Pregenerated sensors for CSN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001622Ensembl transcript IDs: ENSMUST00000001667.13, ENSMUST00000113267.8, ENSMUST00000113271.3
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACGAAGGAGTTTCAAGTTaGAATTTGGTTCCAGACCTT | + |
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Preference number: 2 (lower is better) Translates to: ACKLSSDLHNHPMACMYNEGVSS*NLVPDL Trigger: AAGGTCTGGAACCAAATTTCAACTTGAAACTCCTTC...GTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| 3UTR-3UTR TCA 90 bp | GCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACAATTGCATTTTCTCTTaGATGATGGCAGAGTTTCCC | + |
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Preference number: 2 (lower is better) Translates to: ASYPLTSTTIPWHACTTHNCIFS*MMAEFP Trigger: GGGAAACTCTGCCATCATTCAAGAGAAAATGCAATT...GTGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| 3UTR CAA 90 bp | TGGTGTAGTCTTAAGCCCACATTTGAATTTGAACAAGTTCTGACTTaGTACATTCTACCCACATTTGTACTTGAGTGTGAGCTCAAAGTT | + |
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Preference number: 2 (lower is better) Translates to: WCSLKPTFEFEQVLT*YILPTFVLECELKV Trigger: AACTTTGAGCTCACACTCAAGTACAAATGTGGGTAGAATGTACAAAGTCAGAACTTGTTCAAATTCAAATGTGGGCTTAAGACTACACCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| 3UTR TCA 72 bp | GTGGCAGAAGAGGATGGATGCCTGCAAGTTATCCTCTaGCCTCCACAACCATCCCATGGCATGCATGTACAA | + |
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Preference number: 3 (lower is better) Translates to: VAEEDGCLQVIL*PPQPSHGMHVQ Trigger: TTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCATCCTCTTCTGCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| 3UTR-3UTR CAA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGGGTTCCAGACCTTTATaGTCTTTTTCAATGTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: MDACKLSSDLHNHPMACMGSRPL*SFSMFP Trigger: AGGAAACATTGAAAAAGACAATAAAGGTCTGGAACC...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| 3UTR-3UTR CAA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGAAATTGCATTTTCTCTaGAATGATGGCAGAGTTTCC | + |
|
Preference number: 3 (lower is better) Translates to: MDACKLSSDLHNHPMACMKLHFL*NDGRVS Trigger: GGAAACTCTGCCATCATTCAAGAGAAAATGCAATTT...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| 3UTR-3UTR CAA 90 bp | CAGAATGACAATCCAGAGAGAATGTTAACCAGTCTCAGGTTACTGCTGAGAAGGTCAGCAGTCATACTTTaGTACCTCAATTGTTTTACC | + |
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Preference number: 3 (lower is better) Translates to: QNDNPERMLTSLRLLLRRSAVIL*YLNCFT Trigger: GGTAAAACAATTGAGGTACAAAAGTATGACTGCTGA...CCTTCTCAGCAGTAACCTGAGACTGGTTAACATTCTCTCTGGATTGTCATTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| 3UTR TCA 72 bp | TTTGTACTTGAGTGTGAGCTCAAAGTTACATCAGAATaGCAATCCAGAGAGAATGTTAACCAGTCTCAGGTT | + |
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Preference number: 3 (lower is better) Translates to: FVLECELKVTSE*QSRENVNQSQV Trigger: AACCTGAGACTGGTTAACATTCTCTCTGGATTGTCATTCTGATGTAACTTTGAGCTCACACTCAAGTACAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| 3UTR TCA 72 bp | GTAGTCTTAAGCCCACATTTGAATTTGAACAAGTTCTaGCTTTGTACATTCTACCCACATTTGTACTTGAGT | + |
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Preference number: 3 (lower is better) Translates to: VVLSPHLNLNKF*LCTFYPHLYLS Trigger: ACTCAAGTACAAATGTGGGTAGAATGTACAAAGTCAGAACTTGTTCAAATTCAAATGTGGGCTTAAGACTAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| 3UTR TCA 72 bp | GACTCTAGATTCATGAGATATGAGCAAACATACGATTaGACACTGATTGCTTCATTAAAAGCATGGTCATAC | + |
