Pregenerated sensors for CSNK1A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024576Ensembl transcript IDs: ENSMUST00000163205.8, ENSMUST00000165123.8, ENSMUST00000166990.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGTTGAACTCTAAGGCACCAGGAATAAGGAATGATGCTGTGCTCTaGCAGTTCTACTCCTCAGAAGCACTACAAGTGCCAGAGAGAGAC | + |
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Preference number: 1 (lower is better) Translates to: ELNSKAPGIRNDAVL*QFYSSEALQVPERD Trigger: GTCTCTCTCTGGCACTTGTAGTGCTTCTGAGGAGTAGAACTGTCAGAGCACAGCATCATTCCTTATTCCTGGTGCCTTAGAGTTCAACTC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR TCA 90 bp | ATACAGACTCACAGAAAGGAAGGCCTCAAGTTTAAAGTTAGTAACTaGGCTCCTGGGGTCAGGATGACATCAGGTCAGTTTATTTTTCAA | + |
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Preference number: 1 (lower is better) Translates to: IQTHRKEGLKFKVSN*APGVRMTSGQFIFQ Trigger: TTGAAAAATAAACTGACCTGATGTCATCCTGACCCCAGGAGCTCAGTTACTAACTTTAAACTTGAGGCCTTCCTTTCTGTGAGTCTGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR CCA 90 bp | GGAAACATACTAACTCAGTGGATCCAACTTCTCGTCTTTAATACCTaGATAAAGCAGGACAAAAATTCTGCTTGTTTATTAAGAAACACA | + |
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Preference number: 1 (lower is better) Translates to: GNILTQWIQLLVFNT*IKQDKNSACLLRNT Trigger: TGTGTTTCTTAATAAACAAGCAGAATTTTTGTCCTGCTTTATCCAGGTATTAAAGACGAGAAGTTGGATCCACTGAGTTAGTATGTTTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR GCA 90 bp | GCTTGCACAAAGCAGGCAGGTTTCAGTAGGGAAGCCCCAGAGAGGGAGTCAGTACAGAAGCACTACAAGTaGCAGAGAGAGACAGAGATG | + |
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Preference number: 2 (lower is better) Translates to: ACTKQAGFSREAPERESVQKHYK*QRETEM Trigger: CATCTCTGTCTCTCTCTGGCACTTGTAGTGCTTCTG...TACTGACTCCCTCTCTGGGGCTTCCCTACTGAAACCTGCCTGCTTTGTGCAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR TCA 90 bp | GCTTGCACAAAGCAGGCAGGTTTCAGTAGGGAAGCCCCAGAGAGGGAGTCAGTAACCAGGAATAAGGAATaGTGCTGTGCTCTGACAGTT | + |
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Preference number: 2 (lower is better) Translates to: ACTKQAGFSREAPERESVTRNKE*CCALTV Trigger: AACTGTCAGAGCACAGCATCATTCCTTATTCCTGGT...TACTGACTCCCTCTCTGGGGCTTCCCTACTGAAACCTGCCTGCTTTGTGCAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR GCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAGGCGGCAGAAGTCAATaGCAAAGCTCCCACAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGGGRSQ*QSSHSC Trigger: ACAGCTGTGGGAGCTTTGGCATTGACTTCTGCCGCC...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR-3UTR TCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAGGGGTAGTGTGCCTGTaGGCTACAAACAGAAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGGVVCL*ATNRKP Trigger: TGGCTTTCTGTTTGTAGCTCACAGGCACACTACCCC...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR-3UTR TCA 90 bp | GCTTGCACAAAGCAGGCAGGTTTCAGTAGGGAAGCCCCAGAGAGGGAGTCAGTATCTAGGATTTTGGATTaGTTGGCAATACCATATTCC | + |
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Preference number: 2 (lower is better) Translates to: ACTKQAGFSREAPERESVSRILD*LAIPYS Trigger: GGAATATGGTATTGCCAATCAATCCAAAATCCTAGA...TACTGACTCCCTCTCTGGGGCTTCCCTACTGAAACCTGCCTGCTTTGTGCAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR CCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGATATTCACAAGGACAGTaGCTACAGCTCAGGATCCGC | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGYSQGQ*LQLRIR Trigger: GCGGATCCTGAGCTGTAGCCACTGTCCTTGTGAATA...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR CAA 90 bp | CAAGTGCCAGAGAGAGACAGAGATGGACTAGCAGTGGAATGGCATTaGCCTCAATTATCTTCAACTGATAGTCTAACTGCAGGCTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: QVPERDRDGLAVEWH*PQLSSTDSLTAGFR Trigger: CCTGAAGCCTGCAGTTAGACTATCAGTTGAAGATAATTGAGGCAAATGCCATTCCACTGCTAGTCCATCTCTGTCTCTCTCTGGCACTTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR CAA 90 bp | AGAAGTCTATCTGTGTGGACCTGCCAGTTCAGTCTGTGGTCAACATaGTTTAGGGACCGGCTGAAGGTTAGTCTAACAATATTCCTGGTA | + |
