Pregenerated sensors for CSN1S2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061937Ensembl transcript IDs: ENSMUST00000076379.8, ENSMUST00000196585.2, ENSMUST00000196749.5, ENSMUST00000200322.5
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGGTTAATAGTAGGAGGTaGTGGGGAAACCACGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: HSLFFWLNIVVFSRSILGVNSRR*WGNHEE Trigger: TTCTTCGTGGTTTCCCCATCACCTCCTACTATTAAC...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| 3UTR-3UTR TCA 90 bp | GAAGTAGTACTGAAAAGACTTCAATTAAACAATGCAGTTAATACGGCTCCACAGGTTAATAGTAGGAGGTaGTGGGGAAACCACGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: EVVLKRLQLNNAVNTAPQVNSRR*WGNHEE Trigger: TTCTTCGTGGTTTCCCCATCACCTCCTACTATTAAC...CTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAGTCTTTTCAGTACTACTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| 3UTR-3UTR TCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACAGTTAATAGTAGGAGGTaGTGGGGAAACCACGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: HSPKLEHTTQSKKITNNTVNSRR*WGNHEE Trigger: TTCTTCGTGGTTTCCCCATCACCTCCTACTATTAAC...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| 3UTR TCA 72 bp | TCAAGAAGCATCTTAGGGAATGTTAATAGTAGGAGGTaGTGGGGAAACCACGAAGAAACCAATTTTCTACTC | + |
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Preference number: 3 (lower is better) Translates to: SRSILGNVNSRR*WGNHEETNFLL Trigger: GAGTAGAAAATTGGTTTCTTCGTGGTTTCCCCATCACCTCCTACTATTAACATTCCCTAAGATGCTTCTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| 3UTR-3UTR CAA 90 bp | GAAGTAGTACTGAAAAGACTTCAATTAAACAATGCAGTTAATACGGCTCCACAGTCTTCTGGCTCAATATaGTTGTCTTTTCAAGAAGCA | + |
|
Preference number: 3 (lower is better) Translates to: EVVLKRLQLNNAVNTAPQSSGSI*LSFQEA Trigger: TGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGA...CTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAGTCTTTTCAGTACTACTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CCA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGTTAGGCTGGGGCCACTaGTTCACACTGCTCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HSLFFWLNIVVFSRSILGLGWGH*FTLLCC Trigger: GCAGCAGAGCAGTGTGAACCAGTGGCCCCAGCCTAA...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR TCA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGCTCTGCTGCTGCTGGTaGAGAGGTGTGCAACATTGG | + |
|
Preference number: 4 (lower is better) Translates to: HSLFFWLNIVVFSRSILGLCCCW*RGVQHW Trigger: CCAATGTTGCACACCTCTTCACCAGCAGCAGCAGAG...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR GCA 90 bp | CTTCAATTAAACAATGCAGTTAATACGGCTCCACAGTCCAAAGTTGGAACACACGCCACTGGTTCACACTaGTCTGCTGCTGCTGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LQLNNAVNTAPQSKVGTHATGSH*SAAAGE Trigger: TTCACCAGCAGCAGCAGAGCAGTGTGAACCAGTGGC...GTGTGTTCCAACTTTGGACTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR GCA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGGCCACTGGTTCACACTaGTCTGCTGCTGCTGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: HSLFFWLNIVVFSRSILGATGSH*SAAAGE Trigger: TTCACCAGCAGCAGCAGAGCAGTGTGAACCAGTGGC...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGTGGATGGCATTAGGCTaGGGCCACTGGTTCACACTG | + |
|
Preference number: 4 (lower is better) Translates to: HSLFFWLNIVVFSRSILGWMALG*GHWFTL Trigger: CAGTGTGAACCAGTGGCCCCAGCCTAATGCCATCCA...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | TCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATTTAGGCTGGGGCCACTaGTTCACACTGCTCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SLFFWLNIVVFSRSILGNLGWGH*FTLLCC Trigger: GCAGCAGAGCAGTGTGAACCAGTGGCCCCAGCCTAA...ATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | AATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATTTAGGCTGGGGCCACTaGTTCACACTGCTCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NIPLSLLLAQYCCLFKKHLGWGH*FTLLCC Trigger: GCAGCAGAGCAGTGTGAACCAGTGGCCCCAGCCTAA...ATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | ATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTGGATGGCATTAGGCTaGGGCCACTGGTTCACACTG | + |
