RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CSMD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022311

Ensembl transcript IDs: ENSMUST00000100670.10, ENSMUST00000160658.8, ENSMUST00000161653.2, ENSMUST00000162830.8

Found 1424 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGCAATGGTTTCTCATAGGCACTCTTGTCTCATGATACAAAAGTaGGACCCTTCACAGAACAATCCAGATTTGAAATGGACAACAACA +
Preference number: 1 (lower is better)
Translates to: GAMVSHRHSCLMIQK*DPSQNNPDLKWTTT
Trigger: TGTTGTTGTCCATTTCAAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGCCTATGAGAAACCATTGCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR CCA 90 bp TTAACACAGAATGCCAGGTTGAGGTGGGCAATCATATTACTTTTGTaGCATCAATTCACCCATAAATATTTAAAGTGTGTGCCATTCTTA +
Preference number: 1 (lower is better)
Translates to: LTQNARLRWAIILLL*HQFTHKYLKCVPFL
Trigger: TAAGAATGGCACACACTTTAAATATTTATGGGTGAATTGATGCCACAAAAGTAATATGATTGCCCACCTCAACCTGGCATTCTGTGTTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATGCAGATTTGTGGTGTaGACTCCAGACATGTGGGTG +
Preference number: 2 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQCRFVV*TPDMWV
Trigger: CACCCACATGTCTGGAGTTCACACCACAAATCTGCA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCTCCAGACATGTGGGTaGAATGTAGCTTTTGACAGC +
Preference number: 2 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLQTCG*NVAFDS
Trigger: GCTGTCAAAAGCTACATTGCACCCACATGTCTGGAG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTCCAGACATGTGGGTaGAATGTAGCTTTTGACAGC +
Preference number: 2 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLQTCG*NVAFDS
Trigger: GCTGTCAAAAGCTACATTGCACCCACATGTCTGGAG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAAAGCAAATAAACTGTaGGTAAGCACTCCCAGAGTG +
Preference number: 2 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVKANKL*VSTPRV
Trigger: CACTCTGGGAGTGCTTACTCACAGTTTATTTGCTTT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTACAGAGAGTTCACAATaGGTATGTGTTTATTTGGTG +
Preference number: 2 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFTESSQ*VCVYLV
Trigger: CACCAAATAAACACATACTCATTGTGAACTCTCTGT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATTATTAACACAGAATaGCAGGTTGAGGTGGGCAAT +
Preference number: 2 (lower is better)
Translates to: DNREIRKVTESPSHLKKLIINTE*QVEVGN
Trigger: ATTGCCCACCTCAACCTGGCATTCTGTGTTAATAAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAAAGCAAATAAACTGTaGGTAAGCACTCCCAGAGTG +
Preference number: 2 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLKANKL*VSTPRV
Trigger: CACTCTGGGAGTGCTTACTCACAGTTTATTTGCTTT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR CAA 90 bp TTATTAACACAGAATGCCAGGTTGAGGTGGGCAATCATATTACTTTaGTGGCATCAATTCACCCATAAATATTTAAAGTGTGTGCCATTC +
Preference number: 2 (lower is better)
Translates to: LLTQNARLRWAIILL*WHQFTHKYLKCVPF
Trigger: GAATGGCACACACTTTAAATATTTATGGGTGAATTGATGCCACAAAAGTAATATGATTGCCCACCTCAACCTGGCATTCTGTGTTAATAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAATACTGATAGTGGATaGTCCTCCAATATATGCAAA +
Preference number: 2 (lower is better)
Translates to: DNREIRKVTESPSHLKKLNTDSG*SSNICK
Trigger: TTTGCATATATTGGAGGAGCATCCACTATCAGTATT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAATACTGATAGTGGATaGTCCTCCAATATATGCAAA +
Preference number: 2 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVNTDSG*SSNICK
Trigger: TTTGCATATATTGGAGGAGCATCCACTATCAGTATT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAATACTGATAGTGGATaGTCCTCCAATATATGCAAA +
Preference number: 2 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNNTDSG*SSNICK
Trigger: TTTGCATATATTGGAGGAGCATCCACTATCAGTATT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR TCA 72 bp CAGGTGCAATGGTTTCTCATAGGCACTCTTGTCTCATaGTACAAAAGTGAGACCCTTCACAGAACAATCCAG +
Preference number: 3 (lower is better)
Translates to: QVQWFLIGTLVS*YKSETLHRTIQ
Trigger: CTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGCCTATGAGAAACCATTGCACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR-3UTR CAA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGAAGCCAGTGATCTATaGACTCTGGTAAGTATAGCT +
Preference number: 3 (lower is better)
Translates to: DNREIRKVTESPSHLKKLEASDL*TLVSIA
Trigger: AGCTATACTTACCAGAGTCAATAGATCACTGGCTTC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR CAA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGAAGCCAGTGATCTATaGACTCTGGTAAGTATAGCT +
Preference number: 3 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVEASDL*TLVSIA
Trigger: AGCTATACTTACCAGAGTCAATAGATCACTGGCTTC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR CCA 72 bp GTATCTGTATTATTAACACAGAATGCCAGGTTGAGGTaGGCAATCATATTACTTTTGTGGCATCAATTCACC +
Preference number: 3 (lower is better)
Translates to: VSVLLTQNARLR*AIILLLWHQFT
Trigger: GGTGAATTGATGCCACAAAAGTAATATGATTGCCCACCTCAACCTGGCATTCTGTGTTAATAATACAGATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR CAA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGAAGCCAGTGATCTATaGACTCTGGTAAGTATAGCT +
Preference number: 3 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLEASDL*TLVSIA
Trigger: AGCTATACTTACCAGAGTCAATAGATCACTGGCTTC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR TCA 72 bp TACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTaGAATGGACAACAACAGAGAGTTCACAATGAGTAT +
Preference number: 3 (lower is better)
Translates to: YKSETLHRTIQI*NGQQQRVHNEY
Trigger: ATACTCATTGTGAACTCTCTGTTGTTGTCCATTTCAAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR CCA 72 bp AATGCCAGGTTGAGGTGGGCAATCATATTACTTTTGTaGCATCAATTCACCCATAAATATTTAAAGTGTGTG +
Preference number: 3 (lower is better)
Translates to: NARLRWAIILLL*HQFTHKYLKCV
Trigger: CACACACTTTAAATATTTATGGGTGAATTGATGCCACAAAAGTAATATGATTGCCCACCTCAACCTGGCATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
3UTR-3UTR CAA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCCTGAAAAGTGTGCTTaGTTTAGCAGTGAACTAAAA +
Preference number: 3 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNPEKCA*FSSELK
Trigger: TTTTAGTTCACTGCTAAACAAAGCACACTTTTCAGG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGCAGGACAGAGCACTTaGCACACTGGAGGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRAGQST*HTGGAP
Trigger: TGGGGCACCTCCAGTGTGTCAAGTGCTCTGTCCTGC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGAAGTTCCGAACCAGTaGGTCGTGCCAGTGGTTGGG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCREVPNQ*VVPVVG
Trigger: CCCAACCACTGGCACGACTCACTGGTTCGGAACTTC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTCCTGTCTGGAGCCATaGCCAGGTGTACCTGGATCC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSCLEP*PGVPGS
Trigger: GGATCCAGGTACACCTGGTCATGGCTCCAGACAGGA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCCATATCGACGGCCATaGACAGGGATGCCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVPYRRP*TGMPGS
Trigger: GGACCCTGGCATCCCTGTCCATGGCCGTCGATATGG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAACCCGGGCTGGATATaGTGCCACTGGAACCTCTCA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNPGWI*CHWNLS
Trigger: TGAGAGGTTCCAGTGGCATCATATCCAGCCCGGGTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGAAGTTCCGAACCAGTaGGTCGTGCCAGTGGTTGGG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVEVPNQ*VVPVVG
Trigger: CCCAACCACTGGCACGACTCACTGGTTCGGAACTTC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAACTCCATGTCCCATCTaGCTGGCAGGTGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGTPCPI*LAGGCG
Trigger: ACCACAGCCACCTGCCAGTCAGATGGGACATGGAGT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTCCTGTCTGGAGCCATaGCCAGGTGTACCTGGATCC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSCLEP*PGVPGS
Trigger: GGATCCAGGTACACCTGGTCATGGCTCCAGACAGGA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATCCTGTCTGGAGCCATaGCCAGGTGTACCTGGATCC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGSCLEP*PGVPGS
Trigger: GGATCCAGGTACACCTGGTCATGGCTCCAGACAGGA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTATGGGAAGGCACCTCTaGCCCAGTAAAGGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRMGRHL*PSKGSQ
Trigger: CTGGGAACCTTTACTGGGGCAGAGGTGCCTTCCCAT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGGTGCCCCATCCATCTaGAGTCGCTCTCCCAATCTG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGGAPSI*SRSPNL
Trigger: CAGATTGGGAGAGCGACTGCAGATGGATGGGGCACC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTCCGTGTCCCATTCATaGGGACTCCTGGATCACGAC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSVSHS*GLLDHD
Trigger: GTCGTGATCCAGGAGTCCCCATGAATGGGACACGGA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCACCTTGGCAGCGGATaGTTCCAATTCCGGCTGACT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRHLGSG*FQFRLT
Trigger: AGTCAGCCGGAATTGGAACCATCCGCTGCCAAGGTG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACATGTCCCATCTGACTaGCAGGTGGCTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGHVPSD*QVAVVS
Trigger: GCTCACCACAGCCACCTGCCAGTCAGATGGGACATG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCACCACTTTGCACACTaGTGGAGGATGGCTCCACTG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRHHFAH*WRMAPL
Trigger: CAGTGGAGCCATCCTCCACCAGTGTGCAAAGTGGTG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAACCCGGGCTGGATATaGTGCCACTGGAACCTCTCA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGNPGWI*CHWNLS
Trigger: TGAGAGGTTCCAGTGGCATCATATCCAGCCCGGGTT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAACAGAGGAGACTGCTaGGTTGGCCCATCAAACACC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNRGDC*VGPSNT
Trigger: GGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATGGGAAGGCACCTCTaGCCCAGTAAAGGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGMGRHL*PSKGSQ
Trigger: CTGGGAACCTTTACTGGGGCAGAGGTGCCTTCCCAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCCATATCGACGGCCATaGACAGGGATGCCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFPYRRP*TGMPGS
Trigger: GGACCCTGGCATCCCTGTCCATGGCCGTCGATATGG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAGGTGCTATACAGACTaGTGGGCTGGGCTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGRCYTD*WAGLPE
Trigger: TTCTGGCAGCCCAGCCCACCAGTCTGTATAGCACCT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGAGCACTTGACACACTaGAGGTGCCCCATCCATCTG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVEHLTH*RCPIHL
Trigger: CAGATGGATGGGGCACCTCCAGTGTGTCAAGTGCTC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAACAGGCACACAGGATaGGAGCTGACCAGACCAGTT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNRHTG*ELTRPV
Trigger: AACTGGTCTGGTCAGCTCCCATCCTGTGTGCCTGTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACACCACTTTGCACACTaGTGGAGGATGGCTCCACTG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGHHFAH*WRMAPL
Trigger: CAGTGGAGCCATCCTCCACCAGTGTGCAAAGTGGTG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGTGCCACTTGGTCCTTaGAGATTAGAGCCACATGTC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRVPLGP*RLEPHV
Trigger: GACATGTGGCTCTAATCTTCAAGGACCAAGTGGCAC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTTCCAGTTAGCACCTaGAGCACAGTCCTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLPVST*STVLGS
Trigger: AGACCCAAGGACTGTGCTTCAGGTGCTAACTGGAAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCAAAGCGACGAGCATTaGTGGGTATTCCAGGATCTG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRQSDEH*WVFQDL
Trigger: CAGATCCTGGAATACCCATCAATGCTCGTCGCTTTG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTACTCCACTTGGAGCTaGAAAGTGGCCACCACATGG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVYSTWS*KVATTW
Trigger: CCATGTGGTGGCCACTTTTCAGCTCCAAGTGGAGTA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATACTCCACTTGGAGCTaGAAAGTGGCCACCACATGG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGYSTWS*KVATTW
Trigger: CCATGTGGTGGCCACTTTTCAGCTCCAAGTGGAGTA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCACCGACTCCAAAGCTaGATCCAACTCGGCTACCAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVHRLQS*IQLGYH
Trigger: ATGGTAGCCGAGTTGGATTCAGCTTTGGAGTCGGTG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACACCGCCAAGACAGATaGTCTCAGAAGAACCCTCCA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGHRQDR*SQKNPP
Trigger: TGGAGGGTTCTTCTGAGATCATCTGTCTTGGCGGTG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCTGATGATTCTCCCTTaGAACGGCCGCCACATTCAG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVLMILP*NGRHIQ
Trigger: CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTGTGTGGGTATGGATaGGGGAAGTTTGGCGAAAGG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLCGYG*GKFGER
Trigger: CCTTTCGCCAAACTTCCCTCATCCATACCCACACAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCTGTGTGGGTATGGATaGGGGAAGTTTGGCGAAAGG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVLCGYG*GKFGER
Trigger: CCTTTCGCCAAACTTCCCTCATCCATACCCACACAG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAACAGAGGAGACTGCTaGGTTGGCCCATCAAACACC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVNRGDC*VGPSNT
Trigger: GGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTACTCCATGTCCCATCTaGCTGGCAGGTGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFTPCPI*LAGGCG
Trigger: ACCACAGCCACCTGCCAGTCAGATGGGACATGGAGT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATCCTGTCTGGAGCCATaGCCAGGTGTACCTGGATCC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPESCLEP*PGVPGS
Trigger: GGATCCAGGTACACCTGGTCATGGCTCCAGACAGGA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGATCTGGGGAGGAGTTaGGCAGGTAACAGCTCTACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVDLGRS*AGNSST
Trigger: TGTAGAGCTGTTACCTGCTCAACTCCTCCCCAGATC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGCTTTTGTAGACCCCTaGAAGCAGCAACTCCATGTC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRAFVDP*KQQLHV
Trigger: GACATGGAGTTGCTGCTTTCAGGGGTCTACAAAAGC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGGTGCCCCATCCATCTaGAGTCGCTCTCCCAATCTG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFGAPSI*SRSPNL
Trigger: CAGATTGGGAGAGCGACTGCAGATGGATGGGGCACC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGGTGCCCCATCCATCTaGAGTCGCTCTCCCAATCTG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEGAPSI*SRSPNL
Trigger: CAGATTGGGAGAGCGACTGCAGATGGATGGGGCACC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAATTCCACAAGAAATTaGTTGGCAGGCAGGGACGGG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNSTRN*LAGRDG
Trigger: CCCGTCCCTGCCTGCCAAGCAATTTCTTGTGGAATT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCACATTGCACAGCTTTaGACTCTGGCTGTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRHIAQL*TLAVFQ
Trigger: CTGGAAGACAGCCAGAGTGCAAAGCTGTGCAATGTG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGATTCATGGGGACTCCTaGATCACGACAGGCAGTTGC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVIHGDS*ITTGSC
Trigger: GCAACTGCCTGTCGTGATCCAGGAGTCCCCATGAAT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATGCTATACAGACTGGTaGGCTGGGCTGCCAGAAGTA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGCYTDW*AGLPEV
Trigger: TACTTCTGGCAGCCCAGCCCACCAGTCTGTATAGCA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATTAGGGACAGGTGGTaGAGGTTGGCACACTCTCAG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGIRDRW*RLAHSQ
Trigger: CTGAGAGTGTGCCAACCTCCACCACCTGTCCCTAAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCCAGTCGTAGTTCATTaGCAGGACAGAGCACTTGAC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRPVVVH*QDRALD
Trigger: GTCAAGTGCTCTGTCCTGCCAATGAACTACGACTGG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCATGTCCCATCTGACTaGCAGGTGGCTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHVPSD*QVAVVS
Trigger: GCTCACCACAGCCACCTGCCAGTCAGATGGGACATG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACCAGACCTGAATCACTaGGACTCCTTACTTGCACTC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGPDLNH*DSLLAL
Trigger: GAGTGCAAGTAAGGAGTCTCAGTGATTCAGGTCTGG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTGCCACTTGGTCCTTaGAGATTAGAGCCACATGTC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGVPLGP*RLEPHV
Trigger: GACATGTGGCTCTAATCTTCAAGGACCAAGTGGCAC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCCAGATCAAAGTCATTaGAGGAAAGGTGGATCCGGC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVPDQSH*RKGGSG
Trigger: GCCGGATCCACCTTTCCTTCAATGACTTTGATCTGG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAGCGCAATTGAGCCCTaGAGTTTCCATAAAGGCCAG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSAIEP*SFHKGQ
Trigger: CTGGCCTTTATGGAAACTTCAGGGCTCAATTGCGCT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAGCGCAATTGAGCCCTaGAGTTTCCATAAAGGCCAG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGSAIEP*SFHKGQ