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Preference number: 3 (lower is better) Translates to: DSRFMRYEQTYD*TLIASLKAWSY Trigger: GTATGACCATGCTTTTAATGAAGCAATCAGTGTTCAATCGTATGTTTGCTCATATCTCATGAATCTAGAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CCA 90 bp | CCTTGCCTGTCGCAGTCTCTCAGATCACAGGCCTTCCTGTGGCATCTTAGACCATGGGTAGTACATGTATaGGCTAGCAGTAGCAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: PCLSQSLRSQAFLWHLRPWVVHV*ASSSRQ Trigger: TTGCCTGCTACTGCTAGCCCATACATGTACTACCCA...TGGTCTAAGATGCCACAGGAAGGCCTGTGATCTGAGAGACTGCGACAGGCAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| 3UTR CAA 72 bp | CAGGTTACTGCTGAGAAGGTAGAAGATTCCTCTTCCTaGCCTGTCGCAGTCTCTCAGATCACAGGCCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QVTAEKVEDSSS*PVAVSQITGLP Trigger: AGGAAGGCCTGTGATCTGAGAGACTGCGACAGGCAAGGAAGAGGAATCTTCTACCTTCTCAGCAGTAACCTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CCA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTGGGTAGTACATGTATaGGCTAGCAGTAGCAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: MDACKLSSDLHNHPMACMWVVHV*ASSSRQ Trigger: TTGCCTGCTACTGCTAGCCCATACATGTACTACCCA...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR GCA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTGGGTTTTGTATCTCTaGAGCCAAAAAGGGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: MDACKLSSDLHNHPMACMWVLYL*SQKGQS Trigger: ACTCTGCCCTTTTTGGCTGCAGAGATACAAAACCCA...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CCA 90 bp | AAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACACGCATTGATTGCCATTTaGAGATTGGGGCTGGAGACC | + |
|
Preference number: 4 (lower is better) Translates to: KLSSDLHNHPMACMYNTHALIAI*RLGLET Trigger: GGTCTCCAGCCCCAATCTCCAAATGGCAATCAATGC...GTGTGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CCA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGCATGGCAAGAAAGGATaGGTTTGGAATGGCATAAGG | + |
|
Preference number: 4 (lower is better) Translates to: MDACKLSSDLHNHPMACMHGKKG*VWNGIR Trigger: CCTTATGCCATTCCAAACCCATCCTTTCTTGCCATG...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CCA 90 bp | TGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACTCCATGGTAGGAACTaGTGTGGACACAATGGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: CKLSSDLHNHPMACMYNTLHGRN*CGHNGS Trigger: ACTCCCATTGTGTCCACACCAGTTCCTACCATGGAG...TGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR TCA 90 bp | GCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACATGGCGGTGTTATCCTaGTTTTCATTTGTAGGCATG | + |
|
Preference number: 4 (lower is better) Translates to: ACKLSSDLHNHPMACMYNMAVLS*FSFVGM Trigger: CATGCCTACAAATGAAAATCAGGATAACACCGCCAT...GTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CCA 90 bp | CTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTGCATTGATTGCCATTTaGAGATTGGGGCTGGAGACC | + |
|
Preference number: 4 (lower is better) Translates to: LHVDLAGLELKIFLPQSSALIAI*RLGLET Trigger: GGTCTCCAGCCCCAATCTCCAAATGGCAATCAATGC...AGAGGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR CCA 90 bp | CTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTCTCCATGGTAGGAACTaGTGTGGACACAATGGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LHVDLAGLELKIFLPQSSLHGRN*CGHNGS Trigger: ACTCCCATTGTGTCCACACCAGTTCCTACCATGGAG...AGAGGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR TCA 90 bp | AAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACACGGGGAAATTTGGCATTaGTTGCCATTTGGAGATTGG | + |
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Preference number: 4 (lower is better) Translates to: KLSSDLHNHPMACMYNTHGEIWH*LPFGDW Trigger: CCAATCTCCAAATGGCAATCAATGCCAAATTTCCCC...GTGTGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CCA 90 bp | CTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTTGGGTAGTACATGTATaGGCTAGCAGTAGCAGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LHVDLAGLELKIFLPQSSWVVHV*ASSSRQ Trigger: TTGCCTGCTACTGCTAGCCCATACATGTACTACCCA...AGAGGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR CCA 90 bp | GCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACAAGAAAGGATGGGTTTaGAATGGCATAAGGTACTCC | + |