|
Preference number: 4 (lower is better) Translates to: ISHSLFFWLNIVVFSRSIWMALG*GHWFTL Trigger: CAGTGTGAACCAGTGGCCCCAGCCTAATGCCATCCA...GATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR TCA 90 bp | AATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTCTGCTGCTGCTGGTaGAGAGGTGTGCAACATTGG | + |
|
Preference number: 4 (lower is better) Translates to: NIPLSLLLAQYCCLFKKHLCCCW*RGVQHW Trigger: CCAATGTTGCACACCTCTTCACCAGCAGCAGCAGAG...ATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR TCA 90 bp | CTTGGCGAGAGATATTTTGGTTCTTATCTCAGAAGTAGTACTGAAAAGACTTCACTCTGCTGCTGCTGGTaGAGAGGTGTGCAACATTGG | + |
|
Preference number: 4 (lower is better) Translates to: LGERYFGSYLRSSTEKTSLCCCW*RGVQHW Trigger: CCAATGTTGCACACCTCTTCACCAGCAGCAGCAGAG...TGAAGTCTTTTCAGTACTACTTCTGAGATAAGAACCAAAATATCTCTCGCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACATTAGGCTGGGGCCACTaGTTCACACTGCTCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: HSPKLEHTTQSKKITNNTLGWGH*FTLLCC Trigger: GCAGCAGAGCAGTGTGAACCAGTGGCCCCAGCCTAA...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | CTTGGCGAGAGATATTTTGGTTCTTATCTCAGAAGTAGTACTGAAAAGACTTCATGGATGGCATTAGGCTaGGGCCACTGGTTCACACTG | + |
|
Preference number: 4 (lower is better) Translates to: LGERYFGSYLRSSTEKTSWMALG*GHWFTL Trigger: CAGTGTGAACCAGTGGCCCCAGCCTAATGCCATCCA...TGAAGTCTTTTCAGTACTACTTCTGAGATAAGAACCAAAATATCTCTCGCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR GCA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGACTTTCCTGGGTAGATaGTGGCAGATGATTCCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: HSLFFWLNIVVFSRSILGTFLGR*WQMIPH Trigger: GTGAGGAATCATCTGCCAGCATCTACCCAGGAAAGT...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000200322.5 |
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| CDS-3UTR GCA 90 bp | TTGGCGAGAGATATTTTGGTTCTTATCTCAGAAGTAGTACTGAAAAGACTTCAAGCCACTGGTTCACACTaGTCTGCTGCTGCTGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LARDILVLISEVVLKRLQATGSH*SAAAGE Trigger: TTCACCAGCAGCAGCAGAGCAGTGTGAACCAGTGGC...TTGAAGTCTTTTCAGTACTACTTCTGAGATAAGAACCAAAATATCTCTCGCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR GCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACAGCCACTGGTTCACACTaGTCTGCTGCTGCTGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: HSPKLEHTTQSKKITNNTATGSH*SAAAGE Trigger: TTCACCAGCAGCAGCAGAGCAGTGTGAACCAGTGGC...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | ATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTCCTGGGTAGATGCTaGCAGATGATTCCTCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: ISHSLFFWLNIVVFSRSIFLGRC*QMIPHW Trigger: CCAGTGAGGAATCATCTGCCAGCATCTACCCAGGAA...GATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAGAGGTGTGCAACATTaGGAAAAGGAAGACTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: HSLFFWLNIVVFSRSILGRGVQH*EKEDSW Trigger: CCAGGAGTCTTCCTTTTCCCAATGTTGCACACCTCT...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | CTTCAATTAAACAATGCAGTTAATACGGCTCCACAGTCCAAAGTTGGAACACACAGAGGTGTGCAACATTaGGAAAAGGAAGACTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LQLNNAVNTAPQSKVGTHRGVQH*EKEDSW Trigger: CCAGGAGTCTTCCTTTTCCCAATGTTGCACACCTCT...GTGTGTTCCAACTTTGGACTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR TCA 90 bp | AATGTCTTGGCGAGAGATATTTTGGTTCTTATCTCAGAAGTAGTACTGAAAAGAACAGGTATCTGGGGATaGAGAGCTTGGGGAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: NVLARDILVLISEVVLKRTGIWG*RAWGSW Trigger: CCAACTTCCCCAAGCTCTTCATCCCCAGATACCTGT...TCTTTTCAGTACTACTTCTGAGATAAGAACCAAAATATCTCTCGCCAAGACATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR TCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACAACAGGTATCTGGGGATaGAGAGCTTGGGGAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: HSPKLEHTTQSKKITNNTTGIWG*RAWGSW Trigger: CCAACTTCCCCAAGCTCTTCATCCCCAGATACCTGT...