGTGTGTACTGGGGCCCCACGGTaGAGCCGCATACTCACTTTC +
Preference number: 4 (lower is better)
Translates to: SGRAAQPAVCPAEDHAVCTGAPR*SRILTF
Trigger: GAAAGTGAGTATGCGGCTGCACCGTGGGGCCCCAGT...ACACACTGCGTGGTCTTCAGCTGGACACACTGCGGGCTGGGCTGCTCTGCCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp CTGTCCAGCCCATGCTCAGCTCGGGCTCGCCCTGGGCACCTCACACCCACCTGCGGCTGGCACCAAATTTaGGCATGTTCCAGTCGAACA +
Preference number: 4 (lower is better)
Translates to: LSSPCSARARPGHLTPTCGWHQI*ACSSRT
Trigger: TGTTCGACTGGAACATGCTCAAATTTGGTGCCAGCC...GCAGGTGGGTGTGAGGTGCCCAGGGCGAGCCCGAGCTGAGCATGGGCTGGACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp GAGGTGCTATATCACACATCAGCAGTGTGTCCCTCCCAACCCCGGGCCAGTGCTCTCCGAAGGAGCCGCTaGCGATCTTGCGGCCCAGTC +
Preference number: 4 (lower is better)
Translates to: EVLYHTSAVCPSQPRASALRRSR*RSCGPV
Trigger: GACTGGGCCGCAAGATCGGCAGCGGCTCCTTCGGAG...AGCACTGGCCCGGGGTTGGGAGGGACACACTGCTGATGTGTGATATAGCACCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCCTTGGCGGGCCGCGTaGAGCCGGAGAGACGCCATG +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPAPWRAA*SRRDAM
Trigger: CATGGCGTCTCTCCGGCTGCACGCGGCCCGCCAAGG...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp TTTGGCCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCTGGGGGAGCCACTTCCTaGGTTCCCCGCAGACGGCCG +
Preference number: 4 (lower is better)
Translates to: FGHWSLWANHGVFLGQPAGGATS*VPRRRP
Trigger: CGGCCGTCTGCGGGGAACCCAGGAAGTGGCTCCCCC...AGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp TTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTGGCCTGGAGAGCTCCCGCTCCGAAGGAGCCGCTaGCGATCTTGCGGCCCAGTC +
Preference number: 4 (lower is better)
Translates to: LCFDSPCASLGEWPGELPLRRSR*RSCGPV
Trigger: GACTGGGCCGCAAGATCGGCAGCGGCTCCTTCGGAG...CGGGAGCTCTCCAGGCCACTCACCCAGCGATGCACATGGGGAATCAAAACACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp AATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGGGAGCCACTTCCTaGGTTCCCCGCAGACGGCCG +
Preference number: 4 (lower is better)
Translates to: NFSMWSAPADLCPAHAQLGGATS*VPRRRP
Trigger: CGGCCGTCTGCGGGGAACCCAGGAAGTGGCTCCCCC...GAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp GCTCTTCGTCCCAGCCCCATGATAACTGAGCTCACACGGGGCCACGGTGGCAGCATCCTCTCATACTTCTaGCTCTTGGTGGCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: ALRPSPMITELTRGHGGSILSYF*LLVAAF
Trigger: GAAGGCCGCCACCAAGAGGCAGAAGTATGAGAGGAT...GCTGCCACCGTGGCCCCGTGTGAGCTCAGTTATCATGGGGCTGGGACGAAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp ACTGGTAGCTGCGGTGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGCAGAAGGATAGCCCTTaGACAGCACTTCAATGGGAG +
Preference number: 4 (lower is better)
Translates to: TGSCGGIIRERRSATTGGQKDSP*TALQWE
Trigger: CTCCCATTGAAGTGCTGTGCAAGGGCTATCCTTCTG...CCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCACCGCAGCTACCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp TTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGCCGCTCAGCATCATCTaGAGCCCGGCTGGCACCAAA +
Preference number: 4 (lower is better)
Translates to: FSMWSAPADLCPAHAQLGPLSII*SPAGTK
Trigger: TTTGGTGCCAGCCGGGCTGCAGATGATGCTGAGCGG...CCCGAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp CCAGAACCACAGGTATCAACAAGAACACTTGCCGGGCAGGCCTGCCACTGGAGAACTTCTGCCTCTTGGTaGCGGCCTTCAGCCCCTGCC +
Preference number: 4 (lower is better)
Translates to: PEPQVSTRTLAGQACHWRTSASW*RPSAPA
Trigger: GGCAGGGGCTGAAGGCCGCCACCAAGAGGCAGAAGT...TCTCCAGTGGCAGGCCTGCCCGGCAAGTGTTCTTGTTGATACCTGTGGTTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CAA 72 bp ATACCCCTCCAGAACCACAGGTATCAACAAGAACACTaGCCGGGCAGGCCTGCCACTGGAGAGGGGAGGACC +
Preference number: 4 (lower is better)
Translates to: IPLQNHRYQQEH*PGRPATGEGRT
Trigger: GGTCCTCCCCTCTCCAGTGGCAGGCCTGCCCGGCAAGTGTTCTTGTTGATACCTGTGGTTCTGGAGGGGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp ACTTCAGGGTTGATTCCCTTTGGCCACTGGTCCCTCTGGGCAAACCATGGTGTGAGCCGCTGCCGATCTTaGGGCCCAGTCGGTACCTGT +
Preference number: 4 (lower is better)
Translates to: TSGLIPFGHWSLWANHGVSRCRS*GPVGTC
Trigger: ACAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCT...CACACCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GTCCATTTAGTTTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTGGCCTGGCGGCCTTCAGCCCCTaGCAGGGGAGAGAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: VHLVCVLIPHVHRWVSGLAAFSP*QGREPR
Trigger: CCTGGGCTCTCTCCCCTGGCAGGGGCTGAAGGCCGC...CAGGCCACTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTAAATGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp TCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGCGTAGCTCCATCACCATaGCATTGTAGTCCCCCTCAG +
Preference number: 4 (lower is better)
Translates to: SLCGQHLLTSVQPMLSSGVAPSP*HCSPPQ