Trigger: CTGGCCTTTATGGAAACTTCAGGGCTCAATTGCGCT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGACTCGGCTACCATATTaGGGAATCCCAGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVTRLPY*GIPGSS
Trigger: TGAAGACCCTGGGATTCCTCAATATGGTAGCCGAGT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGATTGCATCCATAGATaGTGGTGCTGCCAGCAAAGT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRDCIHR*WCCQQS
Trigger: ACTTTGCTGGCAGCACCATCATCTATGGATGCAATC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCTCTACATGTTGGCATaGCTCCACTCCATGTGCCAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVLYMLA*LHSMCH
Trigger: ATGGCACATGGAGTGGAGTCATGCCAACATGTAGAG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGCTTTTGTAGACCCCTaGAAGCAGCAACTCCATGTC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVAFVDP*KQQLHV
Trigger: GACATGGAGTTGCTGCTTTCAGGGGTCTACAAAAGC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGGGTTTGGATTCCTTTaGTCTGCTTTCTCCTTTGCG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRGFGFL*SAFSFA
Trigger: CGCAAAGGAGAAAGCAGAGCAAAGGAATCCAAACCC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGTGGCAGTCCTGATATaGTCCTCTAACTCACCAATG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRVAVLI*SSNSPM
Trigger: CATTGGTGAGTTAGAGGAGCATATCAGGACTGCCAC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTCATCACAGGAGAACTaGACAGTGGATCCAAGGCTA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSSQEN*TVDPRL
Trigger: TAGCCTTGGATCCACTGTGCAGTTCTCCTGTGATGA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATGGGAAGGCACCTCTaGCCCAGTAAAGGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEMGRHL*PSKGSQ
Trigger: CTGGGAACCTTTACTGGGGCAGAGGTGCCTTCCCAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACGAACCAGTGAGTCGTaGCAGTGGTTGGGTAAAACT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGRTSES*QWLGKT
Trigger: AGTTTTACCCAACCACTGGCACGACTCACTGGTTCG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTTCTCTCTCCAGTCATaGACTTCAGAAGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRFSLQS*TSEGCF
Trigger: GAAGCAGCCTTCTGAAGTGCATGACTGGAGAGAGAA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGACTGGTGGGCTGGGCTaGCAGAAGTATCGATTTTCT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVTGGLG*QKYRFS
Trigger: AGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAACTGGTGGGCTGGGCTaGCAGAAGTATCGATTTTCT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGTGGLG*QKYRFS
Trigger: AGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTCCGAAAAGCCAAGTaGATGGTATTCGAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLRKAK*MVFELL
Trigger: GAGCAGCTCGAATACCATGCACTTGGCTTTTCGGAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAACTTCCAAGTCTCGGTaGATTGTTGTCTCCCCCATC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGTSKSR*IVVSPI
Trigger: GATGGGGGAGACAACAATGCACCGAGACTTGGAAGT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTTCTGTCAGGATTTCTaGATTAGGGACAGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRFCQDF*IRDRWW
Trigger: CCACCACCTGTCCCTAATGCAGAAATCCTGACAGAA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGTCGCTCTCCCAATCTaGATGTCAGAATTGCATTGC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRVALPI*MSELHC
Trigger: GCAATGCAATTCTGACATGCAGATTGGGAGAGCGAC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGTTAGCCTGACACTGTaGCTTTGTTGGTCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRVSLTL*LCWSLH
Trigger: ATGCAAGGACCAACAAAGGCACAGTGTCAGGCTAAC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCCTGGATTACCACATTaGACAGCTTTGCACTCTGGC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVPGLPH*TALHSG
Trigger: GCCAGAGTGCAAAGCTGTGCAATGTGGTAATCCAGG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTACTGGTGGTGGTAGGTaGAATCCTGTTAACCTTGTC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRTGGGR*NPVNLV
Trigger: GACAAGGTTAACAGGATTCCACCTACCACCACCAGT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCTGGTTCTGCTACAATaGTCCATGTGCAGTCTGCAT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRLVLLQ*SMCSLH
Trigger: ATGCAGACTGCACATGGACCATTGTAGCAGAACCAG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCCATATCGACGGCCATaGACAGGGATGCCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFPYRRP*TGMPGS
Trigger: GGACCCTGGCATCCCTGTCCATGGCCGTCGATATGG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAGTCGTGCCAGTGGTTaGGTAAAACTACCGTTCTCT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSRASG*VKLPFS
Trigger: AGAGAACGGTAGTTTTACCCAACCACTGGCACGACT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAGTGAGTCGTGCCAGTaGTTGGGTAAAACTACCGTT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSESCQ*LGKTTV
Trigger: AACGGTAGTTTTACCCAACCACTGGCACGACTCACT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACCTTCTTCCAAATCTTaGCTCGGGCACAGAACTGCA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGPSSKS*LGHRTA
Trigger: TGCAGTTCTGTGCCCGAGCCAAGATTTGGAAGAAGG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCCTTCTTCCAAATCTTaGCTCGGGCACAGAACTGCA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVPSSKS*LGHRTA
Trigger: TGCAGTTCTGTGCCCGAGCCAAGATTTGGAAGAAGG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAATTCCAGCTCCCTCTaGCACTGTGATCTTCCAAAC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNSSSL*HCDLPN
Trigger: GTTTGGAAGATCACAGTGCCAGAGGGAGCTGGAATT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCACCTTGGCAGCGGATaGTTCCAATTCCGGCTGACT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHLGSG*FQFRLT
Trigger: AGTCAGCCGGAATTGGAACCATCCGCTGCCAAGGTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAAGAGCTTCACACCTTaGCAGCGGATGGTTCCAATT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRKSFTP*QRMVPI
Trigger: AATTGGAACCATCCGCTGCCAAGGTGTGAAGCTCTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGAGCACTTGACACACTaGAGGTGCCCCATCCATCTG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFEHLTH*RCPIHL
Trigger: CAGATGGATGGGGCACCTCCAGTGTGTCAAGTGCTC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGACCCGCTAGACATCTaGTTTCTGATCCACTCCACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVDPLDI*FLIHST
Trigger: TGTGGAGTGGATCAGAAACCAGATGTCTAGCGGGTC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACACCACTTTGCACACTaGTGGAGGATGGCTCCACTG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEHHFAH*WRMAPL
Trigger: CAGTGGAGCCATCCTCCACCAGTGTGCAAAGTGGTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAATCACTTTCCTGTCTaGAGCCATGACCAGGTGTAC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNHFPV*SHDQVY
Trigger: GTACACCTGGTCATGGCTCCAGACAGGAAAGTGATT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTCTCAATCCATTGGCTaGTATACCTGGGTCTCCACA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSQSIG*YTWVST
Trigger: TGTGGAGACCCAGGTATACCAGCCAATGGATTGAGA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCTTCCATTAGAGATCTaGGGAGGAGTTGAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRLPLEI*GGVEQV
Trigger: TACCTGCTCAACTCCTCCCCAGATCTCTAATGGAAG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTCCCCTCCACAGACTTaGCATTGGTGTCATACATGG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSPPQT*HWCHTW
Trigger: CCATGTATGACACCAATGCCAAGTCTGTGGAGGGGA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATCCCCTCCACAGACTTaGCATTGGTGTCATACATGG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGSPPQT*HWCHTW
Trigger: CCATGTATGACACCAATGCCAAGTCTGTGGAGGGGA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGCTATGCAGGTAAGTTaGGGATGGCCATCAAGGATA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGAMQVS*GWPSRI
Trigger: TATCCTTGATGGCCATCCTCAACTTACCTGCATAGC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGCTATGCAGGTAAGTTaGGGATGGCCATCAAGGATA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVAMQVS*GWPSRI
Trigger: TATCCTTGATGGCCATCCTCAACTTACCTGCATAGC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACTTCCAGTTAGCACCTaGAGCACAGTCCTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPELPVST*STVLGS
Trigger: AGACCCAAGGACTGTGCTTCAGGTGCTAACTGGAAG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAATTGGGGAATCTGGTaGGTCACCATCTTTAACAGC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNWGIW*VTIFNS
Trigger: GCTGTTAAAGATGGTGACTCACCAGATTCCCCAATT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTATAGAGTGGTCAGCTTaGAATTCCAGTCGCAGTATG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRIEWSA*NSSRSM
Trigger: CATACTGCGACTGGAATTTCAAGCTGACCACTCTAT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGATTGCATCCATAGATaGTGGTGCTGCCAGCAAAGT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGDCIHR*WCCQQS
Trigger: ACTTTGCTGGCAGCACCATCATCTATGGATGCAATC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTCGGAGTATATCATGTaGGGCTTCTGTATCGAAAGC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSEYIM*GFCIES
Trigger: GCTTTCGATACAGAAGCCTCACATGATATACTCCGA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATATCCAGGATCACACTaGAAGACAACAGTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGYPGSH*KTTVSP
Trigger: TGGGGACACTGTTGTCTTTCAGTGTGATCCTGGATA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGAAATCCGGTGTAACTaGCAGATCCATCACTCCGAA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGEIRCN*QIHHSE
Trigger: TTCGGAGTGATGGATCTGTCAGTTACACCGGATTTC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGAAATCCGGTGTAACTaGCAGATCCATCACTCCGAA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVEIRCN*QIHHSE
Trigger: TTCGGAGTGATGGATCTGTCAGTTACACCGGATTTC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTAACTACTTGTACTTaGATTCCAGCTCCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLTTCT*IPAPSG
Trigger: GCCAGAGGGAGCTGGAATTCAAGTACAAGTAGTTAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACACACCACTGAAGTCTaGCATTGCACCTCCACACTG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEHTTEV*HCTSTL
Trigger: CAGTGTGGAGGTGCAATGTCAGACTTCAGTGGTGTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGCAGGACAGAGCACTTaGCACACTGGAGGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLAGQST*HTGGAP
Trigger: TGGGGCACCTCCAGTGTGTCAAGTGCTCTGTCCTGC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATAACCCTTTTCCACTaGGATGCTCCACGCACACAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGITLFH*DAPRTH
Trigger: ATGTGTGCGTGGAGCATCTCAGTGGAAAAGGGTTAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGGTGAGCTCCTTGGATaGCAGTCTGTATCCATCATT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVGELLG*QSVSII
Trigger: AATGATGGATACAGACTGTCATCCAAGGAGCTCACC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCACTGCCTGTTAGCCTaGCACTGTGCCTTTGTTGGT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHCLLA*HCAFVG
Trigger: ACCAACAAAGGCACAGTGTCAGGCTAACAGGCAGTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACACTGCCTGTTAGCCTaGCACTGTGCCTTTGTTGGT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEHCLLA*HCAFVG
Trigger: ACCAACAAAGGCACAGTGTCAGGCTAACAGGCAGTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGATCTGGGGAGGAGTTaGGCAGGTAACAGCTCTACA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEDLGRS*AGNSST
Trigger: TGTAGAGCTGTTACCTGCTCAACTCCTCCCCAGATC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGGATACAGTAACATCTaGAGGTGTGCTAGCAACATC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRGYSNI*RCASNI
Trigger: GATGTTGCTAGCACACCTGCAGATGTTACTGTATCC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGCTGATTTGATGTGCTaGTTAGTGTCAGTCCTCGCA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVADLMC*LVSVLA
Trigger: TGCGAGGACTGACACTAAGCAGCACATCAAATCAGC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGCTGATTTGATGTGCTaGTTAGTGTCAGTCCTCGCA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGADLMC*LVSVLA
Trigger: TGCGAGGACTGACACTAAGCAGCACATCAAATCAGC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATGCACTTCAGAAGGCTaGTTCCATGGAGAGTATAGC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGCTSEG*FHGEYS
Trigger: GCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTTCTCTCTCCAGTCATaGACTTCAGAAGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVFSLQS*TSEGCF
Trigger: GAAGCAGCCTTCTGAAGTGCATGACTGGAGAGAGAA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCTCAAGATGAAATCCTaGAGCAGAGACACTGATGTC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRLKMKS*SRDTDV
Trigger: GACATCAGTGTCTCTGCTGCAGGATTTCATCTTGAG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATGTGCAATCTAAGCTaGTGGGGTAGTTTCCGGGAA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGMCNLS*WGSFRE
Trigger: TTCCCGGAAACTACCCCAGCAGCTTAGATTGCACAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTAGCCTGACACTGTaGCTTTGTTGGTCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGVSLTL*LCWSLH
Trigger: ATGCAAGGACCAACAAAGGCACAGTGTCAGGCTAAC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGAGAACGCTTTCCTGTaGAGGAATAGTGAACTGTTG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRENAFL*RNSELL
Trigger: CAACAGTTCACTATTCCTGCACAGGAAAGCGTTCTC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCACTCCAGGTACCATTaGCTACACAGGTCAGAACGG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHSRYH*LHRSER
Trigger: CCGTTCTGACCTGTGTAGGCAATGGTACCTGGAGTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATGAGCCACTCCAAGTaGCATCAGTTTGGCATAACC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGMSHSK*HQFGIT
Trigger: GGTTATGCCAAACTGATGGCACTTGGAGTGGCTCAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGATCTGCATACTCTATaGTCAGTTCCCCCTGCTAAG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGDLHTL*SVPPAK
Trigger: CTTAGCAGGGGGAACTGAGCATAGAGTATGCAGATC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACAGGCTCCCGGGGTTTaGATTCCTTTGCTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEQAPGV*IPLLCF
Trigger: AAAGCAGAGCAAAGGAATCCAAACCCCGGGAGCCTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCAGGCTCCCGGGGTTTaGATTCCTTTGCTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFQAPGV*IPLLCF
Trigger: AAAGCAGAGCAAAGGAATCCAAACCCCGGGAGCCTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACAGTACACCTTTGGGTaGAACTCCTGGATTTCCACA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGQYTFG*NSWIST
Trigger: TGTGGAAATCCAGGAGTTCCACCCAAAGGTGTACTG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCAGTACACCTTTGGGTaGAACTCCTGGATTTCCACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVQYTFG*NSWIST
Trigger: TGTGGAAATCCAGGAGTTCCACCCAAAGGTGTACTG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTCCTCGGAAAGTCTATaGCTGGTGACAGCTGTAACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSSESL*LVTAVT
Trigger: TGTTACAGCTGTCACCAGCCATAGACTTTCCGAGGA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTGGAGCTCCACATCTTaGAATTGGTCCACTCCACAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVWSSTS*NWSTPH
Trigger: ATGTGGAGTGGACCAATTCCAAGATGTGGAGCTCCA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAGAAGGGGCTCTTCATaGCTCAGTCGGTATCCTGGA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPERRGSS*LSRYPG
Trigger: TCCAGGATACCGACTGAGCCATGAAGAGCCCCTTCT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGATCACAGGTTGGGAGTaGATGACTCCACCAATGGTT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVITGWE*MTPPMV
Trigger: AACCATTGGTGGAGTCATCCACTCCCAACCTGTGAT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATCACAGGTTGGGAGTaGATGACTCCACCAATGGTT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGITGWE*MTPPMV
Trigger: AACCATTGGTGGAGTCATCCACTCCCAACCTGTGAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAGTCGTGCCAGTGGTTaGGTAAAACTACCGTTCTCT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSRASG*VKLPFS
Trigger: AGAGAACGGTAGTTTTACCCAACCACTGGCACGACT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAGTGAGTCGTGCCAGTaGTTGGGTAAAACTACCGTT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSESCQ*LGKTTV
Trigger: AACGGTAGTTTTACCCAACCACTGGCACGACTCACT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATTCATGGGGACTCCTaGATCACGACAGGCAGTTGC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEIHGDS*ITTGSC
Trigger: GCAACTGCCTGTCGTGATCCAGGAGTCCCCATGAAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATTCATGGGGACTCCTaGATCACGACAGGCAGTTGC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFIHGDS*ITTGSC
Trigger: GCAACTGCCTGTCGTGATCCAGGAGTCCCCATGAAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTGCTATACAGACTGGTaGGCTGGGCTGCCAGAAGTA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFCYTDW*AGLPEV
Trigger: TACTTCTGGCAGCCCAGCCCACCAGTCTGTATAGCA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAATTCCAGCTCCCTCTaGCACTGTGATCTTCCAAAC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGNSSSL*HCDLPN
Trigger: GTTTGGAAGATCACAGTGCCAGAGGGAGCTGGAATT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTTTAATTCCACTGCTTaGGGTTTGTGGCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRFNSTA*GLWLRT