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | TCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATGTTTCCTGGGTAGATGCTaGCAGATGATTCCTCACTGG | + |
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Preference number: 4 (lower is better) Translates to: SLLLAQYCCLFKKHLRECFLGRC*QMIPHW Trigger: CCAGTGAGGAATCATCTGCCAGCATCTACCCAGGAA...ACATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | ATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCAGAGGTGTGCAACATTaGGAAAAGGAAGACTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: ISHSLFFWLNIVVFSRSIRGVQH*EKEDSW Trigger: CCAGGAGTCTTCCTTTTCCCAATGTTGCACACCTCT...GATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | TCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATATCCTGGGTAGATGCTaGCAGATGATTCCTCACTGG | + |
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Preference number: 4 (lower is better) Translates to: SLFFWLNIVVFSRSILGNILGRC*QMIPHW Trigger: CCAGTGAGGAATCATCTGCCAGCATCTACCCAGGAT...ATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196749.5 |
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| CDS-3UTR CCA 90 bp | AATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATAGAGGTGTGCAACATTaGGAAAAGGAAGACTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: NIPLSLLLAQYCCLFKKHRGVQH*EKEDSW Trigger: CCAGGAGTCTTCCTTTTCCCAATGTTGCACACCTCT...ATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR GCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACAACTTTCCTGGGTAGATaGTGGCAGATGATTCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: HSPKLEHTTQSKKITNNTTFLGR*WQMIPH Trigger: GTGAGGAATCATCTGCCAGCATCTACCCAGGAAAGT...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000200322.5 |
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| CDS-3UTR GCA 90 bp | AATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATTTATCCTTTATTTCGTaGTTTGCCAGAGCAACAACC | + |
|
Preference number: 4 (lower is better) Translates to: NIPLSLLLAQYCCLFKKHLSFIS*FARATT Trigger: GGTTGTTGCTCTGGCAAAGCACGAAATAAAGGATAA...ATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR GCA 90 bp | TCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATGTTTATCCTTTATTTCGTaGTTTGCCAGAGCAACAACC | + |
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Preference number: 4 (lower is better) Translates to: SLLLAQYCCLFKKHLRECLSFIS*FARATT Trigger: GGTTGTTGCTCTGGCAAAGCACGAAATAAAGGATAA...ACATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | ATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCCAGATGATTCCTCACTaGAGGACTTATCCTTTATTT | + |
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Preference number: 4 (lower is better) Translates to: ISHSLFFWLNIVVFSRSIQMIPH*RTYPLF Trigger: AAATAAAGGATAAGTCCTCCAGTGAGGAATCATCTG...GATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | TCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATCGTATAGTGAGCATTTaGGAAGGTGTAATCCTTACT | + |
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Preference number: 4 (lower is better) Translates to: SLFFWLNIVVFSRSILGNRIVSI*EGVILT Trigger: AGTAAGGATTACACCTTCCCAAATGCTCACTATACG...ATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | AATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCGTATAGTGAGCATTTaGGAAGGTGTAATCCTTACT | + |