Trigger: CTGAGGGGGACTACAATGTCATGGTGATGGAGCTAC...GCCCGAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR TCA 90 bp GTGCACGACAGACTGAAGACCACTGGAAGCCACCCGACCGGGAATCCAGTGCTGAGCGTGCTGTCCCTGTaGGGTTCTTGTTCTCTCGAT +
Preference number: 4 (lower is better)
Translates to: VHDRLKTTGSHPTGNPVLSVLSL*GSCSLD
Trigger: ATCGAGAGAACAAGAACCTCACAGGGACAGCACGCT...CAGCACTGGATTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp AATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGTGTTGGCCGTGTGTaGGGTAGGGGTAAGGGGCGT +
Preference number: 4 (lower is better)
Translates to: NFSMWSAPADLCPAHAQLGVGRV*GRGKGR
Trigger: ACGCCCCTTACCCCTACCTCACACACGGCCAACACC...GAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp AATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCAGCCGCTGCCGATCTTaGGGCCCAGTCGGTACCTGT +
Preference number: 4 (lower is better)
Translates to: NFSMWSAPADLCPAHAQLSRCRS*GPVGTC
Trigger: ACAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCT...GAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp TGGCACTTCAGGGTTGATTCCCTTTGGCCACTGGTCCCTCTGGGCAAACCATGGCATACTTCTGCCTCTTaGTGGCGGCCTTCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: WHFRVDSLWPLVPLGKPWHTSAS*WRPSAP
Trigger: AGGGGCTGAAGGCCGCCACCAAGAGGCAGAAGTATG...CCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp ACAAACGCACAGCTCAGAGACTGGTCACCAAGACACAGGTTGATACACACATTCGGGGGAGCCACTTCCTaGGTTCCCCGCAGACGGCCG +
Preference number: 4 (lower is better)
Translates to: TNAQLRDWSPRHRLIHTFGGATS*VPRRRP
Trigger: CGGCCGTCTGCGGGGAACCCAGGAAGTGGCTCCCCC...GAATGTGTGTATCAACCTGTGTCTTGGTGACCAGTCTCTGAGCTGTGCGTTTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp TTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTGGCCTGGAGAGCTCCCGCAGACTGAAGACCACTaGAAGCCACCCGACCGGGAA +
Preference number: 4 (lower is better)
Translates to: LCFDSPCASLGEWPGELPQTEDH*KPPDRE
Trigger: TTCCCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTG...CGGGAGCTCTCCAGGCCACTCACCCAGCGATGCACATGGGGAATCAAAACACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018274.10
CDS-3UTR TCA 90 bp GAGGTGCTATATCACACATCAGCAGTGTGTCCCTCCCAACCCCGGGCCAGTGCTGTAGCTCCATCACCATaGCATTGTAGTCCCCCTCAG +
Preference number: 4 (lower is better)
Translates to: EVLYHTSAVCPSQPRASAVAPSP*HCSPPQ
Trigger: CTGAGGGGGACTACAATGTCATGGTGATGGAGCTAC...AGCACTGGCCCGGGGTTGGGAGGGACACACTGCTGATGTGTGATATAGCACCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp CACGCCATGGCAGTTGTACCTGCTCTGATGACTGCAGGCTATCAGTTTACAGTGGGTGTTGGCCGTGTGTaGGGTAGGGGTAAGGGGCGT +
Preference number: 4 (lower is better)
Translates to: HAMAVVPALMTAGYQFTVGVGRV*GRGKGR
Trigger: ACGCCCCTTACCCCTACCTCACACACGGCCAACACC...CACTGTAAACTGATAGCCTGCAGTCATCAGAGCAGGTACAACTGCCATGGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GTGGCACCACACCTTTCTGGAGGTCACGCAGCATGTGGAGGTGAAGGTTTGTTTCCGCTCAGCATCATCTaGAGCCCGGCTGGCACCAAA +
Preference number: 4 (lower is better)
Translates to: VAPHLSGGHAACGGEGLFPLSII*SPAGTK
Trigger: TTTGGTGCCAGCCGGGCTGCAGATGATGCTGAGCGG...AAACAAACCTTCACCTCCACATGCTGCGTGACCTCCAGAAAGGTGTGGTGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp GGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATGGGGACTTCTGCCTCTTGGTaGCGGCCTTCAGCCCCTGCC +
Preference number: 4 (lower is better)
Translates to: GKSEMDPHTCTAPTSQMGTSASW*RPSAPA
Trigger: GGCAGGGGCTGAAGGCCGCCACCAAGAGGCAGAAGT...CCCCATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp TGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTGAGAGGCTCTTGCACAGCACTTCAATaGGAGTGGACATCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: WDHQGAQVRHHWWELRGSCTALQ*EWTSSS
Trigger: AGAAGAAGATGTCCACTCCCATTGAAGTGCTGTGCA...AGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp TGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTGAGAGGCTCTGAGACTAAACTTCCTTaGACAGAAGTTGAACAGGTC +
Preference number: 4 (lower is better)
Translates to: WDHQGAQVRHHWWELRGSETKLP*TEVEQV
Trigger: GACCTGTTCAACTTCTGTTCAAGGAAGTTTAGTCTC...AGAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGACTGGGGCCCCACGGTaGAGCCGCATACTCACTTTC +
Preference number: 4 (lower is better)
Translates to: VNFSMWSAPADLCPAHAQTGAPR*SRILTF
Trigger: GAAAGTGAGTATGCGGCTGCACCGTGGGGCCCCAGT...CTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp CCAGAACCACAGGTATCAACAAGAACACTTGCCGGGCAGGCCTGCCACTGGAGATCTGTGAGGTGGACATaGGAGAGGTATCTTGTCGGC +
Preference number: 4 (lower is better)
Translates to: PEPQVSTRTLAGQACHWRSVRWT*ERYLVG
Trigger: GCCGACAAGATACCTCTCGCATGTCCACCTCACAGA...TCTCCAGTGGCAGGCCTGCCCGGCAAGTGTTCTTGTTGATACCTGTGGTTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCAGCGTGCTGTCCCTGTaGGGTTCTTGTTCTCTCGAT +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPASVLSL*GSCSLD