Trigger: TGTCCTGAGCCACAAACCCCAAGCAGTGGAATTAAA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAAACCCATTTCGAAATaGGCGAGGATCAGGACAGCT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVKPISK*ARIRTA
Trigger: AGCTGTCCTGATCCTCGCCCATTTCGAAATGGGTTT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAAGAGCTTCACACCTTaGCAGCGGATGGTTCCAATT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVKSFTP*QRMVPI
Trigger: AATTGGAACCATCCGCTGCCAAGGTGTGAAGCTCTT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATTAGGGACAGGTGGTaGAGGTTGGCACACTCTCAG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEIRDRW*RLAHSQ
Trigger: CTGAGAGTGTGCCAACCTCCACCACCTGTCCCTAAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATGCATTAGGGACAGGTaGTGGAGGTTGGCACACTCT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPECIRDR*WRLAHS
Trigger: AGAGTGTGCCAACCTCCACCACCTGTCCCTAATGCA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTATGAGGTGGAGATTCTaGTGTGCTACAGTAAAAGGC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRMRWRF*CATVKG
Trigger: GCCTTTTACTGTAGCACACCAGAATCTCCACCTCAT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCATGTCCCATCTGACTaGCAGGTGGCTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFHVPSD*QVAVVS
Trigger: GCTCACCACAGCCACCTGCCAGTCAGATGGGACATG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTACACTGTGCCTTTGTTaGTCCTTGCATAAGATACCC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRTLCLC*SLHKIP
Trigger: GGGTATCTTATGCAAGGACCAACAAAGGCACAGTGT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCAATGTCCATTTAACTaGCAAGTCCTGGATGCCTGG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVQCPFN*QVLDAW
Trigger: CCAGGCATCCAGGACTTGCCAGTTAAATGGACATTG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAATCACTTTCCTGTCTaGAGCCATGACCAGGTGTAC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGNHFPV*SHDQVY
Trigger: GTACACCTGGTCATGGCTCCAGACAGGAAAGTGATT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATCTCAATCCATTGGCTaGTATACCTGGGTCTCCACA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGSQSIG*YTWVST
Trigger: TGTGGAGACCCAGGTATACCAGCCAATGGATTGAGA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTTCCATTAGAGATCTaGGGAGGAGTTGAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLPLEI*GGVEQV
Trigger: TACCTGCTCAACTCCTCCCCAGATCTCTAATGGAAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATTTTCTTCTTCAGGATaGAGTCTAGGCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGFSSSG*SLGGHI
Trigger: AATGTGGCCGCCTAGACTTCATCCTGAAGAAGAAAA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGTGCCACTTGGTCCTTaGAGATTAGAGCCACATGTC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEVPLGP*RLEPHV
Trigger: GACATGTGGCTCTAATCTTCAAGGACCAAGTGGCAC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACCAATAGAGAAATCGTaGCCATATCGACGGCCATGG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEPIEKS*PYRRPW
Trigger: CCATGGCCGTCGATATGGTCACGATTTCTCTATTGG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGAAAAGTGTGGAAGTTaGACTGCACACCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCREKCGS*TAHLFH
Trigger: ATGGAAAAGGTGTGCAGTTCAACTTCCACACTTTTC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAACTCTAGCCAGAGCTaGTTTGATGTGCTGCTTAGT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGNSSQS*FDVLLS
Trigger: ACTAAGCAGCACATCAAATCAGCTCTGGCTAGAGTT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAACTCTAGCCAGAGCTaGTTTGATGTGCTGCTTAGT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVNSSQS*FDVLLS
Trigger: ACTAAGCAGCACATCAAATCAGCTCTGGCTAGAGTT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGTGCTGCCAGCAAAGTaGCCTTGGTCACTGATCTTA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEVLPAK*PWSLIL
Trigger: TAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCAC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATCGGAGTATATCATGTaGGGCTTCTGTATCGAAAGC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGSEYIM*GFCIES
Trigger: GCTTTCGATACAGAAGCCTCACATGATATACTCCGA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTATGTTGAGGGTGCTGTaGATTCCATCAGGAATAAGA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRMLRVL*IPSGIR
Trigger: TCTTATTCCTGATGGAATTCACAGCACCCTCAACAT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCGGTATTGTTGTTCCTaGATAACTTCCAAGTCTCGG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVRYCCS*ITSKSR
Trigger: CCGAGACTTGGAAGTTATTCAGGAACAACAATACCG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTTGATCACATTGGAATaGCACCACATCACCAACCAT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRLITLE*HHITNH
Trigger: ATGGTTGGTGATGTGGTGTCATTCCAATGTGATCAA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAACCCTGGAAGACACTaGTATCTGATAATATCGCCT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNPGRH*YLIISP
Trigger: AGGCGATATTATCAGATATCAGTGTCTTCCAGGGTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGCAGGACAGAGCACTTaGCACACTGGAGGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQAGQST*HTGGAP
Trigger: TGGGGCACCTCCAGTGTGTCAAGTGCTCTGTCCTGC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGGTCCATCATACACCTaGAGAACATCAAACTCCTTT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRGPSYT*RTSNSF
Trigger: AAAGGAGTTTGATGTTCTTCAGGTGTATGATGGACC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTTGCCCATTCACAATaGGTTCTGGAATTCCACAGT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLAHSQ*VLEFHS
Trigger: ACTGTGGAATTCCAGAACTCATTGTGAATGGGCAAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACTCTACATGTTGGCATaGCTCCACTCCATGTGCCAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPELYMLA*LHSMCH
Trigger: ATGGCACATGGAGTGGAGTCATGCCAACATGTAGAG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGCTTTTGTAGACCCCTaGAAGCAGCAACTCCATGTC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFAFVDP*KQQLHV
Trigger: GACATGGAGTTGCTGCTTTCAGGGGTCTACAAAAGC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTACTCTCCACAGGAGATaGCAACACAGCGAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFTLHRR*QHSEGS
Trigger: AGACCCCTCGCTGTGTTGTCATCTCCTGTGGAGAGT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160658.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGGATACAGTAACATCTaGAGGTGTGCTAGCAACATC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVGYSNI*RCASNI
Trigger: GATGTTGCTAGCACACCTGCAGATGTTACTGTATCC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGACTGTGGCACTTGTGTaGCATTGTAAGACCCAAGTA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVTVALV*HCKTQV
Trigger: TACTTGGGTCTTACAATGGCACACAAGTGCCACAGT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACGAACCAGTGAGTCGTaGCAGTGGTTGGGTAAAACT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPERTSES*QWLGKT
Trigger: AGTTTTACCCAACCACTGGCACGACTCACTGGTTCG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTCCCTCGTTATTTGTTaGAGATGCACCACATTCAGC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSLVIC*RCTTFS
Trigger: GCTGAATGTGGTGCATCTGCAACAAATAACGAGGGA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATCCCTCGTTATTTGTTaGAGATGCACCACATTCAGC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGSLVIC*RCTTFS
Trigger: GCTGAATGTGGTGCATCTGCAACAAATAACGAGGGA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATCCAAACTGTGGAATaGCTGGGTCTTCACAATGAG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGIQTVE*LGLHNE
Trigger: CTCATTGTGAAGACCCAGGCATTCCACAGTTTGGAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATCCAATCACAGTCCCTaGTGTGTGGGTATGGATGAG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPESNHSP*CVGMDE
Trigger: CTCATCCATACCCACACAGCAGGGACTGTGATTGGA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATTGGTGATAGCACTGTaGCTTCTGAACCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLVIAL*LLNLLN
Trigger: GTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTACTTCCAAGTCTCGGTaGATTGTTGTCTCCCCCATC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFTSKSR*IVVSPI
Trigger: GATGGGGGAGACAACAATGCACCGAGACTTGGAAGT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGCTTTATTGTCCATGTaGAATCTAAGCTGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGALLSM*NLSCWG
Trigger: ACCCCAGCAGCTTAGATTGCACATGGACAATAAAGC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGGTGCCCCATCCATCTaGAGTCGCTCTCCCAATCTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLGAPSI*SRSPNL
Trigger: CAGATTGGGAGAGCGACTGCAGATGGATGGGGCACC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACCTTTTCCACTGAGATaGTCCACGCACACATCTGCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEPFPLR*STHTSA
Trigger: TGCAGATGTGTGCGTGGAGCATCTCAGTGGAAAAGG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAATTCCACAAGAAATTaGTTGGCAGGCAGGGACGGG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPENSTRN*LAGRDG
Trigger: CCCGTCCCTGCCTGCCAAGCAATTTCTTGTGGAATT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAACAGTTCACCACTTTaGACACTGGTGGAGGATGGC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPENSSPL*TLVEDG
Trigger: GCCATCCTCCACCAGTGTGCAAAGTGGTGAACTGTT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACCTGGATTACCACATTaGACAGCTTTGCACTCTGGC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEPGLPH*TALHSG
Trigger: GCCAGAGTGCAAAGCTGTGCAATGTGGTAATCCAGG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCCTGGATTACCACATTaGACAGCTTTGCACTCTGGC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFPGLPH*TALHSG
Trigger: GCCAGAGTGCAAAGCTGTGCAATGTGGTAATCCAGG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACATTCCTACTACGTTTaGATGAGCAGGACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGHSYYV*MSRTFW
Trigger: CCAGAAAGTCCTGCTCATGCAAACGTAGTAGGAATG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCATTCCTACTACGTTTaGATGAGCAGGACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVHSYYV*MSRTFW
Trigger: CCAGAAAGTCCTGCTCATGCAAACGTAGTAGGAATG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATTCAGCTCTGCAAATTaGAACAGGGAAATCCCAGGA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGFSSAN*NREIPG
Trigger: TCCTGGGATTTCCCTGTTCCAATTTGCAGAGCTGAA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTCTCTTCCCATTTTCTaGTTCTCCAGGATCTGGACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSLPIF*FSRIWT
Trigger: TGTCCAGATCCTGGAGAACCAGAAAATGGGAAGAGA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTGTAAAGGTGCCACTTaGTCCTTGAAGATTAGAGCC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVCKGAT*SLKIRA
Trigger: GGCTCTAATCTTCAAGGACCAAGTGGCACCTTTACA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGCATTGCTGTCATACTaGAATGGAAAGTTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRALLSY*NGKLGD
Trigger: ATCTCCCAACTTTCCATTCCAGTATGACAGCAATGC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACTGTTACTAGTAAGATaGGAAGGCACCTCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPELLLVR*EGTSAP
Trigger: TGGGGCAGAGGTGCCTTCCCATCTTACTAGTAACAG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGCTGAACAGAAACTGTaGCACTTGTGTGCCATTGTA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVAEQKL*HLCAIV
Trigger: TACAATGGCACACAAGTGCCACAGTTTCTGTTCAGC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCCATATCGACGGCCATaGACAGGGATGCCAGGGTCC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYPYRRP*TGMPGS
Trigger: GGACCCTGGCATCCCTGTCCATGGCCGTCGATATGG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTGCACACCTTTTCCATaGGTGACATCAACTGTCCAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVCTPFP*VTSTVH
Trigger: ATGGACAGTTGATGTCACCCATGGAAAAGGTGTGCA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCTTATATCCAAACTGTaGAATGCCTGGGTCTTCACA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRLISKL*NAWVFT
Trigger: TGTGAAGACCCAGGCATTCCACAGTTTGGATATAAG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGAAAAGCCAAGTGCATaGTATTCGAGCTGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVEKPSA*YSSCSL
Trigger: TAGAGAGCAGCTCGAATACCATGCACTTGGCTTTTC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGAAAAGCCAAGTGCATaGTATTCGAGCTGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGEKPSA*YSSCSL
Trigger: TAGAGAGCAGCTCGAATACCATGCACTTGGCTTTTC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAGTGACTCTCCTGAATaGGATCCCGAGAGGGAAGAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPESDSPE*DPERED
Trigger: ATCTTCCCTCTCGGGATCCCATTCAGGAGAGTCACT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATGGCTCTGGAGCCATaGAGAATGTATCCTGGATTA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGMALEP*RMYPGL
Trigger: TAATCCAGGATACATTCTCCATGGCTCCAGAGCCAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTTTAATTCCACTGCTTaGGGTTTGTGGCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVFNSTA*GLWLRT
Trigger: TGTCCTGAGCCACAAACCCCAAGCAGTGGAATTAAA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATTTAATTCCACTGCTTaGGGTTTGTGGCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGFNSTA*GLWLRT
Trigger: TGTCCTGAGCCACAAACCCCAAGCAGTGGAATTAAA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCCAGTCGTAGTTCATTaGCAGGACAGAGCACTTGAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFPVVVH*QDRALD
Trigger: GTCAAGTGCTCTGTCCTGCCAATGAACTACGACTGG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGATGTATCCATGAGGTaGAGATTCTGGTGTGCTACA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGDVSMR*RFWCAT
Trigger: TGTAGCACACCAGAATCTCCACCTCATGGATACATC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGACCCGCTAGACATCTaGTTTCTGATCCACTCCACA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFDPLDI*FLIHST
Trigger: TGTGGAGTGGATCAGAAACCAGATGTCTAGCGGGTC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAACACTGTGCCTTTGTTaGTCCTTGCATAAGATACCC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGTLCLC*SLHKIP
Trigger: GGGTATCTTATGCAAGGACCAACAAAGGCACAGTGT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCACCACTTTGCACACTaGTGGAGGATGGCTCCACTG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFHHFAH*WRMAPL
Trigger: CAGTGGAGCCATCCTCCACCAGTGTGCAAAGTGGTG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTCTATGGTATAGCCTaGCTGGCACATGTAAGAAAC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLYGIA*LAHVRN
Trigger: GTTTCTTACATGTGCCAGCCAGGCTATACCATAGAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTGTCCCTTTTTGCAGTaGAACTGCACAACACTTCCT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVCPFLQ*NCTTLP
Trigger: AGGAAGTGTTGTGCAGTTCCACTGCAAAAAGGGACA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATGAGTGTGTACCCATaGGAGGGAAGGTCCATTCCT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEMSVYP*EGRSIP
Trigger: AGGAATGGACCTTCCCTCCCATGGGTACACACTCAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCTGTGTACTGTGTTTTaGGTGCAGTCCTTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRLCTVF*VQSFVC
Trigger: ACAAACAAAGGACTGCACCCAAAACACAGTACACAG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCATTGGTGTCATACATaGGGTTCTCAAAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVHWCHT*GSQRLL
Trigger: AAGCAGCCTTTGAGAACCCCATGTATGACACCAATG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTAAAGTTCGTCGGATaGGGATGTCCATCATACAAA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLKFVG*GCPSYK
Trigger: TTTGTATGATGGACATCCTCATCCGACGAACTTTAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGATCTGTAAATATCAGTaGGATTGTGTCCCCTGGTTC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVICKYQ*DCVPWF
Trigger: GAACCAGGGGACACAATCTCACTGATATTTACAGAT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGTTGAAGCCACGCCCTaGCATAGAGTGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLVEATP*HRVVSL
Trigger: CAAGCTGACCACTCTATGTCAGGGCGTGGCTTCAAC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGAAAAGTGTGGAAGTTaGACTGCACACCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVEKCGS*TAHLFH
Trigger: ATGGAAAAGGTGTGCAGTTCAACTTCCACACTTTTC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAACTACCGTTCTCTGTaGTCAGCAAATAGTCATGAT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRNYRSL*SANSHD
Trigger: ATCATGACTATTTGCTGATCACAGAGAACGGTAGTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGAAGTTCCGAACCAGTaGGTCGTGCCAGTGGTTGGG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQEVPNQ*VVPVVG
Trigger: CCCAACCACTGGCACGACTCACTGGTTCGGAACTTC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCACCGCCAAGACAGATaGTCTCAGAAGAACCCTCCA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFHRQDR*SQKNPP
Trigger: TGGAGGGTTCTTCTGAGATCATCTGTCTTGGCGGTG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAGTGACCTTGGTCACTaGTCTTATATCCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVSDLGH*SYIQTV