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Preference number: 4 (lower is better) Translates to: ASYPLTSTTIPWHACTTHKKGWV*NGIRYS Trigger: GGAGTACCTTATGCCATTCCAAACCCATCCTTTCTT...GTGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CCA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTGGAAGCTTCAGGATTaGCCACAGTATTTACTATTG | + |
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Preference number: 4 (lower is better) Translates to: MDACKLSSDLHNHPMACMWKLQD*PQYLLL Trigger: CAATAGTAAATACTGTGGCCAATCCTGAAGCTTCCA...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR TCA 90 bp | CTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTGGGGAAATTTGGCATTaGTTGCCATTTGGAGATTGG | + |
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Preference number: 4 (lower is better) Translates to: LHVDLAGLELKIFLPQSSGEIWH*LPFGDW Trigger: CCAATCTCCAAATGGCAATCAATGCCAAATTTCCCC...AGAGGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR GCA 90 bp | AGTCTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTGGGTTTTGTATCTCTaGAGCCAAAAAGGGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: SLHVDLAGLELKIFLPQSWVLYL*SQKGQS Trigger: ACTCTGCCCTTTTTGGCTGCAGAGATACAAAACCCA...GGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR GCA 90 bp | AAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACACGTGTACAGGACTCTTTaGTCATCGTACACTATGTCA | + |
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Preference number: 4 (lower is better) Translates to: KLSSDLHNHPMACMYNTHVYRTL*SSYTMS Trigger: TGACATAGTGTACGATGAGCAAAGAGTCCTGTACAC...GTGTGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CCA 90 bp | CCTAGTCTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAACATGGCAAGAAAGGATaGGTTTGGAATGGCATAAGG | + |
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Preference number: 4 (lower is better) Translates to: PSLHVDLAGLELKIFLPQHGKKG*VWNGIR Trigger: CCTTATGCCATTCCAAACCCATCCTTTCTTGCCATG...TTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAGACTAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR TCA 90 bp | CCTAGTCTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAAATGGCGGTGTTATCCTaGTTTTCATTTGTAGGCATG | + |
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Preference number: 4 (lower is better) Translates to: PSLHVDLAGLELKIFLPQMAVLS*FSFVGM Trigger: CATGCCTACAAATGAAAATCAGGATAACACCGCCAT...TTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAGACTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR GCA 90 bp | CCTAGTCTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAAGTGTACAGGACTCTTTaGTCATCGTACACTATGTCA | + |
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Preference number: 4 (lower is better) Translates to: PSLHVDLAGLELKIFLPQVYRTL*SSYTMS Trigger: TGACATAGTGTACGATGAGCAAAGAGTCCTGTACAC...TTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAGACTAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR CCA 90 bp | CTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTAAGAAAGGATGGGTTTaGAATGGCATAAGGTACTCC | + |
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Preference number: 4 (lower is better) Translates to: LHVDLAGLELKIFLPQSSKKGWV*NGIRYS Trigger: GGAGTACCTTATGCCATTCCAAACCCATCCTTTCTT...AGAGGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR GCA 90 bp | CAACTCAATTTCAAGATATGTGCAGATGGCCTTCTAATGAAGCCACAGGTGGTTTGGGTTTTGTATCTCTaGAGCCAAAAAGGGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: QLNFKICADGLLMKPQVVWVLYL*SQKGQS Trigger: ACTCTGCCCTTTTTGGCTGCAGAGATACAAAACCCA...AACCACCTGTGGCTTCATTAGAAGGCCATCTGCACATATCTTGAAATTGAGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CCA 90 bp | CAGAATGACAATCCAGAGAGAATGTTAACCAGTCTCAGGTTACTGCTGAGAAGGAAGAAAGGATGGGTTTaGAATGGCATAAGGTACTCC | + |