Trigger: ATCGAGAGAACAAGAACCTCACAGGGACAGCACGCT...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR TCA 90 bp CCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCTCCCTGGATGGAACAGATTTCTaGAGAGCTGTCTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: PLVPLGKPWCVSRTASSLDGTDF*RAVSGR
Trigger: CCTACCTGAGACAGCTCTTCAGAAATCTGTTCCATC...CAGGGAGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp AGAGTTCTCATCGGTGCACGACAGACTGAAGACCACTGGAAGCCACCCGACCGGGATGGAACAGATTTCTaGAGAGCTGTCTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: RVLIGARQTEDHWKPPDRDGTDF*RAVSGR
Trigger: CCTACCTGAGACAGCTCTTCAGAAATCTGTTCCATC...CCGGTCGGGTGGCTTCCAGTGGTCTTCAGTCTGTCGTGCACCGATGAGAACTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp CCAGAACCACAGGTATCAACAAGAACACTTGCCGGGCAGGCCTGCCACTGGAGAGGCTGGCACCAAATTTaGGCATGTTCCAGTCGAACA +
Preference number: 4 (lower is better)
Translates to: PEPQVSTRTLAGQACHWRGWHQI*ACSSRT
Trigger: TGTTCGACTGGAACATGCTCAAATTTGGTGCCAGCC...TCTCCAGTGGCAGGCCTGCCCGGCAAGTGTTCTTGTTGATACCTGTGGTTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp TTGCAGAGTAACCAGTTCAGGATTCAGAAATCAGCACCCACAGGCTCAGATGGCCCGACCGGGAATCTGTaGGGTGGACATGCGAGAGGT +
Preference number: 4 (lower is better)
Translates to: LQSNQFRIQKSAPTGSDGPTGNL*GGHARG
Trigger: ACCTCTCGCATGTCCACCTCACAGATTCCCGGTCGG...GCCATCTGAGCCTGTGGGTGCTGATTTCTGAATCCTGAACTGGTTACTCTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018274.10
CDS-3UTR GCA 90 bp ACAAACGCACAGCTCAGAGACTGGTCACCAAGACACAGGTTGATACACACATTCAGCCGCTGCCGATCTTaGGGCCCAGTCGGTACCTGT +
Preference number: 4 (lower is better)
Translates to: TNAQLRDWSPRHRLIHTFSRCRS*GPVGTC
Trigger: ACAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCT...GAATGTGTGTATCAACCTGTGTCTTGGTGACCAGTCTCTGAGCTGTGCGTTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCTCTGTGAGGTGGACATaGGAGAGGTATCTTGTCGGC +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPASVRWT*ERYLVG
Trigger: GCCGACAAGATACCTCTCGCATGTCCACCTCACAGA...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp ACTTCCAATGGTCCTAGTCTCGGCACAACCCAGCAGGGCCAGGCTGAACCTGGAGAGAAGCCTTGGCGATaGAACAGATTTCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: TSNGPSLGTTQQGQAEPGEKPWR*NRFLKS
Trigger: GCTCTTCAGAAATCTGTTCCATCGCCAAGGCTTCTC...TCCAGGTTCAGCCTGGCCCTGCTGGGTTGTGCCGAGACTAGGACCATTGGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp TTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGGAGAAGCCTTGGCGATaGAACAGATTTCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: FSMWSAPADLCPAHAQLGEKPWR*NRFLKS
Trigger: GCTCTTCAGAAATCTGTTCCATCGCCAAGGCTTCTC...CCCGAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR CAA 72 bp CAGATAGGCAGTTACCTGCTTCTTGGCACTTCAGGGTaGATTCCCTTTGGCCACTGGTCCCTCTGGGCAAAC +
Preference number: 4 (lower is better)
Translates to: QIGSYLLLGTSG*IPFGHWSLWAN
Trigger: GTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAACTGCCTATCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCTCTTTCCCAGCCCCATaGGGAAGTTATCTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPASFPAP*GSYLAS
Trigger: TGAAGCCAGATAACTTCCTCATGGGGCTGGGAAAGA...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR TCA 90 bp TCCTGCCTTCTGTTTATTCGACCCTCTGGAGGGCTGGTAAATTTCTCTATGTGGGTCCCTGCTCCTCTGTaGGGTGGACATGCGAGAGGT +
Preference number: 4 (lower is better)
Translates to: SCLLFIRPSGGLVNFSMWVPAPL*GGHARG
Trigger: ACCTCTCGCATGTCCACCTCACAGAGGAGCAGGGAC...CCACATAGAGAAATTTACCAGCCCTCCAGAGGGTCGAATAAACAGAAGGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp GCCTCTGCTCTTCGTCCCAGCCCCATGATAACTGAGCTCACACGGGGCCACGGTTCATTTTGTAGATCTTaGTCTCAATGTGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: ASALRPSPMITELTRGHGSFCRS*SQCGAE
Trigger: CTCAGCTCCACATTGAGAGCAAGATCTACAAAATGA...ACCGTGGCCCCGTGTGAGCTCAGTTATCATGGGGCTGGGACGAAGAGCAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp ACTTCCAATGGTCCTAGTCTCGGCACAACCCAGCAGGGCCAGGCTGAACCTGGAGGTGTTCGAAAGGAATaGTATTCTGTGAGGTGGACA +
Preference number: 4 (lower is better)
Translates to: TSNGPSLGTTQQGQAEPGGVRKE*YSVRWT
Trigger: TGTCCACCTCACAGAATAGCATTCCTTTCGAACACC...TCCAGGTTCAGCCTGGCCCTGCTGGGTTGTGCCGAGACTAGGACCATTGGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp GCTCTTCGTCCCAGCCCCATGATAACTGAGCTCACACGGGGCCACGGTGGCAGCATACGACTTATCATTTaGTCAGCAAGCAACAGAACA +
Preference number: 4 (lower is better)
Translates to: ALRPSPMITELTRGHGGSIRLII*SASNRT
Trigger: TGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTAT...GCTGCCACCGTGGCCCCGTGTGAGCTCAGTTATCATGGGGCTGGGACGAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp GTCCATTTAGTTTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTGGCCTGCATACTTCTGCCTCTTaGTGGCGGCCTTCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: VHLVCVLIPHVHRWVSGLHTSAS*WRPSAP