Trigger: CACAGTTTGGATATAAGATCAGTGACCAAGGTCACT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCTGATGATTCTCCCTTaGAACGGCCGCCACATTCAG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFLMILP*NGRHIQ
Trigger: CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATATCCAGGATCACACTaGAAGACAACAGTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEYPGSH*KTTVSP
Trigger: TGGGGACACTGTTGTCTTTCAGTGTGATCCTGGATA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGGTAACTTGCTGTCTTaGAAACTTCCAATCAATGGA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRGNLLS*KLPING
Trigger: TCCATTGATTGGAAGTTTTCAAGACAGCAAGTTACC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGAAATCCGGTGTAACTaGCAGATCCATCACTCCGAA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFEIRCN*QIHHSE
Trigger: TTCGGAGTGATGGATCTGTCAGTTACACCGGATTTC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACTAACTACTTGTACTTaGATTCCAGCTCCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPELTTCT*IPAPSG
Trigger: GCCAGAGGGAGCTGGAATTCAAGTACAAGTAGTTAG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGCTGTGTACTCAAGATaGAATCCTGCAGCAGAGACA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFAVYSR*NPAAET
Trigger: TGTCTCTGCTGCAGGATTTCATCTTGAGTACACAGC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATTGATCACATTGGAATaGCACCACATCACCAACCAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLITLE*HHITNH
Trigger: ATGGTTGGTGATGTGGTGTCATTCCAATGTGATCAA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTTGATCACATTGGAATaGCACCACATCACCAACCAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVLITLE*HHITNH
Trigger: ATGGTTGGTGATGTGGTGTCATTCCAATGTGATCAA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTTACAAGCTGGTTTCATaGGTTGTGCTAAACAGAGAA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRYKLVS*VVLNRE
Trigger: TTCTCTGTTTAGCACAACTCATGAAACCAGCTTGTA...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATGGGAAACATTCGAATaGAATGGTTTGACCCACAGT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGWETFE*NGLTHS
Trigger: ACTGTGGGTCAAACCATTTCATTCGAATGTTTCCCA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTGGGAAACATTCGAATaGAATGGTTTGACCCACAGT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVWETFE*NGLTHS
Trigger: ACTGTGGGTCAAACCATTTCATTCGAATGTTTCCCA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTTCCGGCTGACTCCATaGAGACATGTGAGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFFRLTP*RHVRAE
Trigger: CTCAGCTCTCACATGTCTTCATGGAGTCAGCCGGAA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGCAGGACAGAGCACTTaGCACACTGGAGGTGCCCCA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLAGQST*HTGGAP
Trigger: TGGGGCACCTCCAGTGTGTCAAGTGCTCTGTCCTGC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATAACCCTTTTCCACTaGGATGCTCCACGCACACAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEITLFH*DAPRTH
Trigger: ATGTGTGCGTGGAGCATCTCAGTGGAAAAGGGTTAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTATAAGCACTGGACTCTaGATATTTGGTCCATCATAC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRISTGL*IFGPSY
Trigger: GTATGATGGACCAAATATTCAGAGTCCAGTGCTTAT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCTGATGATGTATCCATaGGGTGGAGATTCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFLMMYP*GGDSGV
Trigger: CACACCAGAATCTCCACCTCATGGATACATCATCAG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGGTGAGCTCCTTGGATaGCAGTCTGTATCCATCATT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFGELLG*QSVSII
Trigger: AATGATGGATACAGACTGTCATCCAAGGAGCTCACC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGACTCCATGTCCCATCTaGCTGGCAGGTGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVTPCPI*LAGGCG
Trigger: ACCACAGCCACCTGCCAGTCAGATGGGACATGGAGT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAACTCCATGTCCCATCTaGCTGGCAGGTGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQTPCPI*LAGGCG
Trigger: ACCACAGCCACCTGCCAGTCAGATGGGACATGGAGT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCGAGGGGTCTTATTGTaGTTACTCCATGTCCCATCT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFRGVLL*LLHVPS
Trigger: AGATGGGACATGGAGTAATCACAATAAGACCCCTCG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACGAGGGGTCTTATTGTaGTTACTCCATGTCCCATCT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPERGVLL*LLHVPS
Trigger: AGATGGGACATGGAGTAATCACAATAAGACCCCTCG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCCAGGCAAGAATAGATaGCAGAACTGGAAAATGTTG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVPGKNR*QNWKML
Trigger: CAACATTTTCCAGTTCTGTCATCTATTCTTGCCTGG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACCAGGCAAGAATAGATaGCAGAACTGGAAAATGTTG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGPGKNR*QNWKML
Trigger: CAACATTTTCCAGTTCTGTCATCTATTCTTGCCTGG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCCAAATGTGTTGTTTTaGGATCCATGCCTTGGTACT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVPNVLF*DPCLGT
Trigger: AGTACCAAGGCATGGATCTCAAAACAACACATTTGG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCTGTCTGTAACAAAATaGAGTCTGAGCCAGTTTTTG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRLSVTK*SLSQFL
Trigger: CAAAAACTGGCTCAGACTGCATTTTGTTACAGACAG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATCATCACAGGAGAACTaGACAGTGGATCCAAGGCTA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPESSQEN*TVDPRL
Trigger: TAGCCTTGGATCCACTGTGCAGTTCTCCTGTGATGA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTGTGGAAGTTGAACTaGACACCTTTTCCATGGGTG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVWKLN*TPFPWV
Trigger: CACCCATGGAAAAGGTGTGCAGTTCAACTTCCACAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTATTTGTTGCAGATaGACCACATTCAGCCACACA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGVICCR*TTFSHT
Trigger: TGTGTGGCTGAATGTGGTGCATCTGCAACAAATAAC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGTTATTTGTTGCAGATaGACCACATTCAGCCACACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVVICCR*TTFSHT
Trigger: TGTGTGGCTGAATGTGGTGCATCTGCAACAAATAAC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATTCTCTCTCCAGTCATaGACTTCAGAAGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEFSLQS*TSEGCF
Trigger: GAAGCAGCCTTCTGAAGTGCATGACTGGAGAGAGAA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGCATGGTATTCGAGCTaGTCTCTATTCTTTCTGGTA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGAWYSS*SLFFLV
Trigger: TACCAGAAAGAATAGAGAGCAGCTCGAATACCATGC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAAGGAATCATTCCACTaGGCCAAAGAATTGGGTACT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGKESFH*AKELGT
Trigger: AGTACCCAATTCTTTGGCGCAGTGGAATGATTCCTT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAAGGAATCATTCCACTaGGCCAAAGAATTGGGTACT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVKESFH*AKELGT
Trigger: AGTACCCAATTCTTTGGCGCAGTGGAATGATTCCTT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATGTGCAATCTAAGCTaGTGGGGTAGTTTCCGGGAA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFMCNLS*WGSFRE
Trigger: TTCCCGGAAACTACCCCAGCAGCTTAGATTGCACAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATGTGCAATCTAAGCTaGTGGGGTAGTTTCCGGGAA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEMCNLS*WGSFRE
Trigger: TTCCCGGAAACTACCCCAGCAGCTTAGATTGCACAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAGAGAAGATGGTATTTaGGGACCACTAAGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEREDGI*GPLSRP
Trigger: TGGACGGCTTAGTGGTCCGCAAATACCATCTTCTCT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATTCTGTCAGGATTTCTaGATTAGGGACAGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEFCQDF*IRDRWW
Trigger: CCACCACCTGTCCCTAATGCAGAAATCCTGACAGAA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGGACAGCTCATATCCTaGAGAACAGATGTAGCTAAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGGQLIS*RTDVAN
Trigger: ATTAGCTACATCTGTTCTGCAGGATATGAGCTGTCC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATACAACTGTGAGGTATaGACTCAGGTTGAATTCCAC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGYNCEV*TQVEFH
Trigger: GTGGAATTCAACCTGAGTGCATACCTCACAGTTGTA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGTACTGTGTTTTGGGTaGAGTCCTTTGTTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRVLCFG*SPLFVK
Trigger: CTTTACAAACAAAGGACTGCACCCAAAACACAGTAC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAACTGGTGGTGGTAGGTaGAATCCTGTTAACCTTGTC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPETGGGR*NPVNLV
Trigger: GACAAGGTTAACAGGATTCCACCTACCACCACCAGT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTTTGGGTGGAACTCCTaGATTTCCACAGGAGCTACT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFFGWNS*ISTGAT
Trigger: AGTAGCTCCTGTGGAAATCCAGGAGTTCCACCCAAA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTGTTCAGCATTTCGTaGTCTTCTGCTTGTACTTTG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLFSIS*SSACTL
Trigger: CAAAGTACAAGCAGAAGACCACGAAATGCTGAACAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCTGTTCAGCATTTCGTaGTCTTCTGCTTGTACTTTG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVLFSIS*SSACTL
Trigger: CAAAGTACAAGCAGAAGACCACGAAATGCTGAACAG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTTACATACAGGCCTGTaGTCACTCCAAGCAGCAAAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFLHTGL*SLQAAN
Trigger: GTTTGCTGCTTGGAGTGACCACAGGCCTGTATGTAA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGCATTGCTGTCATACTaGAATGGAAAGTTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVALLSY*NGKLGD
Trigger: ATCTCCCAACTTTCCATTCCAGTATGACAGCAATGC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGTGGATCCGGCTTCCTaGATCAGAGATTATTGTCCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEVDPAS*IRDYCP
Trigger: TGGACAATAATCTCTGATCCAGGAAGCCGGATCCAC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCTTGGAGCTGAAAAGTaGCCACCACATGGAGCTCCA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFLGAEK*PPHGAP
Trigger: TGGAGCTCCATGTGGTGGCCACTTTTCAGCTCCAAG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATCACAGGTTGGGAGTaGATGACTCCACCAATGGTT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFITGWE*MTPPMV
Trigger: AACCATTGGTGGAGTCATCCACTCCCAACCTGTGAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAGTGAGTCGTGCCAGTaGTTGGGTAAAACTACCGTT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPESESCQ*LGKTTV
Trigger: AACGGTAGTTTTACCCAACCACTGGCACGACTCACT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGTTCAATGGGTAATTTaGAGAGAGGAGAATTCCCTC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVVQWVI*REENSL
Trigger: GAGGGAATTCTCCTCTCTCCAAATTACCCATTGAAC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAAGGTTATTATCATATaGAAAGGGATAGCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRKVIII*KGIARG
Trigger: TCCCCTGGCTATCCCTTTCCATATGATAATAACCTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTATTCATGGGGACTCCTaGATCACGACAGGCAGTTGC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFIHGDS*ITTGSC
Trigger: GCAACTGCCTGTCGTGATCCAGGAGTCCCCATGAAT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAGGTGCTATACAGACTaGTGGGCTGGGCTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLRCYTD*WAGLPE
Trigger: TTCTGGCAGCCCAGCCCACCAGTCTGTATAGCACCT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAAAACTTCCAATCAATaGACTATTACTGTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRKTSNQ*TITVWA
Trigger: GGCCCAGACAGTAATAGTCCATTGATTGGAAGTTTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTAATTCCAGCTCCCTCTaGCACTGTGATCTTCCAAAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFNSSSL*HCDLPN
Trigger: GTTTGGAAGATCACAGTGCCAGAGGGAGCTGGAATT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGCTAAACAGAGAAGATaGTATTTGCGGACCACTAAG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGAKQRR*YLRTTK
Trigger: CTTAGTGGTCCGCAAATACCATCTTCTCTGTTTAGC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCACCTTGGCAGCGGATaGTTCCAATTCCGGCTGACT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLHLGSG*FQFRLT
Trigger: AGTCAGCCGGAATTGGAACCATCCGCTGCCAAGGTG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGCAGTCTTGGAAGTTTaGATATTCATCAGGATAGCC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGAVLEV*IFIRIA
Trigger: GGCTATCCTGATGAATATCCAAACTTCCAAGACTGC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCATGTCCCATCTGACTaGCAGGTGGCTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYHVPSD*QVAVVS
Trigger: GCTCACCACAGCCACCTGCCAGTCAGATGGGACATG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTGTTCTTCCATAAATTaGACTACCAGGGTGACCACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVCSSIN*TTRVTT
Trigger: TGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGAAAGACTTTCCCATTaGCTGTTGTTCCTGGATTAC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGERLSH*LLFLDY
Trigger: GTAATCCAGGAACAACAGCCAATGGGAAAGTCTTTC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTTTCTATGGTGCCATTaGGTCCTTTTAAAGTTCCAC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVFLWCH*VLLKFH
Trigger: GTGGAACTTTAAAAGGACTCAATGGCACCATAGAAA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGTTGAAGCCACGCCCTaGCATAGAGTGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVVEATP*HRVVSL
Trigger: CAAGCTGACCACTCTATGTCAGGGCGTGGCTTCAAC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTACTCCACTTGGAGCTaGAAAGTGGCCACCACATGG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLYSTWS*KVATTW
Trigger: CCATGTGGTGGCCACTTTTCAGCTCCAAGTGGAGTA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAACTACCGTTCTCTGTaGTCAGCAAATAGTCATGAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGNYRSL*SANSHD
Trigger: ATCATGACTATTTGCTGATCACAGAGAACGGTAGTT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGAAGTTCCGAACCAGTaGGTCGTGCCAGTGGTTGGG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNEVPNQ*VVPVVG
Trigger: CCCAACCACTGGCACGACTCACTGGTTCGGAACTTC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCACCGACTCCAAAGCTaGATCCAACTCGGCTACCAT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLHRLQS*IQLGYH
Trigger: ATGGTAGCCGAGTTGGATTCAGCTTTGGAGTCGGTG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGATGAAACGTTCTGGCTaGAATATTGATGCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVMKRSG*NIDAFS
Trigger: GGAAAAGGCATCAATATTTCAGCCAGAACGTTTCAT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACCTGGGTCTTCACAATaGGAAAGTTCAAAACTGGTG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEPGSSQ*ESSKLV
Trigger: CACCAGTTTTGAACTTTCTCATTGTGAAGACCCAGG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGTGCTGCCAGCAAAGTaGCCTTGGTCACTGATCTTA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFVLPAK*PWSLIL
Trigger: TAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCAC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGATTCTTTCTTGTCCTTaGAGCTCATATCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVILSCP*SSYPGS
Trigger: TGATCCTGGATATGAGCTTCAAGGACAAGAAAGAAT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGGTAACTTGCTGTCTTaGAAACTTCCAATCAATGGA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVGNLLS*KLPING
Trigger: TCCATTGATTGGAAGTTTTCAAGACAGCAAGTTACC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGATACAAGTGAGTGTTaGATAACCTTGGAGAACATA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRDTSEC*ITLENI
Trigger: TATGTTCTCCAAGGTTATTCAACACTCACTTGTATC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACGGTATTGTTGTTCCTaGATAACTTCCAAGTCTCGG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPERYCCS*ITSKSR
Trigger: CCGAGACTTGGAAGTTATTCAGGAACAACAATACCG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTTCCGGCTGACTCCATaGAGACATGTGAGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLFRLTP*RHVRAE
Trigger: CTCAGCTCTCACATGTCTTCATGGAGTCAGCCGGAA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGTATTGCCACTGAATTaGCCAATTTGGGGTGAATTT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVVLPLN*PIWGEF
Trigger: AAATTCACCCCAAATTGGTCAATTCAGTGGCAATAC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGATAAGCACTGGACTCTaGATATTTGGTCCATCATAC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVISTGL*IFGPSY
Trigger: GTATGATGGACCAAATATTCAGAGTCCAGTGCTTAT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAATGATAGCCATAGGATaGTTTTCTGCAAACAGCACT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGMIAIG*FSANST
Trigger: AGTGCTGTTTGCAGAAAATCATCCTATGGCTATCAT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCATTGTCCATTTGGCTaGCATATCAAAACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVHCPFG*HIKTEE
Trigger: CTCTTCAGTTTTGATATGTCAGCCAAATGGACAATG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGCTGTTTCCTTCCTTTaGAATTATAAGAGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGAVSFL*NYKSLS