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Preference number: 4 (lower is better) Translates to: QNDNPERMLTSLRLLLRRKKGWV*NGIRYS Trigger: GGAGTACCTTATGCCATTCCAAACCCATCCTTTCTT...CCTTCTCAGCAGTAACCTGAGACTGGTTAACATTCTCTCTGGATTGTCATTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CCA 90 bp | CTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTTGGAAGCTTCAGGATTaGCCACAGTATTTACTATTG | + |
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Preference number: 4 (lower is better) Translates to: LHVDLAGLELKIFLPQSSWKLQD*PQYLLL Trigger: CAATAGTAAATACTGTGGCCAATCCTGAAGCTTCCA...AGAGGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR TCA 90 bp | AACGGAACTCAGCAGTCATACTTTTGTACCTCAATTGTTTTACCCTTTGTGAGAGGGGAAATTTGGCATTaGTTGCCATTTGGAGATTGG | + |
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Preference number: 4 (lower is better) Translates to: NGTQQSYFCTSIVLPFVRGEIWH*LPFGDW Trigger: CCAATCTCCAAATGGCAATCAATGCCAAATTTCCCC...TCTCACAAAGGGTAAAACAATTGAGGTACAAAAGTATGACTGCTGAGTTCCGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CCA 90 bp | TTGAGTGTGAGCTCAAAGTTACATCAGAATGACAATCCAGAGAGAATGTTAACCCATGGCAAGAAAGGATaGGTTTGGAATGGCATAAGG | + |
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Preference number: 4 (lower is better) Translates to: LSVSSKLHQNDNPERMLTHGKKG*VWNGIR Trigger: CCTTATGCCATTCCAAACCCATCCTTTCTTGCCATG...GGTTAACATTCTCTCTGGATTGTCATTCTGATGTAACTTTGAGCTCACACTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CCA 90 bp | TGTTATAACGGAACTCAGCAGTCATACTTTTGTACCTCAATTGTTTTACCCTTTCTCCATGGTAGGAACTaGTGTGGACACAATGGGAGT | + |
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Preference number: 4 (lower is better) Translates to: CYNGTQQSYFCTSIVLPFLHGRN*CGHNGS Trigger: ACTCCCATTGTGTCCACACCAGTTCCTACCATGGAG...AAAGGGTAAAACAATTGAGGTACAAAAGTATGACTGCTGAGTTCCGTTATAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| 3UTR CAA 72 bp | CTTAAGCCCACATTTGAATTTGAACAAGTTCTGACTTaGTACATTCTACCCACATTTGTACTTGAGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: LKPTFEFEQVLT*YILPTFVLECE Trigger: CTCACACTCAAGTACAAATGTGGGTAGAATGTACAAAGTCAGAACTTGTTCAAATTCAAATGTGGGCTTAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CCA 90 bp | TGTTATAACGGAACTCAGCAGTCATACTTTTGTACCTCAATTGTTTTACCCTTTTGGAAGCTTCAGGATTaGCCACAGTATTTACTATTG | + |
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Preference number: 4 (lower is better) Translates to: CYNGTQQSYFCTSIVLPFWKLQD*PQYLLL Trigger: CAATAGTAAATACTGTGGCCAATCCTGAAGCTTCCA...AAAGGGTAAAACAATTGAGGTACAAAAGTATGACTGCTGAGTTCCGTTATAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CAA 90 bp | GCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACGGCATTGATTGCCATTaGGAGATTGGGGCTGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: ASYPLTSTTIPWHACTTHGIDCH*EIGAGD Trigger: GTCTCCAGCCCCAATCTCCAAATGGCAATCAATGCC...GTGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CAA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGCAGACTGGGGGAAATTaGGCATTGATTGCCATTTGG | + |
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Preference number: 5 (lower is better) Translates to: MDACKLSSDLHNHPMACMQTGGN*ALIAIW Trigger: CCAAATGGCAATCAATGCCAAATTTCCCCCAGTCTG...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CAA 90 bp | ATGGATGCCTGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTCTCACCACGGCAGTTaGAATCTGGGTTTTGTATCT | + |
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Preference number: 5 (lower is better) Translates to: MDACKLSSDLHNHPMACMSHHGS*NLGFVS Trigger: AGATACAAAACCCAGATTCAAACTGCCGTGGTGAGA...CATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCAGGCATCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS-3UTR CAA 90 bp | AGTCTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCGGCATTGATTGCCATTaGGAGATTGGGGCTGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: SLHVDLAGLELKIFLPQSGIDCH*EIGAGD Trigger: GTCTCCAGCCCCAATCTCCAAATGGCAATCAATGCC...GGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS TCA 90 bp | GATAGACACTGTGGAAGCTTCAGGATTGGCCACAGTATTTACTATTaGCTCCATGGTAGGAACTGGTGTGGACACAATGGGAGTAATGGG | + |
