Pregenerated sensors for CSN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063157Ensembl transcript IDs: ENSMUST00000082370.10, ENSMUST00000196163.2, ENSMUST00000196869.5, ENSMUST00000197422.5, ENSMUST00000198057.5, ENSMUST00000199624.5
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCAAGAGATGGTTTGAGCCTGAGCATATGGAAAGGCCTGGGGCTGTaGCTGGATGCTGGAGTGAACTTTAGCCTGGAGCACATCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: ARDGLSLSIWKGLGL*LDAGVNFSLEHILC Trigger: GCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCATCCAGTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACCATCTCTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS TCA 90 bp | AGTTCAGGAGAAATGACAGGCCCAAGAGATGGCACCACAGGGGGTTaGGCAATAGGCTGGATGTTTTGTGGGACGGGATTGCAAGAGATG | + |
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Preference number: 5 (lower is better) Translates to: SSGEMTGPRDGTTGG*AIGWMFCGTGLQEM Trigger: CATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTGAACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS CCA 90 bp | TTTAAGGAAGGATTCCAGTTCAGGAGAAATGACAGGCCCAAGAGATaGCACCACAGGGGGTTGAGCAATAGGCTGGATGTTTTGTGGGAC | + |
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Preference number: 5 (lower is better) Translates to: FKEGFQFRRNDRPKR*HHRGLSNRLDVLWD Trigger: GTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTGAACTGGAATCCTTCCTTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS GCA 90 bp | ATGAGGCGGAGCACAGTTTCAGAGTTAAGGAGGGGCATCTGTTTGTaGTTGGGAAGGATGGTGGCTTTAGCTTTAAGGAAGGATTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: MRRSTVSELRRGICL*LGRMVALALRKDSS Trigger: ACTGGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS GCA 90 bp | GGAAATACTATCAGTCTCAGAGGATACAGTAAATGTAGTCTCTCTTaGAAGAGCAAGGGCCACAAGGCAGGCGAGGATGAAGACCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: GNTISLRGYSKCSLS*KSKGHKAGEDEDLH Trigger: ATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTACATTTACTGTATCCTCTGAGACTGATAGTATTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000082370.10 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS GCA 90 bp | GATATGTTCAACAGATTCCTCACTGGAAATACTATCAGTCTCTCTTaGAAGAGCAAGGGCCACAAGGCAGGCGAGGATGAAGACCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: DMFNRFLTGNTISLS*KSKGHKAGEDEDLH Trigger: ATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTGATAGTATTTCCAGTGAGGAATCTGTTGAACATATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196163.2 |
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| CDS GCA 90 bp | CACCTTCTGAAGTTTCTCATTGATATGTTCAACAGATTCCTCTCTTaGAAGAGCAAGGGCCACAAGGCAGGCGAGGATGAAGACCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: HLLKFLIDMFNRFLS*KSKGHKAGEDEDLH Trigger: ATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGGAATCTGTTGAACATATCAATGAGAAACTTCAGAAGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196869.5 |
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| CDS TCA 72 bp | TATGGAAAGGCCTGGGGCTGTGACTGGATGCTGGAGTaGACTTTAGCCTGGAGCACATCCTCTGCCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: YGKAWGCDWMLE*TLAWSTSSACS Trigger: GCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCATCCAGTCACAGCCCCAGGCCTTTCCATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS TCA 72 bp | GGTTTGAGCCTGAGCATATGGAAAGGCCTGGGGCTGTaGCTGGATGCTGGAGTGAACTTTAGCCTGGAGCAC | + |
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Preference number: 6 (lower is better) Translates to: GLSLSIWKGLGL*LDAGVNFSLEH Trigger: GTGCTCCAGGCTAAAGTTCACTCCAGCATCCAGTCACAGCCCCAGGCCTTTCCATATGCTCAGGCTCAAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS CCA 72 bp | CACCACAGGGGGTTGAGCAATAGGCTGGATGTTTTGTaGGACGGGATTGCAAGAGATGGTTTGAGCCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: HHRGLSNRLDVL*DGIARDGLSLS Trigger: GCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTGCTCAACCCCCTGTGGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS GCA 72 bp | GATGCTGGAGTGAACTTTAGCCTGGAGCACATCCTCTaGCTGCAGCTGTCCCATGAGATTCACCTTCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: DAGVNFSLEHIL*LQLSHEIHLLK Trigger: CTTCAGAAGGTGAATCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS CCA 72 bp | GGATTCCAGTTCAGGAGAAATGACAGGCCCAAGAGATaGCACCACAGGGGGTTGAGCAATAGGCTGGATGTT | + |