Trigger: GGAAAGGCTCTTATAATTTCAAAGGAAGGAAACAGC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGCTGTTTCCTTCCTTTaGAATTATAAGAGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVAVSFL*NYKSLS
Trigger: GGAAAGGCTCTTATAATTTCAAAGGAAGGAAACAGC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTGTCTGTAACAAAATaGAGTCTGAGCCAGTTTTTG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLSVTK*SLSQFL
Trigger: CAAAAACTGGCTCAGACTGCATTTTGTTACAGACAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTATACACATTGTGCATTaGTGTCATACTGGAATGGAA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRIHIVH*CHTGME
Trigger: TTCCATTCCAGTATGACAGCAATGCACAATGTGTAT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTACATTTGGCTTCTCATaGTCACTATCAGGTCTGGCA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFTFGFS*SLSGLA
Trigger: TGCCAGACCTGATAGTGAGCATGAGAAGCCAAATGT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAACTGTGGCACTTGTGTaGCATTGTAAGACCCAAGTA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPETVALV*HCKTQV
Trigger: TACTTGGGTCTTACAATGGCACACAAGTGCCACAGT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCGAACCAGTGAGTCGTaGCAGTGGTTGGGTAAAACT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFRTSES*QWLGKT
Trigger: AGTTTTACCCAACCACTGGCACGACTCACTGGTTCG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAGAGCTGATTTGATGTaGTGCTTAGTGTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPERADLM*CLVSVL
Trigger: GAGGACTGACACTAAGCAGCACATCAAATCAGCTCT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGCTTCGATCATCCACATaGAGCGAAGGTTATTATCAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVLRSST*SEGYYH
Trigger: ATGATAATAACCTTCGCTGCATGTGGATGATCGAAG...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATTGGTGATAGCACTGTaGCTTCTGAACCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPELVIAL*LLNLLN
Trigger: GTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCTCAAGATGAAATCCTaGAGCAGAGACACTGATGTC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFLKMKS*SRDTDV
Trigger: GACATCAGTGTCTCTGCTGCAGGATTTCATCTTGAG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAATGGTACCATTCATTaGAGTTATATTCCCGCCACA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVNGTIH*SYIPAT
Trigger: TGTGGCGGGAATATAACTGCAATGAATGGTACCATT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGCCTTTGTTGGTCCTTaGATAAGATACCCAATATTG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVAFVGP*IRYPIL
Trigger: CAATATTGGGTATCTTATGCAAGGACCAACAAAGGC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGAGAACGCTTTCCTGTaGAGGAATAGTGAACTGTTG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFENAFL*RNSELL
Trigger: CAACAGTTCACTATTCCTGCACAGGAAAGCGTTCTC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCACATTGCACAGCTTTaGACTCTGGCTGTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFHIAQL*TLAVFQ
Trigger: CTGGAAGACAGCCAGAGTGCAAAGCTGTGCAATGTG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACAATGGCCACAGAACTaGTATTTGTACCATGAGGCT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEQWPQN*YLYHEA
Trigger: AGCCTCATGGTACAAATAGCAGTTCTGTGGCCATTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTGAGAACACAGATTTaGTACTTGTCACTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVRTQI*YLSLVV
Trigger: CACCACCAGTGACAAGTACCAAATCTGTGTTCTCAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATTCAGCTCTGCAAATTaGAACAGGGAAATCCCAGGA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEFSSAN*NREIPG
Trigger: TCCTGGGATTTCCCTGTTCCAATTTGCAGAGCTGAA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGTTGCTGATAATTGGTaGTGGTATATTCATTCCAGA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRVADNW*WYIHSR
Trigger: TCTGGAATGAATATACCACCACCAATTATCAGCAAC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTGTAAAGGTGCCACTTaGTCCTTGAAGATTAGAGCC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFCKGAT*SLKIRA
Trigger: GGCTCTAATCTTCAAGGACCAAGTGGCACCTTTACA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCTGTTACTAGTAAGATaGGAAGGCACCTCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFLLLVR*EGTSAP
Trigger: TGGGGCAGAGGTGCCTTCCCATCTTACTAGTAACAG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCTTGGAGCTGAAAAGTaGCCACCACATGGAGCTCCA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLGAEK*PPHGAP
Trigger: TGGAGCTCCATGTGGTGGCCACTTTTCAGCTCCAAG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAGAAGGGGCTCTTCATaGCTCAGTCGGTATCCTGGA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLRRGSS*LSRYPG
Trigger: TCCAGGATACCGACTGAGCCATGAAGAGCCCCTTCT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTCCGTGTCCCATTCATaGGGACTCCTGGATCACGAC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYSVSHS*GLLDHD
Trigger: GTCGTGATCCAGGAGTCCCCATGAATGGGACACGGA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAGGTGCTATACAGACTaGTGGGCTGGGCTGCCAGAA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYRCYTD*WAGLPE
Trigger: TTCTGGCAGCCCAGCCCACCAGTCTGTATAGCACCT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGTGGACTATTACTGTCTaGGCCATCATATATGTAGAG +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVWTITV*AIIYVE
Trigger: CTCTACATATATGATGGCCCAGACAGTAATAGTCCA...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGAAAAGCCAAGTGCATaGTATTCGAGCTGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFEKPSA*YSSCSL
Trigger: TAGAGAGCAGCTCGAATACCATGCACTTGGCTTTTC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAACCTCAACAACATCGTaGAGTGATGTCTGGAAAAAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGTSTTS*SDVWKN
Trigger: ATTTTTCCAGACATCACTCCACGATGTTGTTGAGGT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATGGCTCTGGAGCCATaGAGAATGTATCCTGGATTA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFMALEP*RMYPGL
Trigger: TAATCCAGGATACATTCTCCATGGCTCCAGAGCCAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCACCTTGGCAGCGGATaGTTCCAATTCCGGCTGACT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVHLGSG*FQFRLT
Trigger: AGTCAGCCGGAATTGGAACCATCCGCTGCCAAGGTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAGCCAAAAGCAGTCTTaGAAGTTTGGATATTCATCA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRSQKQS*KFGYSS
Trigger: TGATGAATATCCAAACTTCCAAGACTGCTTTTGGCT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTGCATTAGGGACAGGTaGTGGAGGTTGGCACACTCT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLCIRDR*WRLAHS
Trigger: AGAGTGTGCCAACCTCCACCACCTGTCCCTAATGCA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAACCAGTGTAAACCCTaGAAGACACTGATATCTGAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGNQCKP*KTLISD
Trigger: ATCAGATATCAGTGTCTTCCAGGGTTTACACTGGTT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGAGCACTTGACACACTaGAGGTGCCCCATCCATCTG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVEHLTH*RCPIHL
Trigger: CAGATGGATGGGGCACCTCCAGTGTGTCAAGTGCTC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGAGCACTTGACACACTaGAGGTGCCCCATCCATCTG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQEHLTH*RCPIHL
Trigger: CAGATGGATGGGGCACCTCCAGTGTGTCAAGTGCTC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATTCACAATGAGTTCTaGAATTCCACAGTGACCCGC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFIHNEF*NSTVTR
Trigger: GCGGGTCACTGTGGAATTCCAGAACTCATTGTGAAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATTCACAATGAGTTCTaGAATTCCACAGTGACCCGC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEIHNEF*NSTVTR
Trigger: GCGGGTCACTGTGGAATTCCAGAACTCATTGTGAAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAACACTGTGCCTTTGTTaGTCCTTGCATAAGATACCC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPETLCLC*SLHKIP
Trigger: GGGTATCTTATGCAAGGACCAACAAAGGCACAGTGT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCAGTCCAACTGCCATTaGATAAACATGTTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRQSNCH*INMFFL
Trigger: AAGAAAGAACATGTTTATCCAATGGCAGTTGGACTG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATTGGCTGGTATACCTaGGTCTCCACAACTGATGAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEIGWYT*VSTTDD
Trigger: ATCATCAGTTGTGGAGACCCAGGTATACCAGCCAAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCTCTATGGTATAGCCTaGCTGGCACATGTAAGAAAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFLYGIA*LAHVRN
Trigger: GTTTCTTACATGTGCCAGCCAGGCTATACCATAGAG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAACAGCTCTACATGTTaGCATGACTCCACTCCATGT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPENSSTC*HDSTPC
Trigger: ACATGGAGTGGAGTCATGCCAACATGTAGAGCTGTT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTAACAGCTCTACATGTTaGCATGACTCCACTCCATGT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFNSSTC*HDSTPC
Trigger: ACATGGAGTGGAGTCATGCCAACATGTAGAGCTGTT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTTGAGATCCATGCCTTaGTACTCCAGGGTTTTCACA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFLRSMP*YSRVFT
Trigger: TGTGAAAACCCTGGAGTACCAAGGCATGGATCTCAA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCATTGGTGTCATACATaGGGTTCTCAAAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHWCHT*GSQRLL
Trigger: AAGCAGCCTTTGAGAACCCCATGTATGACACCAATG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTAAACTGTGTTCAAGTTaGGGTCGAATCGTACTGCCT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFKLCSS*GRIVLP
Trigger: AGGCAGTACGATTCGACCCCAACTTGAACACAGTTT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGCTATGCAGGTAAGTTaGGGATGGCCATCAAGGATA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFAMQVS*GWPSRI
Trigger: TATCCTTGATGGCCATCCTCAACTTACCTGCATAGC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAACCCGGGCTGGATATaGTGCCACTGGAACCTCTCA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNNPGWI*CHWNLS
Trigger: TGAGAGGTTCCAGTGGCATCATATCCAGCCCGGGTT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACACCAATGGAGGCAGTaGGGGTCAATGGAGAAGAAC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQHQWRQ*GSMEKN
Trigger: GTTCTTCTCCATTGACCCTCACTGCCTCCATTGGTG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACACCAGTGGCAGTCCTaGTATGCTCCTCTAACTCAC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQHQWQS*YAPLTH
Trigger: GTGAGTTAGAGGAGCATATCAGGACTGCCACTGGTG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCACCAGTGGCAGTCCTaGTATGCTCCTCTAACTCAC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVHQWQS*YAPLTH
Trigger: GTGAGTTAGAGGAGCATATCAGGACTGCCACTGGTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGACTTCAGCTATCCTTTaGCAAGTAATGCTTTTTGCT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVTSAIL*QVMLFA
Trigger: AGCAAAAAGCATTACTTGTCAAAGGATAGCTGAAGT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAACACTTTCATCTGTTTaGAGATGGAGCCACATTTGG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPETLSSV*RWSHIW
Trigger: CCAAATGTGGCTCCATCTTCAAACAGATGAAAGTGT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGTTGAAGCCACGCCCTaGCATAGAGTGGTCAGCTTG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLVEATP*HRVVSL
Trigger: CAAGCTGACCACTCTATGTCAGGGCGTGGCTTCAAC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCCAATAGAGAAATCGTaGCCATATCGACGGCCATGG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLPIEKS*PYRRPW
Trigger: CCATGGCCGTCGATATGGTCACGATTTCTCTATTGG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGAAAAGTGTGGAAGTTaGACTGCACACCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFEKCGS*TAHLFH
Trigger: ATGGAAAAGGTGTGCAGTTCAACTTCCACACTTTTC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCACCGACTCCAAAGCTaGATCCAACTCGGCTACCAT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVHRLQS*IQLGYH
Trigger: ATGGTAGCCGAGTTGGATTCAGCTTTGGAGTCGGTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCACCGCCAAGACAGATaGTCTCAGAAGAACCCTCCA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYHRQDR*SQKNPP
Trigger: TGGAGGGTTCTTCTGAGATCATCTGTCTTGGCGGTG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTTCTGGCTGAAATATTaGTGCCTTTTCCTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFFWLKY*CLFLLG
Trigger: TCCAAGCAGGAAAAGGCATCAATATTTCAGCCAGAA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATTCTGGCTGAAATATTaGTGCCTTTTCCTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEFWLKY*CLFLLG
Trigger: TCCAAGCAGGAAAAGGCATCAATATTTCAGCCAGAA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATGTTGAGGGTGCTGTaGATTCCATCAGGAATAAGA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFMLRVL*IPSGIR
Trigger: TCTTATTCCTGATGGAATTCACAGCACCCTCAACAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACTGTGTGGGTATGGATaGGGGAAGTTTGGCGAAAGG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQLCGYG*GKFGER
Trigger: CCTTTCGCCAAACTTCCCTCATCCATACCCACACAG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTAATAGGTGACTGTTaGCCCCAATTTATAATCCAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGVIGDC*PQFIIH
Trigger: ATGGATTATAAATTGGGGTCAACAGTCACCTATTAC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGATACAAGTGAGTGTTaGATAACCTTGGAGAACATA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVDTSEC*ITLENI
Trigger: TATGTTCTCCAAGGTTATTCAACACTCACTTGTATC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAACAACATCGTGGAGTaGTGTCTGGAAAAATACAAA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVNNIVE*CLEKYK
Trigger: TTTGTATTTTTCCAGACATCACTCCACGATGTTGTT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAACAACATCGTGGAGTaGTGTCTGGAAAAATACAAA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGNNIVE*CLEKYK
Trigger: TTTGTATTTTTCCAGACATCACTCCACGATGTTGTT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAGAGGAGACTGCTaGGTTGGCCCATCAAACACC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQNRGDC*VGPSNT
Trigger: GGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTGGGAAACATTCGAATaGAATGGTTTGACCCACAGT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFWETFE*NGLTHS
Trigger: ACTGTGGGTCAAACCATTTCATTCGAATGTTTCCCA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTTCCGGCTGACTCCATaGAGACATGTGAGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVFRLTP*RHVRAE
Trigger: CTCAGCTCTCACATGTCTTCATGGAGTCAGCCGGAA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATTCCGGCTGACTCCATaGAGACATGTGAGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQFRLTP*RHVRAE
Trigger: CTCAGCTCTCACATGTCTTCATGGAGTCAGCCGGAA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTATAACCCTTTTCCACTaGGATGCTCCACGCACACAT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFITLFH*DAPRTH
Trigger: ATGTGTGCGTGGAGCATCTCAGTGGAAAAGGGTTAT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACAATGTATCTTATCCTaGAGCCTTTCTTGTTATTGC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGQCILS*SLSCYC
Trigger: GCAATAACAAGAAAGGCTTCAGGATAAGATACATTG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCTGATGATGTATCCATaGGGTGGAGATTCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFLMMYP*GGDSGV
Trigger: CACACCAGAATCTCCACCTCATGGATACATCATCAG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGGTGAGCTCCTTGGATaGCAGTCTGTATCCATCATT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFGELLG*QSVSII
Trigger: AATGATGGATACAGACTGTCATCCAAGGAGCTCACC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACACTGCCTGTTAGCCTaGCACTGTGCCTTTGTTGGT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQHCLLA*HCAFVG
Trigger: ACCAACAAAGGCACAGTGTCAGGCTAACAGGCAGTG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAGAATTGCAGCTGAATaGAACCTCAGACTGATATAT +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVRIAAE*NLRLIY
Trigger: ATATATCAGTCTGAGGTTTCATTCAGCTGCAATTCT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTGTGTCCCCTGGTTCTaGTACAATGGTCCATGTGCA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLCVPWF*YNGPCA
Trigger: TGCACATGGACCATTGTAGCAGAACCAGGGGACACA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCACCCATACACATTGTaGATTGCTGTCATACTGGAA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHPYTL*IAVILE
Trigger: TTCCAGTATGACAGCAATGCACAATGTGTATGGGTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACACCCATACACATTGTaGATTGCTGTCATACTGGAA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEHPYTL*IAVILE
Trigger: TTCCAGTATGACAGCAATGCACAATGTGTATGGGTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTGCACTTCAGAAGGCTaGTTCCATGGAGAGTATAGC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFCTSEG*FHGEYS
Trigger: GCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTGATTTTCTACCTGAATaGAGGTTATTCTTTCTTGTC +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRDFLPE*RLFFLV
Trigger: GACAAGAAAGAATAACCTGCATTCAGGTAGAAAATC...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCTCCGAAAAGCCAAGTaGATGGTATTCGAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLRKAK*MVFELL
Trigger: GAGCAGCTCGAATACCATGCACTTGGCTTTTCGGAG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGGAATCATTCCACTaGGCCAAAGAATTGGGTACT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEKESFH*AKELGT