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Preference number: 5 (lower is better) Translates to: DRHCGSFRIGHSIYY*LHGRNWCGHNGSNG Trigger: CCCATTACTCCCATTGTGTCCACACCAGTTCCTACCATGGAGTCAATAGTAAATACTGTGGCCAATCCTGAAGCTTCCACAGTGTCTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS-3UTR CAA 90 bp | AGTCTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCCAGACTGGGGGAAATTaGGCATTGATTGCCATTTGG | + |
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Preference number: 5 (lower is better) Translates to: SLHVDLAGLELKIFLPQSQTGGN*ALIAIW Trigger: CCAAATGGCAATCAATGCCAAATTTCCCCCAGTCTG...GGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAGACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR CAA 90 bp | TGCAAGTTATCCTCTGACCTCCACAACCATCCCATGGCATGCATGTACAACACACAAGAAAGGATGGGTTaGGAATGGCATAAGGTACTC | + |
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Preference number: 5 (lower is better) Translates to: CKLSSDLHNHPMACMYNTQERMG*EWHKVL Trigger: GAGTACCTTATGCCATTCCAAACCCATCCTTTCTTG...TGTGTTGTACATGCATGCCATGGGATGGTTGTGGAGGTCAGAGGATAACTTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001667.13 |
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| CDS TCA 90 bp | ACAATGGGAGTAATGGGGTCGATGGTTGGAATGGCGGTGTTATCCTaGTTTTCATTTGTAGGCATGGCAAGAAAGGATGGGTTTGGAATG | + |
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Preference number: 5 (lower is better) Translates to: TMGVMGSMVGMAVLS*FSFVGMARKDGFGM Trigger: CATTCCAAACCCATCCTTTCTTGCCATGCCTACAAATGAAAATCAGGATAACACCGCCATTCCAACCATCGACCCCATTACTCCCATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS-3UTR CAA 90 bp | AGTCTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTCACCACGGCAGTTaGAATCTGGGTTTTGTATCT | + |
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Preference number: 5 (lower is better) Translates to: SLHVDLAGLELKIFLPQSSHHGS*NLGFVS Trigger: AGATACAAAACCCAGATTCAAACTGCCGTGGTGAGA...GGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS-3UTR CAA 90 bp | CAGAATGACAATCCAGAGAGAATGTTAACCAGTCTCAGGTTACTGCTGAGAAGGCAGACTGGGGGAAATTaGGCATTGATTGCCATTTGG | + |
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Preference number: 5 (lower is better) Translates to: QNDNPERMLTSLRLLLRRQTGGN*ALIAIW Trigger: CCAAATGGCAATCAATGCCAAATTTCCCCCAGTCTG...CCTTCTCAGCAGTAACCTGAGACTGGTTAACATTCTCTCTGGATTGTCATTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CAA 90 bp | CTCCATGTAGATTTGGCTGGCCTTGAACTTAAGATCTTCCTGCCTCAATCCTCTCAAGAAAGGATGGGTTaGGAATGGCATAAGGTACTC | + |
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Preference number: 5 (lower is better) Translates to: LHVDLAGLELKIFLPQSSQERMG*EWHKVL Trigger: GAGTACCTTATGCCATTCCAAACCCATCCTTTCTTG...AGAGGATTGAGGCAGGAAGATCTTAAGTTCAAGGCCAGCCAAATCTACATGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113267.8 |
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| CDS CCA 90 bp | GTTATCCTGATTTTCATTTGTAGGCATGGCAAGAAAGGATGGGTTTaGAATGGCATAAGGTACTCCAGCAGACTGGGGGAAATTTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: VILIFICRHGKKGWV*NGIRYSSRLGEIWH Trigger: ATGCCAAATTTCCCCCAGTCTGCTGGAGTACCTTATGCCATTCCAAACCCATCCTTTCTTGCCATGCCTACAAATGAAAATCAGGATAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS-3UTR CAA 90 bp | CAACTCAATTTCAAGATATGTGCAGATGGCCTTCTAATGAAGCCACAGGTGGTTCAAGAAAGGATGGGTTaGGAATGGCATAAGGTACTC | + |
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Preference number: 5 (lower is better) Translates to: QLNFKICADGLLMKPQVVQERMG*EWHKVL Trigger: GAGTACCTTATGCCATTCCAAACCCATCCTTTCTTG...AACCACCTGTGGCTTCATTAGAAGGCCATCTGCACATATCTTGAAATTGAGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS-3UTR CAA 90 bp | TGTTATAACGGAACTCAGCAGTCATACTTTTGTACCTCAATTGTTTTACCCTTTTCTCACCACGGCAGTTaGAATCTGGGTTTTGTATCT | + |