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Preference number: 4 (lower is better) Translates to: NIPLSLLLAQYCCLFKKHRIVSI*EGVILT Trigger: AGTAAGGATTACACCTTCCCAAATGCTCACTATACG...ATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR GCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACATTATCCTTTATTTCGTaGTTTGCCAGAGCAACAACC | + |
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Preference number: 4 (lower is better) Translates to: HSPKLEHTTQSKKITNNTLSFIS*FARATT Trigger: GGTTGTTGCTCTGGCAAAGCACGAAATAAAGGATAA...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | GAAGTAGTACTGAAAAGACTTCAATTAAACAATGCAGTTAATACGGCTCCACAGCAGATGATTCCTCACTaGAGGACTTATCCTTTATTT | + |
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Preference number: 4 (lower is better) Translates to: EVVLKRLQLNNAVNTAPQQMIPH*RTYPLF Trigger: AAATAAAGGATAAGTCCTCCAGTGAGGAATCATCTG...CTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAGTCTTTTCAGTACTACTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CCA 90 bp | TCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATGTCAGATGATTCCTCACTaGAGGACTTATCCTTTATTT | + |
|
Preference number: 4 (lower is better) Translates to: SLLLAQYCCLFKKHLRECQMIPH*RTYPLF Trigger: AAATAAAGGATAAGTCCTCCAGTGAGGAATCATCTG...ACATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACACGTATAGTGAGCATTTaGGAAGGTGTAATCCTTACT | + |
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Preference number: 4 (lower is better) Translates to: HSPKLEHTTQSKKITNNTRIVSI*EGVILT Trigger: AGTAAGGATTACACCTTCCCAAATGCTCACTATACG...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | GAAGTAGTACTGAAAAGACTTCAATTAAACAATGCAGTTAATACGGCTCCACAGGAAAAGGAAGACTCCTaGGAAAATTGCTTGAATTTT | + |
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Preference number: 4 (lower is better) Translates to: EVVLKRLQLNNAVNTAPQEKEDS*ENCLNF Trigger: AAAATTCAAGCAATTTTCCCAGGAGTCTTCCTTTTC...CTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAGTCTTTTCAGTACTACTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CCA 90 bp | TCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATGAAAAGGAAGACTCCTaGGAAAATTGCTTGAATTTT | + |
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Preference number: 4 (lower is better) Translates to: SLFFWLNIVVFSRSILGNEKEDS*ENCLNF Trigger: AAAATTCAAGCAATTTTCCCAGGAGTCTTCCTTTTC...ATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CCA 90 bp | CTTGGCGAGAGATATTTTGGTTCTTATCTCAGAAGTAGTACTGAAAAGACTTCAGAAAAGGAAGACTCCTaGGAAAATTGCTTGAATTTT | + |
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Preference number: 4 (lower is better) Translates to: LGERYFGSYLRSSTEKTSEKEDS*ENCLNF Trigger: AAAATTCAAGCAATTTTCCCAGGAGTCTTCCTTTTC...TGAAGTCTTTTCAGTACTACTTCTGAGATAAGAACCAAAATATCTCTCGCCAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CCA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACAGAAAAGGAAGACTCCTaGGAAAATTGCTTGAATTTT | + |
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Preference number: 4 (lower is better) Translates to: HSPKLEHTTQSKKITNNTEKEDS*ENCLNF Trigger: AAAATTCAAGCAATTTTCCCAGGAGTCTTCCTTTTC...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS CCA 90 bp | ATTTCCTCCACAGAGGTGCTGATGGATTCCTGGGTGGGCGTGTTATaGATGGCATTAGGCTGGGGCCACTGGTTCACACTGCTCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: ISSTEVLMDSWVGVL*MALGWGHWFTLLCC Trigger: GCAGCAGAGCAGTGTGAACCAGTGGCCCCAGCCTAATGCCATCCATAACACGCCCACCCAGGAATCCATCAGCACCTCTGTGGAGGAAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS CCA 90 bp | ATAATCTTCTTCAGGATTTCCTCCACAGAGGTGCTGATGGATTCCTaGGTGGGCGTGTTATGGATGGCATTAGGCTGGGGCCACTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: IIFFRISSTEVLMDS*VGVLWMALGWGHWF Trigger: GAACCAGTGGCCCCAGCCTAATGCCATCCATAACACGCCCACCCAGGAATCCATCAGCACCTCTGTGGAGGAAATCCTGAAGAAGATTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS TCA 90 bp | CACGCTATTGTCCAGCTTAGACTTTCCTGGGTAGATGCTGGCAGATaGTTCCTCACTGGAGGACTTATCCTTTATTTCGTGCTTTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: HAIVQLRLSWVDAGR*FLTGGLILYFVLCQ Trigger: CTGGCAAAGCACGAAATAAAGGATAAGTCCTCCAGTGAGGAATCATCTGCCAGCATCTACCCAGGAAAGTCTAAGCTGGACAATAGCGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000200322.5 |