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Preference number: 2 (lower is better) Translates to: RSLSVWTCQFSLWST*FRDRLKVSLTIFLV Trigger: TACCAGGAATATTGTTAGACTAACCTTCAGCCGGTCCCTAAACAATGTTGACCACAGACTGAACTGGCAGGTCCACACAGATAGACTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166990.8 |
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| 3UTR-3UTR GCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGATCCAATCGTCTGCTCTaGTGCTTCTCTTCCACAATT | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGSNRLL*CFSSTI Trigger: AATTGTGGAAGAGAAGCAGCAGAGCAGACGATTGGA...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGGAGTCAGTAACAGAAGGAAGCAGGAGTTGAACTCTAAGGCACCAGGAATAGCCAAGACTCACCTCTaGAAATTAGATCATGTTCAC | + |
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Preference number: 2 (lower is better) Translates to: EGVSNRRKQELNSKAPGIAKTHL*KLDHVH Trigger: GTGAACATGATCTAATTTCCAGAGGTGAGTCTTGGC...TATTCCTGGTGCCTTAGAGTTCAACTCCTGCTTCCTTCTGTTACTGACTCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGGAGTCAGTAACAGAAGGAAGCAGGAGTTGAACTCTAAGGCACCAGGAATAGGACTAGCAGTGGAATaGCATTTGCCTCAATTATCT | + |
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Preference number: 2 (lower is better) Translates to: EGVSNRRKQELNSKAPGIGLAVE*HLPQLS Trigger: AGATAATTGAGGCAAATGCCATTCCACTGCTAGTCC...TATTCCTGGTGCCTTAGAGTTCAACTCCTGCTTCCTTCTGTTACTGACTCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR TCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGATTCATGCCGTTCTTCTaGAATGAGATCTCAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGFMPFF*NEISKQ Trigger: CTGCTTTGAGATCTCATTTCAGAAGAACGGCATGAA...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR-3UTR GCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAGCTGAAGACTGTTCATaGCGTTCTTCTGAAATGAGA | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGAEDCS*RSSEMR Trigger: TCTCATTTCAGAAGAACGGCATGAACAGTCTTCAGC...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR-3UTR GCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAGCAGAGTCTTTCAAATaGTCAAACACTGGAATCTTT | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGAESFK*SNTGIF Trigger: AAAGATTCCAGTGTTTGAGCATTTGAAAGACTCTGC...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCAGAACATGATAAGACCATGTACATGTAATAATGTGCACGACCACTGTGTCAGAGAGAGACAGAGATaGACTAGCAGTGGAATGGCA | + |
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Preference number: 2 (lower is better) Translates to: FQNMIRPCTCNNVHDHCVRERQR*TSSGMA Trigger: TGCCATTCCACTGCTAGTCCATCTCTGTCTCTCTCT...GACACAGTGGTCGTGCACATTATTACATGTACATGGTCTTATCATGTTCTGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR CCA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAAAAATTAGGGAAAGCTaGACATGGTGGCTCATTTTT | + |
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Preference number: 2 (lower is better) Translates to: SFSWIRETTEEQPRKTGGKIRES*TWWLIF Trigger: AAAAATGAGCCACCATGTCCAGCTTTCCCTAATTTT...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAATTTGATTTTGGAAGCTATACTGAGCTTTGCAATTATCAAGTTGCTCTGCTTAAAACCACCTCCTTaGTCTAACACTGTTAGAACT | + |
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Preference number: 2 (lower is better) Translates to: ENLILEAILSFAIIKLLCLKPPP*SNTVRT Trigger: AGTTCTAACAGTGTTAGATCAAGGAGGTGGTTTTAA...GCAGAGCAACTTGATAATTGCAAAGCTCAGTATAGCTTCCAAAATCAAATTCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAATTTGATTTTGGAAGCTATACTGAGCTTTGCAATTATCAAGTTGCTCTGCGGATTTTGGATTGATTaGCAATACCATATTCCCAAC | + |