Trigger: AGGGGCTGAAGGCCGCCACCAAGAGGCAGAAGTATG...CAGGCCACTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTAAATGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCTGCTCCTCTGTGAGGTaGACATGCGAGAGGTATCTT +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPACSSVR*TCERYL
Trigger: AAGATACCTCTCGCATGTCCACCTCACAGAGGAGCA...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR CAA 72 bp CTGGCGATGGCAGCTCTTGGAGCCTGTCCATTTAGTTaGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAG +
Preference number: 4 (lower is better)
Translates to: LAMAALGACPFS*CFDSPCASLGE
Trigger: CTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTAAATGGACAGGCTCCAAGAGCTGCCATCGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CAA 72 bp ATCCTCTCCCTAGAAACCACAAACACAAGCTCAGCTTaGAATCTTGGAGCTCTCCAGCAGCCTAGAGGGGCC +
Preference number: 4 (lower is better)
Translates to: ILSLETTNTSSA*NLGALQQPRGA
Trigger: GGCCCCTCTAGGCTGCTGGAGAGCTCCAAGATTCAAAGCTGAGCTTGTGTTTGTGGTTTCTAGGGAGAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp CTGTTTATTCGACCCTCTGGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTCATACTTCTGCCTCTTaGTGGCGGCCTTCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: LFIRPSGGLVNFSMWSAPHTSAS*WRPSAP
Trigger: AGGGGCTGAAGGCCGCCACCAAGAGGCAGAAGTATG...AGGTGCTGACCACATAGAGAAATTTACCAGCCCTCCAGAGGGTCGAATAAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp CCAGAACCACAGGTATCAACAAGAACACTTGCCGGGCAGGCCTGCCACTGGAGATGCACAGCACTTCAATaGGAGTGGACATCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: PEPQVSTRTLAGQACHWRCTALQ*EWTSSS
Trigger: AGAAGAAGATGTCCACTCCCATTGAAGTGCTGTGCA...TCTCCAGTGGCAGGCCTGCCCGGCAAGTGTTCTTGTTGATACCTGTGGTTCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp AATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGATGGAACAGATTTCTaGAGAGCTGTCTCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: NFSMWSAPADLCPAHAQLDGTDF*RAVSGR
Trigger: CCTACCTGAGACAGCTCTTCAGAAATCTGTTCCATC...GAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp GTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCAGAAGGATAGCCCTTaGACAGCACTTCAATGGGAG +
Preference number: 4 (lower is better)
Translates to: VNFSMWSAPADLCPAHAQQKDSP*TALQWE
Trigger: CTCCCATTGAAGTGCTGTGCAAGGGCTATCCTTCTG...CTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp GAGTCAGATAGGCAGTTACCTGCTTCTTGGCACTTCAGGGTTGATTCCCTTTGGTCTGTGAGGTGGACATaGGAGAGGTATCTTGTCGGC +
Preference number: 4 (lower is better)
Translates to: ESDRQLPASWHFRVDSLWSVRWT*ERYLVG
Trigger: GCCGACAAGATACCTCTCGCATGTCCACCTCACAGA...CCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAACTGCCTATCTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CAA 72 bp CCACACACATCCTCAACACTCACATGTGCCCCTCTCTaGCCTGCCTCCATTTTACATAGAAGCTCCAAGCCA +
Preference number: 4 (lower is better)
Translates to: PHTSSTLTCAPL*PASILHRSSKP
Trigger: TGGCTTGGAGCTTCTATGTAAAATGGAGGCAGGCAAGAGAGGGGCACATGTGAGTGTTGAGGATGTGTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
3UTR CAA 72 bp CCACTGGAGAGGGGAGGACCAACTCTGATAAAGGATTaGCAACAAAAATCTCAAACTCGCCCGACCCTCCCA +
Preference number: 4 (lower is better)
Translates to: PLERGGPTLIKD*QQKSQTRPTLP
Trigger: TGGGAGGGTCGGGCGAGTTTGAGATTTTTGTTGCAAATCCTTTATCAGAGTTGGTCCTCCCCTCTCCAGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp TCTGAGCAGAGAGCCCATGACAAACCCAAATGGCATCTGCATGAGACTATTCAGGTAGCTCCATCACCATaGCATTGTAGTCCCCCTCAG +
Preference number: 4 (lower is better)
Translates to: SEQRAHDKPKWHLHETIQVAPSP*HCSPPQ
Trigger: CTGAGGGGGACTACAATGTCATGGTGATGGAGCTAC...CTGAATAGTCTCATGCAGATGCCATTTGGGTTTGTCATGGGCTCTCTGCTCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCGAGACTAAACTTCCTTaGACAGAAGTTGAACAGGTC +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPAETKLP*TEVEQV
Trigger: GACCTGTTCAACTTCTGTTCAAGGAAGTTTAGTCTC...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR TCA 90 bp AGTCAGATAGGCAGTTACCTGCTTCTTGGCACTTCAGGGTTGATTCCCTTTGGCTCTTTCCCAGCCCCATaGGGAAGTTATCTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: SQIGSYLLLGTSGLIPFGSFPAP*GSYLAS
Trigger: TGAAGCCAGATAACTTCCTCATGGGGCTGGGAAAGA...GCCAAAGGGAATCAACCCTGAAGTGCCAAGAAGCAGGTAACTGCCTATCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp ACAGGGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATAGCGTGCTGTCCCTGTaGGGTTCTTGTTCTCTCGAT +
Preference number: 4 (lower is better)
Translates to: TGKIRDGPTHMYCTHFSDSVLSL*GSCSLD
Trigger: ATCGAGAGAACAAGAACCTCACAGGGACAGCACGCT...ATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp TTGCAGAGTAACCAGTTCAGGATTCAGAAATCAGCACCCACAGGCTCAGATGGCGGCTGGCACCAAATTTaGGCATGTTCCAGTCGAACA +
Preference number: 4 (lower is better)
Translates to: LQSNQFRIQKSAPTGSDGGWHQI*ACSSRT