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Preference number: 5 (lower is better) Translates to: CYNGTQQSYFCTSIVLPFSHHGS*NLGFVS Trigger: AGATACAAAACCCAGATTCAAACTGCCGTGGTGAGA...AAAGGGTAAAACAATTGAGGTACAAAAGTATGACTGCTGAGTTCCGTTATAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000113271.3 |
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| CDS GCA 72 bp | TTCAGGACGGAGCGGACTGGTGTGTACAGGACTCTTTaGTCATCGTACACTATGTCATTCTTCTCACCACGG | + |
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Preference number: 6 (lower is better) Translates to: FRTERTGVYRTL*SSYTMSFFSPR Trigger: CCGTGGTGAGAAGAATGACATAGTGTACGATGAGCAAAGAGTCCTGTACACACCAGTCCGCTCCGTCCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS CAA 72 bp | CCAGCAGACTGGGGGAAATTTGGCATTGATTGCCATTaGGAGATTGGGGCTGGAGACCTAAGCAGAAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: PADWGKFGIDCH*EIGAGDLSRSS Trigger: ACTACTTCTGCTTAGGTCTCCAGCCCCAATCTCCAAATGGCAATCAATGCCAAATTTCCCCCAGTCTGCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS CAA 72 bp | GAATGGCATAAGGTACTCCAGCAGACTGGGGGAAATTaGGCATTGATTGCCATTTGGAGATTGGGGCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: EWHKVLQQTGGN*ALIAIWRLGLE Trigger: CTCCAGCCCCAATCTCCAAATGGCAATCAATGCCAAATTTCCCCCAGTCTGCTGGAGTACCTTATGCCATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS CAA 72 bp | GTTGAGGACACTGGGACTGTAGTAGTCTCAGGGGTATaGATAGACACTGTGGAAGCTTCAGGATTGGCCACA | + |
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Preference number: 6 (lower is better) Translates to: VEDTGTVVVSGV*IDTVEASGLAT Trigger: TGTGGCCAATCCTGAAGCTTCCACAGTGTCTATCAATACCCCTGAGACTACTACAGTCCCAGTGTCCTCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS TCA 72 bp | ATAAGGTACTCCAGCAGACTGGGGGAAATTTGGCATTaGTTGCCATTTGGAGATTGGGGCTGGAGACCTAAG | + |
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Preference number: 6 (lower is better) Translates to: IRYSSRLGEIWH*LPFGDWGWRPK Trigger: CTTAGGTCTCCAGCCCCAATCTCCAAATGGCAATCAATGCCAAATTTCCCCCAGTCTGCTGGAGTACCTTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS CAA 90 bp | TATGCTGCAGTTGAGGACACTGGGACTGTAGTAGTCTCAGGGGTATaGATAGACACTGTGGAAGCTTCAGGATTGGCCACAGTATTTACT | + |
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Preference number: 6 (lower is better) Translates to: YAAVEDTGTVVVSGV*IDTVEASGLATVFT Trigger: AGTAAATACTGTGGCCAATCCTGAAGCTTCCACAGTGTCTATCAATACCCCTGAGACTACTACAGTCCCAGTGTCCTCAACTGCAGCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS TCA 72 bp | TGTGGAAGCTTCAGGATTGGCCACAGTATTTACTATTaGCTCCATGGTAGGAACTGGTGTGGACACAATGGG | + |
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Preference number: 6 (lower is better) Translates to: CGSFRIGHSIYY*LHGRNWCGHNG Trigger: CCCATTGTGTCCACACCAGTTCCTACCATGGAGTCAATAGTAAATACTGTGGCCAATCCTGAAGCTTCCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS CAA 90 bp | CTCTTTGCTCATCGTACACTATGTCATTCTTCTCACCACGGCAGTTaGAATCTGGGTTTTGTATCTCTGCAGCCAAAAAGGGCAGAGTTA | + |
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Preference number: 6 (lower is better) Translates to: LFAHRTLCHSSHHGS*NLGFVSLQPKRAEL Trigger: TAACTCTGCCCTTTTTGGCTGCAGAGATACAAAACCCAGATTCAAACTGCCGTGGTGAGAAGAATGACATAGTGTACGATGAGCAAAGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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| CDS CAA 72 bp | CATCGTACACTATGTCATTCTTCTCACCACGGCAGTTaGAATCTGGGTTTTGTATCTCTGCAGCCAAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: HRTLCHSSHHGS*NLGFVSLQPKR Trigger: CCTTTTTGGCTGCAGAGATACAAAACCCAGATTCAAACTGCCGTGGTGAGAAGAATGACATAGTGTACGATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000001667.13 ENSMUST00000113267.8 ENSMUST00000113271.3 |
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