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Preference number: 2 (lower is better) Translates to: ENLILEAILSFAIIKLLCGFWID*QYHIPN Trigger: GTTGGGAATATGGTATTGCCAATCAATCCAAAATCC...GCAGAGCAACTTGATAATTGCAAAGCTCAGTATAGCTTCCAAAATCAAATTCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR CCA 72 bp | AACACTTTCACTGTCATCAGTTCATCTGCTAGTCAGTaGCGGCAGAAGTCAATGCCAAAGCTCCCACAGCTG | + |
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Preference number: 3 (lower is better) Translates to: NTFTVISSSASQ*RQKSMPKLPQL Trigger: CAGCTGTGGGAGCTTTGGCATTGACTTCTGCCGCCACTGACTAGCAGATGAACTGATGACAGTGAAAGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| 3UTR CCA 72 bp | AGAAGTCTATCTGTGTGGACCTGCCAGTTCAGTCTGTaGTCAACATTGTTTAGGGACCGGCTGAAGGTTAGT | + |
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Preference number: 3 (lower is better) Translates to: RSLSVWTCQFSL*STLFRDRLKVS Trigger: ACTAACCTTCAGCCGGTCCCTAAACAATGTTGACCACAGACTGAACTGGCAGGTCCACACAGATAGACTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166990.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCAGAACATGATAAGACCATGTACATGTAATAATGTGCACGACCACTGTGTCAGAAGGAAGCAGGAGTaGAACTCTAAGGCACCAGGA | + |
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Preference number: 3 (lower is better) Translates to: FQNMIRPCTCNNVHDHCVRRKQE*NSKAPG Trigger: TCCTGGTGCCTTAGAGTTCAACTCCTGCTTCCTTCT...GACACAGTGGTCGTGCACATTATTACATGTACATGGTCTTATCATGTTCTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCAGAACATGATAAGACCATGTACATGTAATAATGTGCACGACCACTGTGTCGCAGTGGAATGGCATTaGCCTCAATTATCTTCAACT | + |
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Preference number: 3 (lower is better) Translates to: FQNMIRPCTCNNVHDHCVAVEWH*PQLSST Trigger: AGTTGAAGATAATTGAGGCAAATGCCATTCCACTGC...GACACAGTGGTCGTGCACATTATTACATGTACATGGTCTTATCATGTTCTGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAAGCGTGCACAGGTACTGCTGGGCTGCTTTCTaGTTTAACATCGTCCAATCA | + |
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Preference number: 4 (lower is better) Translates to: RETTEEQPRKTGGSVHRYCWAAF*FNIVQS Trigger: TGATTGGACGATGTTAAAGCAGAAAGCAGCCCAGCA...GTACCTGTGCACGCTTCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| CDS-3UTR GCA 90 bp | TGTATTTCTTCAGCTAGACAGGCCAACGGCAGATGTTCTTCTACCCAGGCATCCTGCTGGGCTGCTTTCTaGTTTAACATCGTCCAATCA | + |
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Preference number: 4 (lower is better) Translates to: CISSARQANGRCSSTQASCWAAF*FNIVQS Trigger: TGATTGGACGATGTTAAAGCAGAAAGCAGCCCAGCA...GGATGCCTGGGTAGAAGAACATCTGCCGTTGGCCTGTCTAGCTGAAGAAATACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166990.8 |
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| 3UTR CAA 72 bp | TCTGTGTGGACCTGCCAGTTCAGTCTGTGGTCAACATaGTTTAGGGACCGGCTGAAGGTTAGTCTAACAATA | + |
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Preference number: 4 (lower is better) Translates to: SVWTCQFSLWST*FRDRLKVSLTI Trigger: TATTGTTAGACTAACCTTCAGCCGGTCCCTAAACAATGTTGACCACAGACTGAACTGGCAGGTCCACACAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166990.8 |
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| CDS-3UTR GCA 90 bp | CCAGATGTATTTCTTCAGCTAGACAGGCCAACGGCAGATGTTCTTCTACCCAGGCACTCTCTTCCAGTGTaGTTTAGTCTTTTGTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: PDVFLQLDRPTADVLLPRHSLPV*FSLLFD Trigger: ATCAAACAAAAGACTAAAGCACACTGGAAGAGAGTG...CCTGGGTAGAAGAACATCTGCCGTTGGCCTGTCTAGCTGAAGAAATACATCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166990.8 |
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| CDS-3UTR GCA 90 bp | TTTCAGAACATGATAAGACCATGTACATGTAATAATGTGCACGACCACTGTGTCTGCTGGGCTGCTTTCTaGTTTAACATCGTCCAATCA | + |
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Preference number: 4 (lower is better) Translates to: FQNMIRPCTCNNVHDHCVCWAAF*FNIVQS Trigger: TGATTGGACGATGTTAAAGCAGAAAGCAGCCCAGCA...GACACAGTGGTCGTGCACATTATTACATGTACATGGTCTTATCATGTTCTGAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| 3UTR CAA 72 bp | GAAGATTATTTCAGCTTTACGGTAATAACACATCTCTaGGTGACAGAATGTGGCAATCATGGAGTTAATTAT | + |