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| CDS-3UTR CAA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAAGAGCTTGGGGAAGTaGGGGGATGGTGACCTGTTG | + |
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Preference number: 5 (lower is better) Translates to: HSLFFWLNIVVFSRSILGKSLGK*GDGDLL Trigger: CAACAGGTCACCATCCCCCAACTTCCCCAAGCTCTT...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CAA 90 bp | TCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAATAAGAGCTTGGGGAAGTaGGGGGATGGTGACCTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SLFFWLNIVVFSRSILGNKSLGK*GDGDLL Trigger: CAACAGGTCACCATCCCCCAACTTCCCCAAGCTCTT...ATTCCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CAA 90 bp | CACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCTTAGGGAGAATCCTTAGTTGTTaGGAAGAACACGCTATTGTC | + |
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Preference number: 5 (lower is better) Translates to: HSLFFWLNIVVFSRSILGRILSC*EEHAIV Trigger: GACAATAGCGTGTTCTTCCAAACAACTAAGGATTCT...CCCTAAGATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CAA 90 bp | ATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCAGAATCCTTAGTTGTTaGGAAGAACACGCTATTGTC | + |
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Preference number: 5 (lower is better) Translates to: ISHSLFFWLNIVVFSRSIRILSC*EEHAIV Trigger: GACAATAGCGTGTTCTTCCAAACAACTAAGGATTCT...GATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CAA 90 bp | AGACTTCAATTAAACAATGCAGTTAATACGGCTCCACAGTCCAAAGTTGGAACAGGTGACCTGTTGATATaGGATGTACTTGATCATATC | + |
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Preference number: 5 (lower is better) Translates to: RLQLNNAVNTAPQSKVGTGDLLI*DVLDHI Trigger: GATATGATCAAGTACATCCAATATCAACAGGTCACC...TGTTCCAACTTTGGACTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAGTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CAA 90 bp | ATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATCGGTGACCTGTTGATATaGGATGTACTTGATCATATC | + |
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Preference number: 5 (lower is better) Translates to: ISHSLFFWLNIVVFSRSIGDLLI*DVLDHI Trigger: GATATGATCAAGTACATCCAATATCAACAGGTCACC...GATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CAA 90 bp | CTTGGCGAGAGATATTTTGGTTCTTATCTCAGAAGTAGTACTGAAAAGACTTCAAGAATCCTTAGTTGTTaGGAAGAACACGCTATTGTC | + |
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Preference number: 5 (lower is better) Translates to: LGERYFGSYLRSSTEKTSRILSC*EEHAIV Trigger: GACAATAGCGTGTTCTTCCAAACAACTAAGGATTCT...TGAAGTCTTTTCAGTACTACTTCTGAGATAAGAACCAAAATATCTCTCGCCAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CAA 90 bp | GAAGTAGTACTGAAAAGACTTCAATTAAACAATGCAGTTAATACGGCTCCACAGTTCTGCTGGTTTAGGTaGACCTTTTGTTCTTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: EVVLKRLQLNNAVNTAPQFCWFR*TFCSSD Trigger: ATCTGAAGAACAAAAGGTCAACCTAAACCAGCAGAA...CTGTGGAGCCGTATTAACTGCATTGTTTAATTGAAGTCTTTTCAGTACTACTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076379.8 ENSMUST00000196749.5 |
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| CDS-3UTR CAA 90 bp | AATATCCCACTCTCTCTTCTTCTGGCTCAATATTGTTGTCTTTTCAAGAAGCATGGTGACCTGTTGATATaGGATGTACTTGATCATATC | + |