Trigger: AGTACCCAATTCTTTGGCGCAGTGGAATGATTCCTT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTACTTCCAAGTCTCGGTaGATTGTTGTCTCCCCCATC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLTSKSR*IVVSPI
Trigger: GATGGGGGAGACAACAATGCACCGAGACTTGGAAGT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGGTACTATTGAGAAGATaGGGTATTGTTGTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVVLLRR*GIVVPE
Trigger: TTCAGGAACAACAATACCGCATCTTCTCAATAGTAC...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAGAATCCAAACCAATTaGTGTGTACTCAAGATGAAA +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRRIQTN*CVLKMK
Trigger: TTTCATCTTGAGTACACAGCAATTGGTTTGGATTCT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAACAGTTCACCACTTTaGACACTGGTGGAGGATGGC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLNSSPL*TLVEDG
Trigger: GCCATCCTCCACCAGTGTGCAAAGTGGTGAACTGTT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGTCTTCCAGTCCAACTaGCATTGGATAAACATGTTC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEVFQSN*HWINMF
Trigger: GAACATGTTTATCCAATGGCAGTTGGACTGGAAGAC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCACATTGCACAGCTTTaGACTCTGGCTGTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLHIAQL*TLAVFQ
Trigger: CTGGAAGACAGCCAGAGTGCAAAGCTGTGCAATGTG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCCTGGATTACCACATTaGACAGCTTTGCACTCTGGC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLPGLPH*TALHSG
Trigger: GCCAGAGTGCAAAGCTGTGCAATGTGGTAATCCAGG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGGACAGCTCATATCCTaGAGAACAGATGTAGCTAAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEGQLIS*RTDVAN
Trigger: ATTAGCTACATCTGTTCTGCAGGATATGAGCTGTCC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCACTCCAGGTACCATTaGCTACACAGGTCAGAACGG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVHSRYH*LHRSER
Trigger: CCGTTCTGACCTGTGTAGGCAATGGTACCTGGAGTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCACTCCAGGTACCATTaGCTACACAGGTCAGAACGG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYHSRYH*LHRSER
Trigger: CCGTTCTGACCTGTGTAGGCAATGGTACCTGGAGTG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTTACAACTGTGAGGTATaGACTCAGGTTGAATTCCAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFYNCEV*TQVEFH
Trigger: GTGGAATTCAACCTGAGTGCATACCTCACAGTTGTA...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTTTGGGTGGAACTCCTaGATTTCCACAGGAGCTACT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFFGWNS*ISTGAT
Trigger: AGTAGCTCCTGTGGAAATCCAGGAGTTCCACCCAAA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCTGGTTCTGCTACAATaGTCCATGTGCAGTCTGCAT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFLVLLQ*SMCSLH
Trigger: ATGCAGACTGCACATGGACCATTGTAGCAGAACCAG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTAAGGAAAGATACAGATaGGTATATTTGCAGACCATT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRKERYR*VYLQTI
Trigger: AATGGTCTGCAAATATACCCATCTGTATCTTTCCTT...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGGGTATTCCAGGATCTaGGCATTCATTATGTCCAAA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEGYSRI*AFIMSK
Trigger: TTTGGACATAATGAATGCCCAGATCCTGGAATACCC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCTTGGAGCTGAAAAGTaGCCACCACATGGAGCTCCA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVLGAEK*PPHGAP
Trigger: TGGAGCTCCATGTGGTGGCCACTTTTCAGCTCCAAG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAGAAGGGGCTCTTCATaGCTCAGTCGGTATCCTGGA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYRRGSS*LSRYPG
Trigger: TCCAGGATACCGACTGAGCCATGAAGAGCCCCTTCT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTTCAATGGGTAATTTaGAGAGAGGAGAATTCCCTC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVQWVI*REENSL
Trigger: GAGGGAATTCTCCTCTCTCCAAATTACCCATTGAAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACTTATATCCAAACTGTaGAATGCCTGGGTCTTCACA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPELISKL*NAWVFT
Trigger: TGTGAAGACCCAGGCATTCCACAGTTTGGATATAAG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATGCTATACAGACTGGTaGGCTGGGCTGCCAGAAGTA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQCYTDW*AGLPEV
Trigger: TACTTCTGGCAGCCCAGCCCACCAGTCTGTATAGCA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTGCTATACAGACTGGTaGGCTGGGCTGCCAGAAGTA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYCYTDW*AGLPEV
Trigger: TACTTCTGGCAGCCCAGCCCACCAGTCTGTATAGCA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAGTGACTCTCCTGAATaGGATCCCGAGAGGGAAGAT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLSDSPE*DPERED
Trigger: ATCTTCCCTCTCGGGATCCCATTCAGGAGAGTCACT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCCTTCTTCCAAATCTTaGCTCGGGCACAGAACTGCA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLPSSKS*LGHRTA
Trigger: TGCAGTTCTGTGCCCGAGCCAAGATTTGGAAGAAGG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTAAACCCATTTCGAAATaGGCGAGGATCAGGACAGCT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFKPISK*ARIRTA
Trigger: AGCTGTCCTGATCCTCGCCCATTTCGAAATGGGTTT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGCAGTCTTGGAAGTTTaGATATTCATCAGGATAGCC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEAVLEV*IFIRIA
Trigger: GGCTATCCTGATGAATATCCAAACTTCCAAGACTGC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAATTAGGGACAGGTGGTaGAGGTTGGCACACTCTCAG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQIRDRW*RLAHSQ
Trigger: CTGAGAGTGTGCCAACCTCCACCACCTGTCCCTAAT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATTAGGGACAGGTGGTaGAGGTTGGCACACTCTCAG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVIRDRW*RLAHSQ
Trigger: CTGAGAGTGTGCCAACCTCCACCACCTGTCCCTAAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTGCATTAGGGACAGGTaGTGGAGGTTGGCACACTCT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYCIRDR*WRLAHS
Trigger: AGAGTGTGCCAACCTCCACCACCTGTCCCTAATGCA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGATTCCTCCATTAGTTaGGGCTTTTGGAATTCCACA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFDSSIS*GFWNST
Trigger: TGTGGAATTCCAAAAGCCCCAACTAATGGAGGAATC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAACAGGCACACAGGATaGGAGCTGACCAGACCAGTT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVNRHTG*ELTRPV
Trigger: AACTGGTCTGGTCAGCTCCCATCCTGTGTGCCTGTT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAACAGGCACACAGGATaGGAGCTGACCAGACCAGTT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYNRHTG*ELTRPV
Trigger: AACTGGTCTGGTCAGCTCCCATCCTGTGTGCCTGTT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCAATGTCCATTTAACTaGCAAGTCCTGGATGCCTGG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFQCPFN*QVLDAW
Trigger: CCAGGCATCCAGGACTTGCCAGTTAAATGGACATTG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGAAAGACTTTCCCATTaGCTGTTGTTCCTGGATTAC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEERLSH*LLFLDY
Trigger: GTAATCCAGGAACAACAGCCAATGGGAAAGTCTTTC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGAAAGACTTTCCCATTaGCTGTTGTTCCTGGATTAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFERLSH*LLFLDY
Trigger: GTAATCCAGGAACAACAGCCAATGGGAAAGTCTTTC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATGAGTGTGTACCCATaGGAGGGAAGGTCCATTCCT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLMSVYP*EGRSIP
Trigger: AGGAATGGACCTTCCCTCCCATGGGTACACACTCAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGACTTTCACTAATATTTTaGAACCAGCTTCACAGACAG +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGLSLIF*NQLHRQ
Trigger: CTGTCTGTGAAGCTGGTTCCAAAATATTAGTGAAAG...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTGTTCAGTGTGTCGATTTCCAGGATTCTGAAGAAGGCAACGTGTTGCCGTCACAGAAGCATGTGCTaGCACTTTAATAAGATATAT +
Preference number: 4 (lower is better)
Translates to: ALFSVSISRILKKATCCRHRSMC*HFNKIY
Trigger: ATATATCTTATTAAAGTGCCAGCACATGCTTCTGTG...ACGGCAACACGTTGCCTTCTTCAGAATCCTGGAAATCGACACACTGAACAGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCACCAATGGAGGCAGTaGGGGTCAATGGAGAAGAAC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLHQWRQ*GSMEKN
Trigger: GTTCTTCTCCATTGACCCTCACTGCCTCCATTGGTG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTTCCAGTTAGCACCTaGAGCACAGTCCTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLPVST*STVLGS
Trigger: AGACCCAAGGACTGTGCTTCAGGTGCTAACTGGAAG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCCAGATCAAAGTCATTaGAGGAAAGGTGGATCCGGC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYPDQSH*RKGGSG
Trigger: GCCGGATCCACCTTTCCTTCAATGACTTTGATCTGG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCAAAGCGACGAGCATTaGTGGGTATTCCAGGATCTG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVQSDEH*WVFQDL
Trigger: CAGATCCTGGAATACCCATCAATGCTCGTCGCTTTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACCAATAGAGAAATCGTaGCCATATCGACGGCCATGG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQPIEKS*PYRRPW
Trigger: CCATGGCCGTCGATATGGTCACGATTTCTCTATTGG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTAACTACCGTTCTCTGTaGTCAGCAAATAGTCATGAT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFNYRSL*SANSHD
Trigger: ATCATGACTATTTGCTGATCACAGAGAACGGTAGTT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAGCGCAATTGAGCCCTaGAGTTTCCATAAAGGCCAG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVSAIEP*SFHKGQ
Trigger: CTGGCCTTTATGGAAACTTCAGGGCTCAATTGCGCT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACACTCGGCTACCATATTaGGGAATCCCAGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYTRLPY*GIPGSS
Trigger: TGAAGACCCTGGGATTCCTCAATATGGTAGCCGAGT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAACTCGGCTACCATATTaGGGAATCCCAGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQTRLPY*GIPGSS
Trigger: TGAAGACCCTGGGATTCCTCAATATGGTAGCCGAGT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCACCGACTCCAAAGCTaGATCCAACTCGGCTACCAT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLHRLQS*IQLGYH
Trigger: ATGGTAGCCGAGTTGGATTCAGCTTTGGAGTCGGTG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGTGCTGCCAGCAAAGTaGCCTTGGTCACTGATCTTA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYVLPAK*PWSLIL
Trigger: TAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCAC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGATTGCATCCATAGATaGTGGTGCTGCCAGCAAAGT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLDCIHR*WCCQQS
Trigger: ACTTTGCTGGCAGCACCATCATCTATGGATGCAATC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCTGATGATTCTCCCTTaGAACGGCCGCCACATTCAG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLMILP*NGRHIQ
Trigger: CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGATGATTCTCCCTTaGAACGGCCGCCACATTCAG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLMILP*NGRHIQ
Trigger: CTGAATGTGGCGGCCGTTTCAAGGGAGAATCATCAG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATTCTTTCTTGTCCTTaGAGCTCATATCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEILSCP*SSYPGS
Trigger: TGATCCTGGATATGAGCTTCAAGGACAAGAAAGAAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACATCACAGTAATAGGTaGCTGTTGACCCCAATTTAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEHHSNR*LLTPIY
Trigger: ATAAATTGGGGTCAACAGTCACCTATTACTGTGATG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAATCGAATTGTGATCTaGTTACCTGAACTCAGTGGA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPENRIVI*LPELSG
Trigger: TCCACTGAGTTCAGGTAATCAGATCACAATTCGATT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGCTGTGTACTCAAGATaGAATCCTGCAGCAGAGACA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLAVYSR*NPAAET
Trigger: TGTCTCTGCTGCAGGATTTCATCTTGAGTACACAGC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCACACCACTGAAGTCTaGCATTGCACCTCCACACTG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLHTTEV*HCTSTL
Trigger: CAGTGTGGAGGTGCAATGTCAGACTTCAGTGGTGTG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATACAAGCTGGTTTCATaGGTTGTGCTAAACAGAGAA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEYKLVS*VVLNRE
Trigger: TTCTCTGTTTAGCACAACTCATGAAACCAGCTTGTA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTATTGCCACTGAATTaGCCAATTTGGGGTGAATTT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVLPLN*PIWGEF
Trigger: AAATTCACCCCAAATTGGTCAATTCAGTGGCAATAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATAAGCACTGGACTCTaGATATTTGGTCCATCATAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFISTGL*IFGPSY
Trigger: GTATGATGGACCAAATATTCAGAGTCCAGTGCTTAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCTTGCCCATTCACAATaGGTTCTGGAATTCCACAGT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFLAHSQ*VLEFHS
Trigger: ACTGTGGAATTCCAGAACTCATTGTGAATGGGCAAG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCACTGCCTGTTAGCCTaGCACTGTGCCTTTGTTGGT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLHCLLA*HCAFVG
Trigger: ACCAACAAAGGCACAGTGTCAGGCTAACAGGCAGTG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCATTGTCCATTTGGCTaGCATATCAAAACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHCPFG*HIKTEE
Trigger: CTCTTCAGTTTTGATATGTCAGCCAAATGGACAATG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTCCACAGTCAATCATaGTACATTCTGGTAAAGGTT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVHSQS*YILVKV
Trigger: AACCTTTACCAGAATGTATCATGATTGACTGTGGAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGTCCACAGTCAATCATaGTACATTCTGGTAAAGGTT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEVHSQS*YILVKV
Trigger: AACCTTTACCAGAATGTATCATGATTGACTGTGGAC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGGAATAGTGAACTGTTaGCCCAAAAGTATACTTCTC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEGIVNC*PKSILL
Trigger: GAGAAGTATACTTTTGGGTCAACAGTTCACTATTCC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGGAATAGTGAACTGTTaGCCCAAAAGTATACTTCTC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFGIVNC*PKSILL
Trigger: GAGAAGTATACTTTTGGGTCAACAGTTCACTATTCC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGATCTGGGGAGGAGTTaGGCAGGTAACAGCTCTACA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLDLGRS*AGNSST
Trigger: TGTAGAGCTGTTACCTGCTCAACTCCTCCCCAGATC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGCTTTTGTAGACCCCTaGAAGCAGCAACTCCATGTC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVAFVDP*KQQLHV
Trigger: GACATGGAGTTGCTGCTTTCAGGGGTCTACAAAAGC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGCATCTTCAGCTCTaGAAATTGGAACAGGGAAAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEKHLQL*KLEQGN
Trigger: ATTTCCCTGTTCCAATTTGCAGAGCTGAAGATGCTT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATGTGTCCCCTGGTTCTaGTACAATGGTCCATGTGCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQCVPWF*YNGPCA
Trigger: TGCACATGGACCATTGTAGCAGAACCAGGGGACACA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGATCTATGAGTAACAACTaGAAGCTCTTTAGTTCTTTC +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGSMSNN*KLFSSF
Trigger: GAAAGAACTAAAGAGCTTGCAGTTGTTACTCATAGA...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTACTGTGGCACTTGTGTaGCATTGTAAGACCCAAGTA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFTVALV*HCKTQV
Trigger: TACTTGGGTCTTACAATGGCACACAAGTGCCACAGT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCGAACCAGTGAGTCGTaGCAGTGGTTGGGTAAAACT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVRTSES*QWLGKT
Trigger: AGTTTTACCCAACCACTGGCACGACTCACTGGTTCG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTAAAGCACCCAGTAGGTaGGTTGTTTTATCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFKAPSR*VVLSFP
Trigger: TGGAAAAGATAAAACAACGCACCTACTGGGTGCTTT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTAGAGCTGATTTGATGTaGTGCTTAGTGTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFRADLM*CLVSVL
Trigger: GAGGACTGACACTAAGCAGCACATCAAATCAGCTCT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTCCAATCACAGTCCCTaGTGTGTGGGTATGGATGAG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVSNHSP*CVGMDE
Trigger: CTCATCCATACCCACACAGCAGGGACTGTGATTGGA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACAACTGCAAAGTCATTaGCAATCCTTCTTCCAAATC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEQLQSH*QSFFQI
Trigger: GATTTGGAAGAAGGATTGGCAATGACTTTGCAGTTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGAGAATCCAAACCAATTaGTGTGTACTCAAGATGAAA +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVRIQTN*CVLKMK
Trigger: TTTCATCTTGAGTACACAGCAATTGGTTTGGATTCT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAAGAATCCAAACCAATTaGTGTGTACTCAAGATGAAA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGRIQTN*CVLKMK