Trigger: TGTTCGACTGGAACATGCTCAAATTTGGTGCCAGCC...GCCATCTGAGCCTGTGGGTGCTGATTTCTGAATCCTGAACTGGTTACTCTGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GAGCCTGTCCATTTAGTTTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTATCCTCTCATACTTCTaGCTCTTGGTGGCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: EPVHLVCVLIPHVHRWVSILSYF*LLVAAF
Trigger: GAAGGCCGCCACCAAGAGGCAGAAGTATGAGAGGAT...ACTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTAAATGGACAGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp CACGCCATGGCAGTTGTACCTGCTCTGATGACTGCAGGCTATCAGTTTACAGTGGAGAAGCCTTGGCGATaGAACAGATTTCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: HAMAVVPALMTAGYQFTVEKPWR*NRFLKS
Trigger: GCTCTTCAGAAATCTGTTCCATCGCCAAGGCTTCTC...CACTGTAAACTGATAGCCTGCAGTCATCAGAGCAGGTACAACTGCCATGGCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCTCATTTTGTAGATCTTaGTCTCAATGTGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPASFCRS*SQCGAE
Trigger: CTCAGCTCCACATTGAGAGCAAGATCTACAAAATGA...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR GCA 90 bp TTCCTGCCTTCTGTTTATTCGACCCTCTGGAGGGCTGGTAAATTTCTCTATGTGATCCTCTCATACTTCTaGCTCTTGGTGGCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: FLPSVYSTLWRAGKFLYVILSYF*LLVAAF
Trigger: GAAGGCCGCCACCAAGAGGCAGAAGTATGAGAGGAT...CACATAGAGAAATTTACCAGCCCTCCAGAGGGTCGAATAAACAGAAGGCAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp CCAGAACCACAGGTATCAACAAGAACACTTGCCGGGCAGGCCTGCCACTGGAGAAGAAATTCAGGTATGTaGCAAATTCAGAAGGATAGC +
Preference number: 4 (lower is better)
Translates to: PEPQVSTRTLAGQACHWRRNSGM*QIQKDS
Trigger: GCTATCCTTCTGAATTTGCCACATACCTGAATTTCT...TCTCCAGTGGCAGGCCTGCCCGGCAAGTGTTCTTGTTGATACCTGTGGTTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GTCACTAGTAAAGCCATTGGTAACAGAGTAGATCAGCCATGCATTGTCTGCCCTCAGAAGGATAGCCCTTaGACAGCACTTCAATGGGAG +
Preference number: 4 (lower is better)
Translates to: VTSKAIGNRVDQPCIVCPQKDSP*TALQWE
Trigger: CTCCCATTGAAGTGCTGTGCAAGGGCTATCCTTCTG...AGGGCAGACAATGCATGGCTGATCTACTCTGTTACCAATGGCTTTACTAGTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp GGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCAGAAATTCAGGTATGTaGCAAATTCAGAAGGATAGC +
Preference number: 4 (lower is better)
Translates to: GGLVNFSMWSAPADLCPARNSGM*QIQKDS
Trigger: GCTATCCTTCTGAATTTGCCACATACCTGAATTTCT...GGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp AGCAGAGAGCCCATGACAAACCCAAATGGCATCTGCATGAGACTATTCAGTCTACGGGAATCTGTGAGGTaGACATGCGAGAGGTATCTT +
Preference number: 4 (lower is better)
Translates to: SREPMTNPNGICMRLFSLRESVR*TCERYL
Trigger: AAGATACCTCTCGCATGTCCACCTCACAGATTCCCG...TAGACTGAATAGTCTCATGCAGATGCCATTTGGGTTTGTCATGGGCTCTCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018274.10
CDS-3UTR TCA 90 bp ACAGCAATCCTCTCCCTAGAAACCACAAACACAAGCTCAGCTTTGAATCTTGGAAGGAATGCTATTCTGTaGGGTGGACATGCGAGAGGT +
Preference number: 4 (lower is better)
Translates to: TAILSLETTNTSSALNLGRNAIL*GGHARG
Trigger: ACCTCTCGCATGTCCACCTCACAGAATAGCATTCCT...TCCAAGATTCAAAGCTGAGCTTGTGTTTGTGGTTTCTAGGGAGAGGATTGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp TCCTGCCTTCTGTTTATTCGACCCTCTGGAGGGCTGGTAAATTTCTCTATGTGGTGCACAGCACTTCAATaGGAGTGGACATCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: SCLLFIRPSGGLVNFSMWCTALQ*EWTSSS
Trigger: AGAAGAAGATGTCCACTCCCATTGAAGTGCTGTGCA...CCACATAGAGAAATTTACCAGCCCTCCAGAGGGTCGAATAAACAGAAGGCAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
3UTR CAA 72 bp AGTCCCACGGAGTCAAGTCTCTGCACCCTAAAATGCTaGCAGAGTAACCAGTTCAGGATTCAGAAATCAGCA +
Preference number: 4 (lower is better)
Translates to: SPTESSLCTLKC*QSNQFRIQKSA
Trigger: TGCTGATTTCTGAATCCTGAACTGGTTACTCTGCAAGCATTTTAGGGTGCAGAGACTTGACTCCGTGGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp TCTGATAAAGGATTTGCAACAAAAATCTCAAACTCGCCCGACCCTCCCAACCTCTGCTATTCTGTGAGGTaGACATGCGAGAGGTATCTT +
Preference number: 4 (lower is better)
Translates to: SDKGFATKISNSPDPPNLCYSVR*TCERYL
Trigger: AAGATACCTCTCGCATGTCCACCTCACAGAATAGCA...GAGGTTGGGAGGGTCGGGCGAGTTTGAGATTTTTGTTGCAAATCCTTTATCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070575.14
CDS-3UTR TCA 90 bp ACTATTCAGTCTATTCTGCAACTTCCCAAGTTCAAAGGCATAGAGGAAACCAATTCTTTCCCAGCCCCATaGGGAAGTTATCTGGCTTCA +
Preference number: 4 (lower is better)
Translates to: TIQSILQLPKFKGIEETNSFPAP*GSYLAS
Trigger: TGAAGCCAGATAACTTCCTCATGGGGCTGGGAAAGA...ATTGGTTTCCTCTATGCCTTTGAACTTGGGAAGTTGCAGAATAGACTGAATAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GTCACTAGTAAAGCCATTGGTAACAGAGTAGATCAGCCATGCATTGTCTGCCCTTCATTTTGTAGATCTTaGTCTCAATGTGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: VTSKAIGNRVDQPCIVCPSFCRS*SQCGAE
Trigger: CTCAGCTCCACATTGAGAGCAAGATCTACAAAATGA...AGGGCAGACAATGCATGGCTGATCTACTCTGTTACCAATGGCTTTACTAGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp ACAGGGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATATACGACTTATCATTTaGTCAGCAAGCAACAGAACA +