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Preference number: 6 (lower is better) Translates to: GFQFRRNDRPKR*HHRGLSNRLDV Trigger: AACATCCAGCCTATTGCTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTGAACTGGAATCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS CAA 90 bp | AGACTGAGGAAGGTGCAGATTAGCAAGACTGGCAAGGCTGGGGATTaGAGAGTTTATGAGGCGGAGCACAGTTTCAGAGTTAAGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: RLRKVQISKTGKAGD*RVYEAEHSFRVKEG Trigger: CCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAACTCTCAAATCCCCAGCCTTGCCAGTCTTGCTAATCTGCACCTTCCTCAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS CAA 72 bp | CGGAGCACAGTTTCAGAGTTAAGGAGGGGCATCTGTTaGTGCTTGGGAAGGATGGTGGCTTTAGCTTTAAGG | + |
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Preference number: 6 (lower is better) Translates to: RSTVSELRRGIC*CLGRMVALALR Trigger: CCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS CAA 90 bp | AGGCGGAGCACAGTTTCAGAGTTAAGGAGGGGCATCTGTTTGTGCTaGGGAAGGATGGTGGCTTTAGCTTTAAGGAAGGATTCCAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: RRSTVSELRRGICLC*GRMVALALRKDSSS Trigger: TGAACTGGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS GCA 72 bp | AACAGATTCCTCACTGGAAATACTATCAGTCTCTCTTaGAAGAGCAAGGGCCACAAGGCAGGCGAGGATGAA | + |
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Preference number: 6 (lower is better) Translates to: NRFLTGNTISLS*KSKGHKAGEDE Trigger: TTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTGATAGTATTTCCAGTGAGGAATCTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196163.2 |
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| CDS CAA 90 bp | TTTATGAGGCGGAGCACAGTTTCAGAGTTAAGGAGGGGCATCTGTTaGTGCTTGGGAAGGATGGTGGCTTTAGCTTTAAGGAAGGATTCC | + |
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Preference number: 6 (lower is better) Translates to: FMRRSTVSELRRGIC*CLGRMVALALRKDS Trigger: GGAATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS GCA 72 bp | AGCACAGTTTCAGAGTTAAGGAGGGGCATCTGTTTGTaGTTGGGAAGGATGGTGGCTTTAGCTTTAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: STVSELRRGICL*LGRMVALALRK Trigger: CTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS CCA 72 bp | GTGGGGTTAAGAAGTTCTAGGTACTGCAGAAGGTCTTaGACAGACATATCTTGTGGAAGGAAGGGTGCTACT | + |
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Preference number: 6 (lower is better) Translates to: VGLRSSRYCRRS*TDISCGRKGAT Trigger: AGTAGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCTGCAGTACCTAGAACTTCTTAACCCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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| CDS GCA 72 bp | AAGTTTCTCATTGATATGTTCAACAGATTCCTCTCTTaGAAGAGCAAGGGCCACAAGGCAGGCGAGGATGAA | + |
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Preference number: 6 (lower is better) Translates to: KFLIDMFNRFLS*KSKGHKAGEDE Trigger: TTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGGAATCTGTTGAACATATCAATGAGAAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196869.5 |
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| CDS CAA 72 bp | ACAGTTTCAGAGTTAAGGAGGGGCATCTGTTTGTGCTaGGGAAGGATGGTGGCTTTAGCTTTAAGGAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: TVSELRRGICLC*GRMVALALRKD Trigger: ATCCTTCCTTAAAGCTAAAGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000082370.10 ENSMUST00000196163.2 ENSMUST00000196869.5 ENSMUST00000197422.5 ENSMUST00000198057.5 ENSMUST00000199624.5 |
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