Trigger: TTTCATCTTGAGTACACAGCAATTGGTTTGGATTCT...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCCTTTTCCACTGAGATaGTCCACGCACACATCTGCA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVPFPLR*STHTSA
Trigger: TGCAGATGTGTGCGTGGAGCATCTCAGTGGAAAAGG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACCTTTTCCACTGAGATaGTCCACGCACACATCTGCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQPFPLR*STHTSA
Trigger: TGCAGATGTGTGCGTGGAGCATCTCAGTGGAAAAGG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTAGCCTTTCTTGTTATTaGCATGATCTGCAGACCATT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFSLSCY*HDLQTI
Trigger: AATGGTCTGCAGATCATGGCAATAACAAGAAAGGCT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAATTCCACAAGAAATTaGTTGGCAGGCAGGGACGGG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVNSTRN*LAGRDG
Trigger: CCCGTCCCTGCCTGCCAAGCAATTTCTTGTGGAATT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAGTTCACCACTTTaGACACTGGTGGAGGATGGC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQNSSPL*TLVEDG
Trigger: GCCATCCTCCACCAGTGTGCAAAGTGGTGAACTGTT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCACATTGCACAGCTTTaGACTCTGGCTGTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYHIAQL*TLAVFQ
Trigger: CTGGAAGACAGCCAGAGTGCAAAGCTGTGCAATGTG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCACTCCAGGTACCATTaGCTACACAGGTCAGAACGG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLHSRYH*LHRSER
Trigger: CCGTTCTGACCTGTGTAGGCAATGGTACCTGGAGTG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGATCTGCATACTCTATaGTCAGTTCCCCCTGCTAAG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLDLHTL*SVPPAK
Trigger: CTTAGCAGGGGGAACTGAGCATAGAGTATGCAGATC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTCAATGGCCACAGAACTaGTATTTGTACCATGAGGCT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFQWPQN*YLYHEA
Trigger: AGCCTCATGGTACAAATAGCAGTTCTGTGGCCATTG...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTACTGTGTTTTGGGTaGAGTCCTTTGTTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVLCFG*SPLFVK
Trigger: CTTTACAAACAAAGGACTGCACCCAAAACACAGTAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCAGGCTCCCGGGGTTTaGATTCCTTTGCTCTGCTTT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLQAPGV*IPLLCF
Trigger: AAAGCAGAGCAAAGGAATCCAAACCCCGGGAGCCTG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTTCAGCTCTGCAAATTaGAACAGGGAAATCCCAGGA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFFSSAN*NREIPG
Trigger: TCCTGGGATTTCCCTGTTCCAATTTGCAGAGCTGAA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCTGGTTCTGCTACAATaGTCCATGTGCAGTCTGCAT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLVLLQ*SMCSLH
Trigger: ATGCAGACTGCACATGGACCATTGTAGCAGAACCAG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTTACATACAGGCCTGTaGTCACTCCAAGCAGCAAAC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLHTGL*SLQAAN
Trigger: GTTTGCTGCTTGGAGTGACCACAGGCCTGTATGTAA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTGTAAAGGTGCCACTTaGTCCTTGAAGATTAGAGCC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFCKGAT*SLKIRA
Trigger: GGCTCTAATCTTCAAGGACCAAGTGGCACCTTTACA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGTGTGACAATTCAGAGAGTTTaGATAAAATTCTGGGTAACC +
Preference number: 4 (lower is better)
Translates to: LFAIIPQEKVTQQVLKSVTIQRV*IKFWVT
Trigger: GGTTACCCAGAATTTTATCCAAACTCTCTGAATTGT...CACACTTTTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAGTCGTGCCAGTGGTTaGGTAAAACTACCGTTCTCT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLSRASG*VKLPFS
Trigger: AGAGAACGGTAGTTTTACCCAACCACTGGCACGACT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATGGAGAGTATAGCCTaGATTGCATCCATAGATGAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEMESIA*IASIDD
Trigger: ATCATCTATGGATGCAATCCAGGCTATACTCTCCAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGGTTATTATCATATaGAAAGGGATAGCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEKVIII*KGIARG
Trigger: TCCCCTGGCTATCCCTTTCCATATGATAATAACCTT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGAGGAAGTCATAGTTTaGTTCTATGCTAAAACTGAT +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGEEVIV*FYAKTD
Trigger: ATCAGTTTTAGCATAGAACCAAACTATGACTTCCTC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAATTCCAGCTCCCTCTaGCACTGTGATCTTCCAAAC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLNSSSL*HCDLPN
Trigger: GTTTGGAAGATCACAGTGCCAGAGGGAGCTGGAATT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTACTGAGCCAAACAAATaGGGATTGGATAATTCCATC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFTEPNK*GLDNSI
Trigger: GATGGAATTATCCAATCCCCATTTGTTTGGCTCAGT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CCCAGAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGAAAAATTTACAAACTaGAGATGTACACCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: PRVQPDFCKTLHGKHEDGEKFTN*RCTPKP
Trigger: TGGCTTTGGTGTACATCTCCAGTTTGTAAATTTTTC...TCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTCTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTGCATTAGGGACAGGTaGTGGAGGTTGGCACACTCT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLCIRDR*WRLAHS
Trigger: AGAGTGTGCCAACCTCCACCACCTGTCCCTAATGCA...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCCAGTCGTAGTTCATTaGCAGGACAGAGCACTTGAC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYPVVVH*QDRALD
Trigger: GTCAAGTGCTCTGTCCTGCCAATGAACTACGACTGG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGATGTATCCATGAGGTaGAGATTCTGGTGTGCTACA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFDVSMR*RFWCAT
Trigger: TGTAGCACACCAGAATCTCCACCTCATGGATACATC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGACCCGCTAGACATCTaGTTTCTGATCCACTCCACA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQDPLDI*FLIHST
Trigger: TGTGGAGTGGATCAGAAACCAGATGTCTAGCGGGTC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAACAGGCACACAGGATaGGAGCTGACCAGACCAGTT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNNRHTG*ELTRPV
Trigger: AACTGGTCTGGTCAGCTCCCATCCTGTGTGCCTGTT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTTGAGATCCATGCCTTaGTACTCCAGGGTTTTCACA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFLRSMP*YSRVFT
Trigger: TGTGAAAACCCTGGAGTACCAAGGCATGGATCTCAA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTGTCCCTTTTTGCAGTaGAACTGCACAACACTTCCT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFCPFLQ*NCTTLP
Trigger: AGGAAGTGTTGTGCAGTTCCACTGCAAAAAGGGACA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTAAACTGTGTTCAAGTTaGGGTCGAATCGTACTGCCT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFKLCSS*GRIVLP
Trigger: AGGCAGTACGATTCGACCCCAACTTGAACACAGTTT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTACTTCAGCTATCCTTTaGCAAGTAATGCTTTTTGCT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFTSAIL*QVMLFA
Trigger: AGCAAAAAGCATTACTTGTCAAAGGATAGCTGAAGT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTACACTTTCATCTGTTTaGAGATGGAGCCACATTTGG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFTLSSV*RWSHIW
Trigger: CCAAATGTGGCTCCATCTTCAAACAGATGAAAGTGT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCCAGATCAAAGTCATTaGAGGAAAGGTGGATCCGGC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLPDQSH*RKGGSG
Trigger: GCCGGATCCACCTTTCCTTCAATGACTTTGATCTGG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAGCGCAATTGAGCCCTaGAGTTTCCATAAAGGCCAG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLSAIEP*SFHKGQ
Trigger: CTGGCCTTTATGGAAACTTCAGGGCTCAATTGCGCT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGACTCGGCTACCATATTaGGGAATCCCAGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLTRLPY*GIPGSS
Trigger: TGAAGACCCTGGGATTCCTCAATATGGTAGCCGAGT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCCTGGGTCTTCACAATaGGAAAGTTCAAAACTGGTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLPGSSQ*ESSKLV
Trigger: CACCAGTTTTGAACTTTCTCATTGTGAAGACCCAGG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTAGTGACCTTGGTCACTaGTCTTATATCCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFSDLGH*SYIQTV
Trigger: CACAGTTTGGATATAAGATCAGTGACCAAGGTCACT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGTGCTGCCAGCAAAGTaGCCTTGGTCACTGATCTTA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLVLPAK*PWSLIL
Trigger: TAAGATCAGTGACCAAGGTCACTTTGCTGGCAGCAC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGATTGCATCCATAGATaGTGGTGCTGCCAGCAAAGT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVDCIHR*WCCQQS
Trigger: ACTTTGCTGGCAGCACCATCATCTATGGATGCAATC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTACTGAACTTGAAAACTaGATTGCGAATCCAGATTTG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFTELEN*IANPDL
Trigger: CAAATCTGGATTCGCAATTCAGTTTTCAAGTTCAGT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTATCCAGGATCACACTaGAAGACAACAGTGTCCCCA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVYPGSH*KTTVSP
Trigger: TGGGGACACTGTTGTCTTTCAGTGTGATCCTGGATA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTAATAGGTGACTGTTaGCCCCAATTTATAATCCAT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVIGDC*PQFIIH
Trigger: ATGGATTATAAATTGGGGTCAACAGTCACCTATTAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAACAACATCGTGGAGTaGTGTCTGGAAAAATACAAA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPENNIVE*CLEKYK
Trigger: TTTGTATTTTTCCAGACATCACTCCACGATGTTGTT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCTAACTACTTGTACTTaGATTCCAGCTCCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVLTTCT*IPAPSG
Trigger: GCCAGAGGGAGCTGGAATTCAAGTACAAGTAGTTAG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGCTGTGTACTCAAGATaGAATCCTGCAGCAGAGACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYAVYSR*NPAAET
Trigger: TGTCTCTGCTGCAGGATTTCATCTTGAGTACACAGC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGGTCCATCATACACCTaGAGAACATCAAACTCCTTT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFGPSYT*RTSNSF
Trigger: AAAGGAGTTTGATGTTCTTCAGGTGTATGATGGACC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAATACATTAAAAGCAGCTaGATAATCTCCACTGAGAGA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEYIKSS*IISTER
Trigger: TCTCTCAGTGGAGATTATTCAGCTGCTTTTAATGTA...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCAATGTATCTTATCCTaGAGCCTTTCTTGTTATTGC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFQCILS*SLSCYC
Trigger: GCAATAACAAGAAAGGCTTCAGGATAAGATACATTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACAATGTATCTTATCCTaGAGCCTTTCTTGTTATTGC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEQCILS*SLSCYC
Trigger: GCAATAACAAGAAAGGCTTCAGGATAAGATACATTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCTGATGATGTATCCATaGGGTGGAGATTCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYLMMYP*GGDSGV
Trigger: CACACCAGAATCTCCACCTCATGGATACATCATCAG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCGAGGGGTCTTATTGTaGTTACTCCATGTCCCATCT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYRGVLL*LLHVPS
Trigger: AGATGGGACATGGAGTAATCACAATAAGACCCCTCG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACGAGGGGTCTTATTGTaGTTACTCCATGTCCCATCT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQRGVLL*LLHVPS
Trigger: AGATGGGACATGGAGTAATCACAATAAGACCCCTCG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCTTGCCCATTCACAATaGGTTCTGGAATTCCACAGT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLAHSQ*VLEFHS
Trigger: ACTGTGGAATTCCAGAACTCATTGTGAATGGGCAAG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCTCTACATGTTGGCATaGCTCCACTCCATGTGCCAT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLYMLA*LHSMCH
Trigger: ATGGCACATGGAGTGGAGTCATGCCAACATGTAGAG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTGTGTCCCCTGGTTCTaGTACAATGGTCCATGTGCA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNCVPWF*YNGPCA
Trigger: TGCACATGGACCATTGTAGCAGAACCAGGGGACACA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATACACATTGTGCATTaGTGTCATACTGGAATGGAA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFIHIVH*CHTGME
Trigger: TTCCATTCCAGTATGACAGCAATGCACAATGTGTAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTACAGATGGGTATATTTaGAGACCATTGGTTATTCTC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFTDGYI*RPLVIL
Trigger: GAGAATAACCAATGGTCTGCAAATATACCCATCTGT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGTGTGGAAGTTGAACTaGACACCTTTTCCATGGGTG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVVWKLN*TPFPWV
Trigger: CACCCATGGAAAAGGTGTGCAGTTCAACTTCCACAC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTCCCTCGTTATTTGTTaGAGATGCACCACATTCAGC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLSLVIC*RCTTFS
Trigger: GCTGAATGTGGTGCATCTGCAACAAATAACGAGGGA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGCTGATTTGATGTGCTaGTTAGTGTCAGTCCTCGCA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVADLMC*LVSVLA
Trigger: TGCGAGGACTGACACTAAGCAGCACATCAAATCAGC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGCTGATTTGATGTGCTaGTTAGTGTCAGTCCTCGCA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYADLMC*LVSVLA
Trigger: TGCGAGGACTGACACTAAGCAGCACATCAAATCAGC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAGAGCTGATTTGATGTaGTGCTTAGTGTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLRADLM*CLVSVL
Trigger: GAGGACTGACACTAAGCAGCACATCAAATCAGCTCT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATCCAAACTGTGGAATaGCTGGGTCTTCACAATGAG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLIQTVE*LGLHNE
Trigger: CTCATTGTGAAGACCCAGGCATTCCACAGTTTGGAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTGCACTTCAGAAGGCTaGTTCCATGGAGAGTATAGC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVCTSEG*FHGEYS
Trigger: GCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACACTGGTGGGCTGGGCTaGCAGAAGTATCGATTTTCT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNTGGLG*QKYRFS
Trigger: AGAAAATCGATACTTCTGGCAGCCCAGCCCACCAGT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTCCAATCACAGTCCCTaGTGTGTGGGTATGGATGAG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNSNHSP*CVGMDE
Trigger: CTCATCCATACCCACACAGCAGGGACTGTGATTGGA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCTCCGAAAAGCCAAGTaGATGGTATTCGAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLRKAK*MVFELL
Trigger: GAGCAGCTCGAATACCATGCACTTGGCTTTTCGGAG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTCCGAAAAGCCAAGTaGATGGTATTCGAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLRKAK*MVFELL
Trigger: GAGCAGCTCGAATACCATGCACTTGGCTTTTCGGAG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGACTTCCAAGTCTCGGTaGATTGTTGTCTCCCCCATC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLTSKSR*IVVSPI
Trigger: GATGGGGGAGACAACAATGCACCGAGACTTGGAAGT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTGTACTATTGAGAAGATaGGGTATTGTTGTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFVLLRR*GIVVPE
Trigger: TTCAGGAACAACAATACCGCATCTTCTCAATAGTAC...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCTCAAGATGAAATCCTaGAGCAGAGACACTGATGTC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLKMKS*SRDTDV
Trigger: GACATCAGTGTCTCTGCTGCAGGATTTCATCTTGAG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGCTTTATTGTCCATGTaGAATCTAAGCTGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLALLSM*NLSCWG
Trigger: ACCCCAGCAGCTTAGATTGCACATGGACAATAAAGC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAGAGAAGATGGTATTTaGGGACCACTAAGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQREDGI*GPLSRP
Trigger: TGGACGGCTTAGTGGTCCGCAAATACCATCTTCTCT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATTCTGTCAGGATTTCTaGATTAGGGACAGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQFCQDF*IRDRWW
Trigger: CCACCACCTGTCCCTAATGCAGAAATCCTGACAGAA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGTCGCTCTCCCAATCTaGATGTCAGAATTGCATTGC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVVALPI*MSELHC
Trigger: GCAATGCAATTCTGACATGCAGATTGGGAGAGCGAC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGTCGCTCTCCCAATCTaGATGTCAGAATTGCATTGC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQVALPI*MSELHC
Trigger: GCAATGCAATTCTGACATGCAGATTGGGAGAGCGAC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCCTTTTCCACTGAGATaGTCCACGCACACATCTGCA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLPFPLR*STHTSA
Trigger: TGCAGATGTGTGCGTGGAGCATCTCAGTGGAAAAGG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGTTATTGCCATGATCTaGAGACCATTGAAGAAATAC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEVIAMI*RPLKKY
Trigger: GTATTTCTTCAATGGTCTGCAGATCATGGCAATAAC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAACAGTTCACCACTTTaGACACTGGTGGAGGATGGC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLNSSPL*TLVEDG