Preference number: 4 (lower is better)
Translates to: TGKIRDGPTHMYCTHFSDIRLII*SASNRT
Trigger: TGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTAT...ATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CCA 90 bp TCCTGCCTTCTGTTTATTCGACCCTCTGGAGGGCTGGTAAATTTCTCTATGTGGATACGACTTATCATTTaGTCAGCAAGCAACAGAACA +
Preference number: 4 (lower is better)
Translates to: SCLLFIRPSGGLVNFSMWIRLII*SASNRT
Trigger: TGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTAT...CCACATAGAGAAATTTACCAGCCCTCCAGAGGGTCGAATAAACAGAAGGCAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CCA 90 bp ACAGGGAAAATCAGAGATGGACCCACACACATGTACTGCACCCACTTCTCAGATAGAAATTCAGGTATGTaGCAAATTCAGAAGGATAGC +
Preference number: 4 (lower is better)
Translates to: TGKIRDGPTHMYCTHFSDRNSGM*QIQKDS
Trigger: GCTATCCTTCTGAATTTGCCACATACCTGAATTTCT...ATCTGAGAAGTGGGTGCAGTACATGTGTGTGGGTCCATCTCTGATTTTCCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR GCA 90 bp GTACTCAATACGACTTATCATTTGGTCAGCAAGCAACAGAACAGTTTTGAGACTTCATTTTGTAGATCTTaGTCTCAATGTGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: VLNTTYHLVSKQQNSFETSFCRS*SQCGAE
Trigger: CTCAGCTCCACATTGAGAGCAAGATCTACAAAATGA...AGTCTCAAAACTGTTCTGTTGCTTGCTGACCAAATGATAAGTCGTATTGAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146837.2
CDS GCA 90 bp AGCGGCCGTTGGTGTCTGGCCGAGGCCGGTGCCCGGGCCCTCGGCTaGGGGGATGCCGAACGTCCACTCCGGCCCTCCGCAGGCCTCGGC +
Preference number: 5 (lower is better)
Translates to: SGRWCLAEAGARALG*GDAERPLRPSAGLG
Trigger: GCCGAGGCCTGCGGAGGGCCGGAGTGGACGTTCGGCATCCCCGCAGCCGAGGGCCCGGGCACCGGCCTCGGCCAGACACCAACGGCCGCT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154483.8
CDS GCA 90 bp CGTCGTGGGCGCTGGGGTCGGCAGCGGGCACCTTGGCGGGCCGCGTaGAGCCGGAGAGACGCCATGTCCCTGCTCCTCTGTGAGGTGGAC +
Preference number: 5 (lower is better)
Translates to: RRGRWGRQRAPWRAA*SRRDAMSLLLCEVD
Trigger: GTCCACCTCACAGAGGAGCAGGGACATGGCGTCTCTCCGGCTGCACGCGGCCCGCCAAGGTGCCCGCTGCCGACCCCAGCGCCCACGACG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS CCA 90 bp AACTTCTTCTCCCGCAGCAATGTCCGTACAGCGGCCGTTGGTGTCTaGCCGAGGCCGGTGCCCGGGCCCTCGGCTGCGGGGATGCCGAAC +
Preference number: 5 (lower is better)
Translates to: NFFSRSNVRTAAVGV*PRPVPGPSAAGMPN
Trigger: GTTCGGCATCCCCGCAGCCGAGGGCCCGGGCACCGGCCTCGGCCAGACACCAACGGCCGCTGTACGGACATTGCTGCGGGAGAAGAAGTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154483.8
CDS-3UTR CAA 90 bp GCTCTTCGTCCCAGCCCCATGATAACTGAGCTCACACGGGGCCACGGTGGCAGCGAGCCGCTGCCGATCTaGCGGCCCAGTCGGTACCTG +
Preference number: 5 (lower is better)
Translates to: ALRPSPMITELTRGHGGSEPLPI*RPSRYL
Trigger: CAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCTC...GCTGCCACCGTGGCCCCGTGTGAGCTCAGTTATCATGGGGCTGGGACGAAGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp CACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGCTCGCCCTGGGCACCTCATGCGAGAGGTATCTaGTCGGCCCGTGAGATCAGA +
Preference number: 5 (lower is better)
Translates to: HLLTSVQPMLSSGSPWAPHARGI*SAREIR
Trigger: TCTGATCTCACGGGCCGACAAGATACCTCTCGCATG...AGGTGCCCAGGGCGAGCCCGAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CAA 90 bp TGGCACTTCAGGGTTGATTCCCTTTGGCCACTGGTCCCTCTGGGCAAACCATGGGAGCCGCTGCCGATCTaGCGGCCCAGTCGGTACCTG +
Preference number: 5 (lower is better)
Translates to: WHFRVDSLWPLVPLGKPWEPLPI*RPSRYL
Trigger: CAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCTC...CCATGGTTTGCCCAGAGGGACCAGTGGCCAAAGGGAATCAACCCTGAAGTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp ACCTCTGTCCAGCCCATGCTCAGCTCGGGCTCGCCCTGGGCACCTCACACCCACCGGCTGGCACCAAATTaGAGCATGTTCCAGTCGAAC +
Preference number: 5 (lower is better)
Translates to: TSVQPMLSSGSPWAPHTHRLAPN*SMFQSN
Trigger: GTTCGACTGGAACATGCTCAAATTTGGTGCCAGCCG...GTGGGTGTGAGGTGCCCAGGGCGAGCCCGAGCTGAGCATGGGCTGGACAGAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CAA 90 bp GTGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGAGCTGAGAGGCTCCGGCTGGCACCAAATTaGAGCATGTTCCAGTCGAAC +
Preference number: 5 (lower is better)
Translates to: VGSSGSAGPPPLVGAERLRLAPN*SMFQSN
Trigger: GTTCGACTGGAACATGCTCAAATTTGGTGCCAGCCG...GAGCCTCTCAGCTCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp GTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGGAGCCGCTGCCGATCTaGCGGCCCAGTCGGTACCTG +
Preference number: 5 (lower is better)
Translates to: VNFSMWSAPADLCPAHAQEPLPI*RPSRYL
Trigger: CAGGTACCGACTGGGCCGCAAGATCGGCAGCGGCTC...CTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CAA 90 bp CTGGTAGCTGCGGTGGGATCATCAGGGAGCGCAGGTCCGCCACCACTGGTGGGATTGACACATTCAAGCTaGATGGCAACTTCTTCTCCC +
Preference number: 5 (lower is better)
Translates to: LVAAVGSSGSAGPPPLVGLTHSS*MATSSP