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Preference number: 4 (lower is better) Translates to: EDYFSFTVITHL*VTECGNHGVNY Trigger: ATAATTAACTCCATGATTGCCACATTCTGTCACCAAGAGATGTGTTATTACCGTAAAGCTGAAATAATCTTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| CDS-3UTR CAA 90 bp | GACAGGCCAACGGCAGATGTTCTTCTACCCAGGCATCCTTTCTCCAAAGAGCTGTGCAGCCTTCAGTCCTaGCCACGGCAGACTGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: DRPTADVLLPRHPFSKELCSLQS*PRQTGS Trigger: AGAACCAGTCTGCCGTGGCAAGGACTGAAGGCTGCA...CAGCTCTTTGGAGAAAGGATGCCTGGGTAGAAGAACATCTGCCGTTGGCCTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166990.8 |
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| CDS-3UTR CAA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGATGCAGCCTTCAGTCCTaGCCACGGCAGACTGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SFSWIRETTEEQPRKTGGCSLQS*PRQTGS Trigger: AGAACCAGTCTGCCGTGGCAAGGACTGAAGGCTGCA...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| CDS-3UTR CAA 90 bp | TCCTTCTCTTGGATCAGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAGCCACTTCCTCGCCATaGGTGATGTTGATCGCTAGA | + |
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Preference number: 5 (lower is better) Translates to: SFSWIRETTEEQPRKTGGATSSP*VMLIAR Trigger: TCTAGCGATCAACATCACCAATGGCGAGGAAGTGGC...TCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCTGATCCAAGAGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| CDS-3UTR CAA 90 bp | AGAGAAACAACTGAAGAGCAACCAAGAAAGACTGGGGGAAGCGTGCACAGGTACATCTTCCGCACCAGTTaGTATTTTCCACCGACGATA | + |
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Preference number: 5 (lower is better) Translates to: RETTEEQPRKTGGSVHRYIFRTS*YFPPTI Trigger: TATCGTCGGTGGAAAATACAAACTGGTGCGGAAGAT...GTACCTGTGCACGCTTCCCCCAGTCTTTCTTGGTTGCTCTTCAGTTGTTTCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165123.8 |
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| CDS-3UTR CAA 90 bp | GCAGATGTTCTTCTACCCAGGCATCCTTTCTCCAAAGAGCTGTCCTTTGATAGTATCTTCCGCACCAGTTaGTATTTTCCACCGACGATA | + |
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Preference number: 5 (lower is better) Translates to: ADVLLPRHPFSKELSFDSIFRTS*YFPPTI Trigger: TATCGTCGGTGGAAAATACAAACTGGTGCGGAAGAT...ACTATCAAAGGACAGCTCTTTGGAGAAAGGATGCCTGGGTAGAAGAACATCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166990.8 |
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| CDS-3UTR CAA 90 bp | GAGAATTTGATTTTGGAAGCTATACTGAGCTTTGCAATTATCAAGTTGCTCTGCTGCAGCCTTCAGTCCTaGCCACGGCAGACTGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: ENLILEAILSFAIIKLLCCSLQS*PRQTGS Trigger: AGAACCAGTCTGCCGTGGCAAGGACTGAAGGCTGCA...GCAGAGCAACTTGATAATTGCAAAGCTCAGTATAGCTTCCAAAATCAAATTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| CDS-3UTR CAA 90 bp | GAGAATTTGATTTTGGAAGCTATACTGAGCTTTGCAATTATCAAGTTGCTCTGCGCCACTTCCTCGCCATaGGTGATGTTGATCGCTAGA | + |
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Preference number: 5 (lower is better) Translates to: ENLILEAILSFAIIKLLCATSSP*VMLIAR Trigger: TCTAGCGATCAACATCACCAATGGCGAGGAAGTGGC...GCAGAGCAACTTGATAATTGCAAAGCTCAGTATAGCTTCCAAAATCAAATTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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| CDS-3UTR CAA 90 bp | GAGAATTTGATTTTGGAAGCTATACTGAGCTTTGCAATTATCAAGTTGCTCTGCATCTTCCGCACCAGTTaGTATTTTCCACCGACGATA | + |
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Preference number: 5 (lower is better) Translates to: ENLILEAILSFAIIKLLCIFRTS*YFPPTI Trigger: TATCGTCGGTGGAAAATACAAACTGGTGCGGAAGAT...GCAGAGCAACTTGATAATTGCAAAGCTCAGTATAGCTTCCAAAATCAAATTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163205.8 |
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