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Preference number: 5 (lower is better) Translates to: NIPLSLLLAQYCCLFKKHGDLLI*DVLDHI Trigger: GATATGATCAAGTACATCCAATATCAACAGGTCACC...ATGCTTCTTGAAAAGACAACAATATTGAGCCAGAAGAAGAGAGAGTGGGATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS-3UTR CAA 90 bp | CACAGTCCAAAGTTGGAACACACAACTCAATCCAAAAAGATTACAAACAATACAAGAATCCTTAGTTGTTaGGAAGAACACGCTATTGTC | + |
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Preference number: 5 (lower is better) Translates to: HSPKLEHTTQSKKITNNTRILSC*EEHAIV Trigger: GACAATAGCGTGTTCTTCCAAACAACTAAGGATTCT...TGTATTGTTTGTAATCTTTTTGGATTGAGTTGTGTGTTCCAACTTTGGACTGTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS CCA 72 bp | GATTCCTGGGTGGGCGTGTTATGGATGGCATTAGGCTaGGGCCACTGGTTCACACTGCTCTGCTGCTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: DSWVGVLWMALG*GHWFTLLCCCW Trigger: CCAGCAGCAGCAGAGCAGTGTGAACCAGTGGCCCCAGCCTAATGCCATCCATAACACGCCCACCCAGGAATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS CCA 72 bp | TTCAGGATTTCCTCCACAGAGGTGCTGATGGATTCCTaGGTGGGCGTGTTATGGATGGCATTAGGCTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: FRISSTEVLMDS*VGVLWMALGWG Trigger: GCCCCAGCCTAATGCCATCCATAACACGCCCACCCAGGAATCCATCAGCACCTCTGTGGAGGAAATCCTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS GCA 72 bp | GGTTCACACTGCTCTGCTGCTGCTGGTGAAGAGGTGTaGAACATTGGGAAAAGGAAGACTCCTGGGAAAATT | + |
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Preference number: 6 (lower is better) Translates to: GSHCSAAAGEEV*NIGKRKTPGKI Trigger: AATTTTCCCAGGAGTCTTCCTTTTCCCAATGTTGCACACCTCTTCACCAGCAGCAGCAGAGCAGTGTGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS CAA 72 bp | ACTGCTCTGCTGCTGCTGGTGAAGAGGTGTGCAACATaGGGAAAAGGAAGACTCCTGGGAAAATTGCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: TALLLLVKRCAT*GKGRLLGKLLE Trigger: TTCAAGCAATTTTCCCAGGAGTCTTCCTTTTCCCAATGTTGCACACCTCTTCACCAGCAGCAGCAGAGCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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| CDS TCA 72 bp | GTCCAGCTTAGACTTTCCTGGGTAGATGCTGGCAGATaGTTCCTCACTGGAGGACTTATCCTTTATTTCGTG | + |
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Preference number: 6 (lower is better) Translates to: VQLRLSWVDAGR*FLTGGLILYFV Trigger: CACGAAATAAAGGATAAGTCCTCCAGTGAGGAATCATCTGCCAGCATCTACCCAGGAAAGTCTAAGCTGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000200322.5 |
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| CDS CCA 72 bp | ACTTTCCTGGGTAGATGCTGGCAGATGATTCCTCACTaGAGGACTTATCCTTTATTTCGTGCTTTGCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: TFLGRCWQMIPH*RTYPLFRALPE Trigger: CTCTGGCAAAGCACGAAATAAAGGATAAGTCCTCCAGTGAGGAATCATCTGCCAGCATCTACCCAGGAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000200322.5 |
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| CDS TCA 72 bp | TTTTTCACTGACTTCCTCGGAAGATTCCTCACTGGATaGACTGCTAGCAGAATCCTTAGTTGTTTGGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: FFTDFLGRFLTG*TASRILSCLEE Trigger: TTCTTCCAAACAACTAAGGATTCTGCTAGCAGTTCATCCAGTGAGGAATCTTCCGAGGAAGTCAGTGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 |
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| CDS CAA 72 bp | AGCTTGGGGAAGTTGGGGGATGGTGACCTGTTGATATaGGATGTACTTGATCATATCAATAATCTTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: SLGKLGDGDLLI*DVLDHINNLLQ Trigger: CTGAAGAAGATTATTGATATGATCAAGTACATCCAATATCAACAGGTCACCATCCCCCAACTTCCCCAAGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000076379.8 ENSMUST00000196585.2 ENSMUST00000196749.5 ENSMUST00000200322.5 |
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