Trigger: GGGAGAAGAAGTTGCCATCAAGCTTGAATGTGTCAA...TCCCACCAGTGGTGGCGGACCTGCGCTCCCTGATGATCCCACCGCAGCTACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp CCACTGGTCCCTCTGGGCAAACCATGGTGTGTTTCTAGGACAGCCAGCTCCCTGGGGAGAGAGCCCAGGTaGAAGTACATCAGCACGTAC +
Preference number: 5 (lower is better)
Translates to: PLVPLGKPWCVSRTASSLGREPR*KYISTY
Trigger: GTACGTGCTGATGTACTTCAACCTGGGCTCTCTCCC...CAGGGAGCTGGCTGTCCTAGAAACACACCATGGTTTGCCCAGAGGGACCAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp TTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGGCATCCCGATACTTCTaGGCCAGCCCAAAGTCAATG +
Preference number: 5 (lower is better)
Translates to: FSMWSAPADLCPAHAQLGASRYF*ASPKSM
Trigger: CATTGACTTTGGGCTGGCCAAGAAGTATCGGGATGC...CCCGAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CAA 90 bp TCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGCCCATGCTCAGCTCGGGCGTCGTAGGAGAAGCCTaGGCGATGGAACAGATTTCT +
Preference number: 5 (lower is better)
Translates to: SLCGQHLLTSVQPMLSSGVVGEA*AMEQIS
Trigger: AGAAATCTGTTCCATCGCCAAGGCTTCTCCTACGAC...GCCCGAGCTGAGCATGGGCTGGACAGAGGTCAGCAGGTGCTGACCACATAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CAA 90 bp GCCTCTGCTCTTCGTCCCAGCCCCATGATAACTGAGCTCACACGGGGCCACGGTTTGACACATTCAAGCTaGATGGCAACTTCTTCTCCC +
Preference number: 5 (lower is better)
Translates to: ASALRPSPMITELTRGHGLTHSS*MATSSP
Trigger: GGGAGAAGAAGTTGCCATCAAGCTTGAATGTGTCAA...ACCGTGGCCCCGTGTGAGCTCAGTTATCATGGGGCTGGGACGAAGAGCAGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp TCTGGAGGGCTGGTAAATTTCTCTATGTGGTCAGCACCTGCTGACCTCTGTCCAGGGAGAGAGCCCAGGTaGAAGTACATCAGCACGTAC +
Preference number: 5 (lower is better)
Translates to: SGGLVNFSMWSAPADLCPGREPR*KYISTY
Trigger: GTACGTGCTGATGTACTTCAACCTGGGCTCTCTCCC...TGGACAGAGGTCAGCAGGTGCTGACCACATAGAGAAATTTACCAGCCCTCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS-3UTR CAA 90 bp GTGGCACCACACCTTTCTGGAGGTCACGCAGCATGTGGAGGTGAAGGTTTGTTTGTCGTAGGAGAAGCCTaGGCGATGGAACAGATTTCT +
Preference number: 5 (lower is better)
Translates to: VAPHLSGGHAACGGEGLFVVGEA*AMEQIS
Trigger: AGAAATCTGTTCCATCGCCAAGGCTTCTCCTACGAC...AAACAAACCTTCACCTCCACATGCTGCGTGACCTCCAGAAAGGTGTGGTGCCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp CACGCCATGGCAGTTGTACCTGCTCTGATGACTGCAGGCTATCAGTTTACAGTGGTCGTAGGAGAAGCCTaGGCGATGGAACAGATTTCT +
Preference number: 5 (lower is better)
Translates to: HAMAVVPALMTAGYQFTVVVGEA*AMEQIS
Trigger: AGAAATCTGTTCCATCGCCAAGGCTTCTCCTACGAC...CACTGTAAACTGATAGCCTGCAGTCATCAGAGCAGGTACAACTGCCATGGCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp ACAAACGCACAGCTCAGAGACTGGTCACCAAGACACAGGTTGATACACACATTCCATGCGAGAGGTATCTaGTCGGCCCGTGAGATCAGA +
Preference number: 5 (lower is better)
Translates to: TNAQLRDWSPRHRLIHTFHARGI*SAREIR
Trigger: TCTGATCTCACGGGCCGACAAGATACCTCTCGCATG...GAATGTGTGTATCAACCTGTGTCTTGGTGACCAGTCTCTGAGCTGTGCGTTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp TGTCCATTTAGTTTGTGTTTTGATTCCCCATGTGCATCGCTGGGTGAGTGGCCTGCATCCCGATACTTCTaGGCCAGCCCAAAGTCAATG +
Preference number: 5 (lower is better)
Translates to: CPFSLCFDSPCASLGEWPASRYF*ASPKSM
Trigger: CATTGACTTTGGGCTGGCCAAGAAGTATCGGGATGC...AGGCCACTCACCCAGCGATGCACATGGGGAATCAAAACACAAACTAAATGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp TCTGAGCAGAGAGCCCATGACAAACCCAAATGGCATCTGCATGAGACTATTCAGCGGCTGGCACCAAATTaGAGCATGTTCCAGTCGAAC +
Preference number: 5 (lower is better)
Translates to: SEQRAHDKPKWHLHETIQRLAPN*SMFQSN
Trigger: GTTCGACTGGAACATGCTCAAATTTGGTGCCAGCCG...CTGAATAGTCTCATGCAGATGCCATTTGGGTTTGTCATGGGCTCTCTGCTCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp GTCACTAGTAAAGCCATTGGTAACAGAGTAGATCAGCCATGCATTGTCTGCCCTGCATCCCGATACTTCTaGGCCAGCCCAAAGTCAATG +
Preference number: 5 (lower is better)
Translates to: VTSKAIGNRVDQPCIVCPASRYF*ASPKSM
Trigger: CATTGACTTTGGGCTGGCCAAGAAGTATCGGGATGC...AGGGCAGACAATGCATGGCTGATCTACTCTGTTACCAATGGCTTTACTAGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS-3UTR CAA 90 bp GGCTATCAGTTTACAGTGGGAAAGAGTAAGCAAGATGCCCAAATTAGGCTGATGGGGAGAGAGCCCAGGTaGAAGTACATCAGCACGTAC +
Preference number: 5 (lower is better)
Translates to: GYQFTVGKSKQDAQIRLMGREPR*KYISTY
Trigger: GTACGTGCTGATGTACTTCAACCTGGGCTCTCTCCC...CATCAGCCTAATTTGGGCATCTTGCTTACTCTTTCCCACTGTAAACTGATAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS CCA 90 bp CAGGTTTGTCATCAAAACGTAAGGAACGGCAGAAATTCAGGTATGTaGCAAATTCAGAAGGATAGCCCTTGCACAGCACTTCAATGGGAG +
Preference number: 5 (lower is better)
Translates to: QVCHQNVRNGRNSGM*QIQKDSPCTALQWE
Trigger: CTCCCATTGAAGTGCTGTGCAAGGGCTATCCTTCTGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTACGTTTTGATGACAAACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2
CDS-3UTR CAA 90 bp ACTATTCAGTCTATTCTGCAACTTCCCAAGTTCAAAGGCATAGAGGAAACCAATCATGCGAGAGGTATCTaGTCGGCCCGTGAGATCAGA +
Preference number: 5 (lower is better)
Translates to: TIQSILQLPKFKGIEETNHARGI*SAREIR
Trigger: TCTGATCTCACGGGCCGACAAGATACCTCTCGCATG...ATTGGTTTCCTCTATGCCTTTGAACTTGGGAAGTTGCAGAATAGACTGAATAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
CDS GCA 72 bp TGGTGTCTGGCCGAGGCCGGTGCCCGGGCCCTCGGCTaGGGGGATGCCGAACGTCCACTCCGGCCCTCCGCA +
Preference number: 6 (lower is better)
Translates to: WCLAEAGARALG*GDAERPLRPSA
Trigger: TGCGGAGGGCCGGAGTGGACGTTCGGCATCCCCGCAGCCGAGGGCCCGGGCACCGGCCTCGGCCAGACACCA
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154483.8
CDS GCA 72 bp TCCGTACAGCGGCCGTTGGTGTCTGGCCGAGGCCGGTaGCCGGGCCCTCGGCTGCGGGGATGCCGAACGTCC +
Preference number: 6 (lower is better)
Translates to: SVQRPLVSGRGR*PGPRLRGCRTS
Trigger: GGACGTTCGGCATCCCCGCAGCCGAGGGCCCGGGCACCGGCCTCGGCCAGACACCAACGGCCGCTGTACGGA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154483.8
CDS CCA 72 bp TCCCGCAGCAATGTCCGTACAGCGGCCGTTGGTGTCTaGCCGAGGCCGGTGCCCGGGCCCTCGGCTGCGGGG +
Preference number: 6 (lower is better)
Translates to: SRSNVRTAAVGV*PRPVPGPSAAG
Trigger: CCCCGCAGCCGAGGGCCCGGGCACCGGCCTCGGCCAGACACCAACGGCCGCTGTACGGACATTGCTGCGGGA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154483.8
CDS GCA 72 bp CGCTGGGGTCGGCAGCGGGCACCTTGGCGGGCCGCGTaGAGCCGGAGAGACGCCATGTCCCTGCTCCTCTGT +
Preference number: 6 (lower is better)
Translates to: RWGRQRAPWRAA*SRRDAMSLLLC
Trigger: ACAGAGGAGCAGGGACATGGCGTCTCTCCGGCTGCACGCGGCCCGCCAAGGTGCCCGCTGCCGACCCCAGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS CAA 90 bp TCAGTAGGTGGTACGTCGTGGGCGCTGGGGTCGGCAGCGGGCACCTaGGCGGGCCGCGTGCAGCCGGAGAGACGCCATGTCCCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: SVGGTSWALGSAAGT*AGRVQPERRHVPAP
Trigger: AGGAGCAGGGACATGGCGTCTCTCCGGCTGCACGCGGCCCGCCAAGGTGCCCGCTGCCGACCCCAGCGCCCACGACGTACCACCTACTGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239115.2
CDS CCA 72 bp CTTCTTCTCCCGCAGCAATGTCCGTACAGCGGCCGTTaGTGTCTGGCCGAGGCCGGTGCCCGGGCCCTCGGC +
Preference number: 6 (lower is better)
Translates to: LLLPQQCPYSGR*CLAEAGARALG
Trigger: GCCGAGGGCCCGGGCACCGGCCTCGGCCAGACACCAACGGCCGCTGTACGGACATTGCTGCGGGAGAAGAAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154483.8
CDS CAA 72 bp ACTTCTTCTCCCGCAGCAATGTCCGTACAGCGGCCGTaGGTGTCTGGCCGAGGCCGGTGCCCGGGCCCTCGG +
Preference number: 6 (lower is better)
Translates to: TSSPAAMSVQRP*VSGRGRCPGPR
Trigger: CCGAGGGCCCGGGCACCGGCCTCGGCCAGACACCAACGGCCGCTGTACGGACATTGCTGCGGGAGAAGAAGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154483.8
CDS TCA 72 bp CATGCGAGAGGTATCTTGTCGGCCCGTGAGATCAGATaGGGAGACGTTGACTGGGGCCCCACGGTGCAGCCG +
Preference number: 6 (lower is better)
Translates to: HARGILSAREIR*GDVDWGPTVQP
Trigger: CGGCTGCACCGTGGGGCCCCAGTCAACGTCTCCTCATCTGATCTCACGGGCCGACAAGATACCTCTCGCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2
CDS CAA 72 bp TCTCGTTCCATGCCAGAGACAGGCCTCGGAGAGGTGTaGGCCGTGTGTGAGGTAGGGGTAAGGGGCGTTGGG +
Preference number: 6 (lower is better)
Translates to: SRSMPETGLGEV*AVCEVGVRGVG
Trigger: CCCAACGCCCCTTACCCCTACCTCACACACGGCCAACACCTCTCCGAGGCCTGTCTCTGGCATGGAACGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2
CDS GCA 72 bp GGTGCAGCCGCATACTCACTTTCCGTTCTCGTTCCATaGCAGAGACAGGCCTCGGAGAGGTGTTGGCCGTGT +
Preference number: 6 (lower is better)
Translates to: GAAAYSLSVLVP*QRQASERCWPC
Trigger: ACACGGCCAACACCTCTCCGAGGCCTGTCTCTGGCATGGAACGAGAACGGAAAGTGAGTATGCGGCTGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2
CDS CAA 72 bp GTATCTTGTCGGCCCGTGAGATCAGATGAGGAGACGTaGACTGGGGCCCCACGGTGCAGCCGCATACTCACT +
Preference number: 6 (lower is better)
Translates to: VSCRPVRSDEET*TGAPRCSRILT
Trigger: AGTGAGTATGCGGCTGCACCGTGGGGCCCCAGTCAACGTCTCCTCATCTGATCTCACGGGCCGACAAGATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2
CDS CAA 90 bp ATGCGAGAGGTATCTTGTCGGCCCGTGAGATCAGATGAGGAGACGTaGACTGGGGCCCCACGGTGCAGCCGCATACTCACTTTCCGTTCT +
Preference number: 6 (lower is better)
Translates to: MREVSCRPVRSDEET*TGAPRCSRILTFRS
Trigger: AGAACGGAAAGTGAGTATGCGGCTGCACCGTGGGGCCCCAGTCAACGTCTCCTCATCTGATCTCACGGGCCGACAAGATACCTCTCGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2
CDS GCA 72 bp TTCTTCTCGATCCCGGCGTTCCCGCTCAGCATCATCTaGAGCCCGGCTGGCACCAAATTTGAGCATGTTCCA +
Preference number: 6 (lower is better)
Translates to: FFSIPAFPLSII*SPAGTKFEHVP
Trigger: TGGAACATGCTCAAATTTGGTGCCAGCCGGGCTGCAGATGATGCTGAGCGGGAACGCCGGGATCGAGAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2
CDS CCA 72 bp CATCAAAACGTAAGGAACGGCAGAAATTCAGGTATGTaGCAAATTCAGAAGGATAGCCCTTGCACAGCACTT +
Preference number: 6 (lower is better)
Translates to: HQNVRNGRNSGM*QIQKDSPCTAL
Trigger: AAGTGCTGTGCAAGGGCTATCCTTCTGAATTTGCCACATACCTGAATTTCTGCCGTTCCTTACGTTTTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000018274.10
ENSMUST00000070575.14
ENSMUST00000239115.2