Trigger: GCCATCCTCCACCAGTGTGCAAAGTGGTGAACTGTT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATGAGCCACTCCAAGTaGCATCAGTTTGGCATAACC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYMSHSK*HQFGIT
Trigger: GGTTATGCCAAACTGATGGCACTTGGAGTGGCTCAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATGAGCCACTCCAAGTaGCATCAGTTTGGCATAACC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVMSHSK*HQFGIT
Trigger: GGTTATGCCAAACTGATGGCACTTGGAGTGGCTCAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGATCTGCATACTCTATaGTCAGTTCCCCCTGCTAAG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYDLHTL*SVPPAK
Trigger: CTTAGCAGGGGGAACTGAGCATAGAGTATGCAGATC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGTGAGAACACAGATTTaGTACTTGTCACTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLVRTQI*YLSLVV
Trigger: CACCACCAGTGACAAGTACCAAATCTGTGTTCTCAC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATTTGGGTGGAACTCCTaGATTTCCACAGGAGCTACT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQFGWNS*ISTGAT
Trigger: AGTAGCTCCTGTGGAAATCCAGGAGTTCCACCCAAA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGTTGCTGATAATTGGTaGTGGTATATTCATTCCAGA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEVADNW*WYIHSR
Trigger: TCTGGAATGAATATACCACCACCAATTATCAGCAAC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTTACATACAGGCCTGTaGTCACTCCAAGCAGCAAAC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVLHTGL*SLQAAN
Trigger: GTTTGCTGCTTGGAGTGACCACAGGCCTGTATGTAA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGCATTGCTGTCATACTaGAATGGAAAGTTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFALLSY*NGKLGD
Trigger: ATCTCCCAACTTTCCATTCCAGTATGACAGCAATGC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGTGGATCCGGCTTCCTaGATCAGAGATTATTGTCCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQVDPAS*IRDYCP
Trigger: TGGACAATAATCTCTGATCCAGGAAGCCGGATCCAC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTTACTAGTAAGATaGGAAGGCACCTCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLLLVR*EGTSAP
Trigger: TGGGGCAGAGGTGCCTTCCCATCTTACTAGTAACAG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTCCAGTCGCAGTATGTaGCTGTTACTAGTAAGATGG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLSSRSM*LLLVRW
Trigger: CCATCTTACTAGTAACAGCCACATACTGCGACTGGA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATGGAGCTCCACATCTTaGAATTGGTCCACTCCACAT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQWSSTS*NWSTPH
Trigger: ATGTGGAGTGGACCAATTCCAAGATGTGGAGCTCCA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCCTTCTTCCAAATCTTaGCTCGGGCACAGAACTGCA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNPSSKS*LGHRTA
Trigger: TGCAGTTCTGTGCCCGAGCCAAGATTTGGAAGAAGG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATGGCTCTGGAGCCATaGAGAATGTATCCTGGATTA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLMALEP*RMYPGL
Trigger: TAATCCAGGATACATTCTCCATGGCTCCAGAGCCAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCAAACAAATGGGGATTaGATAATTCCATCTCCTTAC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFQTNGD*IIPSPY
Trigger: GTAAGGAGATGGAATTATCCAATCCCCATTTGTTTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAAACCCATTTCGAAATaGGCGAGGATCAGGACAGCT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYKPISK*ARIRTA
Trigger: AGCTGTCCTGATCCTCGCCCATTTCGAAATGGGTTT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAGCCAAAAGCAGTCTTaGAAGTTTGGATATTCATCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPESQKQS*KFGYSS
Trigger: TGATGAATATCCAAACTTCCAAGACTGCTTTTGGCT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATGAGGTGGAGATTCTaGTGTGCTACAGTAAAAGGC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLMRWRF*CATVKG
Trigger: GCCTTTTACTGTAGCACACCAGAATCTCCACCTCAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAATTAGTTGGGGCTTTTaGAATTCCACAAGAAATTGC +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEISWGF*NSTRNC
Trigger: GCAATTTCTTGTGGAATTCCAAAAGCCCCAACTAAT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTATTAGTTGGGGCTTTTaGAATTCCACAAGAAATTGC +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFISWGF*NSTRNC
Trigger: GCAATTTCTTGTGGAATTCCAAAAGCCCCAACTAAT...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGACCCGCTAGACATCTaGTTTCTGATCCACTCCACA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNDPLDI*FLIHST
Trigger: TGTGGAGTGGATCAGAAACCAGATGTCTAGCGGGTC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCAATGTCCATTTAACTaGCAAGTCCTGGATGCCTGG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVQCPFN*QVLDAW
Trigger: CCAGGCATCCAGGACTTGCCAGTTAAATGGACATTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCAATGTCCATTTAACTaGCAAGTCCTGGATGCCTGG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYQCPFN*QVLDAW
Trigger: CCAGGCATCCAGGACTTGCCAGTTAAATGGACATTG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAATCACTTTCCTGTCTaGAGCCATGACCAGGTGTAC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQNHFPV*SHDQVY
Trigger: GTACACCTGGTCATGGCTCCAGACAGGAAAGTGATT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACAGTCCAACTGCCATTaGATAAACATGTTCTTTCTT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEQSNCH*INMFFL
Trigger: AAGAAAGAACATGTTTATCCAATGGCAGTTGGACTG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTCTCAATCCATTGGCTaGTATACCTGGGTCTCCACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYSQSIG*YTWVST
Trigger: TGTGGAGACCCAGGTATACCAGCCAATGGATTGAGA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTATCCATTTAACTCTATaGTATAGCCTGGCTGGCACA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFIHLTL*YSLAGT
Trigger: TGTGCCAGCCAGGCTATACCATAGAGTTAAATGGAT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAACAGCTCTACATGTTaGCATGACTCCACTCCATGT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLNSSTC*HDSTPC
Trigger: ACATGGAGTGGAGTCATGCCAACATGTAGAGCTGTT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACTTCCATTAGAGATCTaGGGAGGAGTTGAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQLPLEI*GGVEQV
Trigger: TACCTGCTCAACTCCTCCCCAGATCTCTAATGGAAG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGATGAGTGTGTACCCATaGGAGGGAAGGTCCATTCCT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLMSVYP*EGRSIP
Trigger: AGGAATGGACCTTCCCTCCCATGGGTACACACTCAT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAACTTTCACTAATATTTTaGAACCAGCTTCACAGACAG +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPELSLIF*NQLHRQ
Trigger: CTGTCTGTGAAGCTGGTTCCAAAATATTAGTGAAAG...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCTTTCACTAATATTTTaGAACCAGCTTCACAGACAG +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFLSLIF*NQLHRQ
Trigger: CTGTCTGTGAAGCTGGTTCCAAAATATTAGTGAAAG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCATTGGTGTCATACATaGGGTTCTCAAAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLHWCHT*GSQRLL
Trigger: AAGCAGCCTTTGAGAACCCCATGTATGACACCAATG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTCCCCTCCACAGACTTaGCATTGGTGTCATACATGG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLSPPQT*HWCHTW
Trigger: CCATGTATGACACCAATGCCAAGTCTGTGGAGGGGA...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTCCCCTCCACAGACTTaGCATTGGTGTCATACATGG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNSPPQT*HWCHTW
Trigger: CCATGTATGACACCAATGCCAAGTCTGTGGAGGGGA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATTTTCTTCTTCAGGATaGAGTCTAGGCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQFSSSG*SLGGHI
Trigger: AATGTGGCCGCCTAGACTTCATCCTGAAGAAGAAAA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTTTTCTTCTTCAGGATaGAGTCTAGGCGGCCACATT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYFSSSG*SLGGHI
Trigger: AATGTGGCCGCCTAGACTTCATCCTGAAGAAGAAAA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAATTGGGGAATCTGGTaGGTCACCATCTTTAACAGC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQNWGIW*VTIFNS
Trigger: GCTGTTAAAGATGGTGACTCACCAGATTCCCCAATT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATAGAGTGGTCAGCTTaGAATTCCAGTCGCAGTATG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYIEWSA*NSSRSM
Trigger: CATACTGCGACTGGAATTTCAAGCTGACCACTCTAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATAGAACTGCCCAATTaGAAGTTGTCTCCAAAGCGA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLIELPN*KLSPKR
Trigger: TCGCTTTGGAGACAACTTTCAATTGGGCAGTTCTAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAACTCTAGCCAGAGCTaGTTTGATGTGCTGCTTAGT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYNSSQS*FDVLLS
Trigger: ACTAAGCAGCACATCAAATCAGCTCTGGCTAGAGTT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAACTCTAGCCAGAGCTaGTTTGATGTGCTGCTTAGT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVNSSQS*FDVLLS
Trigger: ACTAAGCAGCACATCAAATCAGCTCTGGCTAGAGTT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAGTGACCTTGGTCACTaGTCTTATATCCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLSDLGH*SYIQTV
Trigger: CACAGTTTGGATATAAGATCAGTGACCAAGGTCACT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTCGGAGTATATCATGTaGGGCTTCTGTATCGAAAGC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYSEYIM*GFCIES
Trigger: GCTTTCGATACAGAAGCCTCACATGATATACTCCGA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGAAATCCGGTGTAACTaGCAGATCCATCACTCCGAA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLEIRCN*QIHHSE
Trigger: TTCGGAGTGATGGATCTGTCAGTTACACCGGATTTC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCTAACTACTTGTACTTaGATTCCAGCTCCCTCTGGC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLTTCT*IPAPSG
Trigger: GCCAGAGGGAGCTGGAATTCAAGTACAAGTAGTTAG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGCTGTGTACTCAAGATaGAATCCTGCAGCAGAGACA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNAVYSR*NPAAET
Trigger: TGTCTCTGCTGCAGGATTTCATCTTGAGTACACAGC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTTGATCACATTGGAATaGCACCACATCACCAACCAT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLITLE*HHITNH
Trigger: ATGGTTGGTGATGTGGTGTCATTCCAATGTGATCAA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTGGGAAACATTCGAATaGAATGGTTTGACCCACAGT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLWETFE*NGLTHS
Trigger: ACTGTGGGTCAAACCATTTCATTCGAATGTTTCCCA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGGTGAGCTCCTTGGATaGCAGTCTGTATCCATCATT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLGELLG*QSVSII
Trigger: AATGATGGATACAGACTGTCATCCAAGGAGCTCACC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCTTGCCCATTCACAATaGGTTCTGGAATTCCACAGT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVLAHSQ*VLEFHS
Trigger: ACTGTGGAATTCCAGAACTCATTGTGAATGGGCAAG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGGAATAGTGAACTGTTaGCCCAAAAGTATACTTCTC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFGIVNC*PKSILL
Trigger: GAGAAGTATACTTTTGGGTCAACAGTTCACTATTCC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCCAGGCAAGAATAGATaGCAGAACTGGAAAATGTTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLPGKNR*QNWKML
Trigger: CAACATTTTCCAGTTCTGTCATCTATTCTTGCCTGG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCCAAATGTGTTGTTTTaGGATCCATGCCTTGGTACT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLPNVLF*DPCLGT
Trigger: AGTACCAAGGCATGGATCTCAAAACAACACATTTGG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGGGTTTGGATTCCTTTaGTCTGCTTTCTCCTTTGCG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLGFGFL*SAFSFA
Trigger: CGCAAAGGAGAAAGCAGAGCAAAGGAATCCAAACCC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTAAGCATCTTCAGCTCTaGAAATTGGAACAGGGAAAT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFKHLQL*KLEQGN
Trigger: ATTTCCCTGTTCCAATTTGCAGAGCTGAAGATGCTT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGTGGCAGTCCTGATATaGTCCTCTAACTCACCAATG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNVAVLI*SSNSPM
Trigger: CATTGGTGAGTTAGAGGAGCATATCAGGACTGCCAC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTTGTACTTTGTGTATCTaGTTGATGAGGAGAAAGCTG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFCTLCI*LMRRKL
Trigger: CAGCTTTCTCCTCATCAAGCAGATACACAAAGTACA...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTCATCACAGGAGAACTaGACAGTGGATCCAAGGCTA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNSSQEN*TVDPRL
Trigger: TAGCCTTGGATCCACTGTGCAGTTCTCCTGTGATGA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGACATTTGGCTTCTCATaGTCACTATCAGGTCTGGCA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVTFGFS*SLSGLA
Trigger: TGCCAGACCTGATAGTGAGCATGAGAAGCCAAATGT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGTGTGGAAGTTGAACTaGACACCTTTTCCATGGGTG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLVWKLN*TPFPWV
Trigger: CACCCATGGAAAAGGTGTGCAGTTCAACTTCCACAC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAGAGCTGATTTGATGTaGTGCTTAGTGTCAGTCCTC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVRADLM*CLVSVL
Trigger: GAGGACTGACACTAAGCAGCACATCAAATCAGCTCT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATCCAAACTGTGGAATaGCTGGGTCTTCACAATGAG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVIQTVE*LGLHNE
Trigger: CTCATTGTGAAGACCCAGGCATTCCACAGTTTGGAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTGCACTTCAGAAGGCTaGTTCCATGGAGAGTATAGC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNCTSEG*FHGEYS
Trigger: GCTATACTCTCCATGGAAGCAGCCTTCTGAAGTGCA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAGAGAAGATGGTATTTaGGGACCACTAAGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLREDGI*GPLSRP
Trigger: TGGACGGCTTAGTGGTCCGCAAATACCATCTTCTCT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGTTAGCCTGACACTGTaGCTTTGTTGGTCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNVSLTL*LCWSLH
Trigger: ATGCAAGGACCAACAAAGGCACAGTGTCAGGCTAAC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGTCTTCCAGTCCAACTaGCATTGGATAAACATGTTC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLVFQSN*HWINMF
Trigger: GAACATGTTTATCCAATGGCAGTTGGACTGGAAGAC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCATTCCTACTACGTTTaGATGAGCAGGACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVHSYYV*MSRTFW
Trigger: CCAGAAAGTCCTGCTCATGCAAACGTAGTAGGAATG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCAATGGCCACAGAACTaGTATTTGTACCATGAGGCT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVQWPQN*YLYHEA
Trigger: AGCCTCATGGTACAAATAGCAGTTCTGTGGCCATTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGTACTGTGTTTTGGGTaGAGTCCTTTGTTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFVLCFG*SPLFVK
Trigger: CTTTACAAACAAAGGACTGCACCCAAAACACAGTAC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCAGTACACCTTTGGGTaGAACTCCTGGATTTCCACA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNQYTFG*NSWIST
Trigger: TGTGGAAATCCAGGAGTTCCACCCAAAGGTGTACTG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTCCTCGGAAAGTCTATaGCTGGTGACAGCTGTAACA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNSSESL*LVTAVT
Trigger: TGTTACAGCTGTCACCAGCCATAGACTTTCCGAGGA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTCTCTTCCCATTTTCTaGTTCTCCAGGATCTGGACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYSLPIF*FSRIWT
Trigger: TGTCCAGATCCTGGAGAACCAGAAAATGGGAAGAGA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAAAGGAAAGATACAGATaGGTATATTTGCAGACCATT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEKERYR*VYLQTI
Trigger: AATGGTCTGCAAATATACCCATCTGTATCTTTCCTT...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTCCAGTCGCAGTATGTaGCTGTTACTAGTAAGATGG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVSSRSM*LLLVRW
Trigger: CCATCTTACTAGTAACAGCCACATACTGCGACTGGA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGGGTATTCCAGGATCTaGGCATTCATTATGTCCAAA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLGYSRI*AFIMSK
Trigger: TTTGGACATAATGAATGCCCAGATCCTGGAATACCC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTGGAGCTCCACATCTTaGAATTGGTCCACTCCACAT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNWSSTS*NWSTPH
Trigger: ATGTGGAGTGGACCAATTCCAAGATGTGGAGCTCCA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTGGAGCTCCACATCTTaGAATTGGTCCACTCCACAT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLWSSTS*NWSTPH
Trigger: ATGTGGAGTGGACCAATTCCAAGATGTGGAGCTCCA...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGCTGAACAGAAACTGTaGCACTTGTGTGCCATTGTA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVAEQKL*HLCAIV
Trigger: TACAATGGCACACAAGTGCCACAGTTTCTGTTCAGC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTGCACACCTTTTCCATaGGTGACATCAACTGTCCAT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYCTPFP*VTSTVH
Trigger: ATGGACAGTTGATGTCACCCATGGAAAAGGTGTGCA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTGCACACCTTTTCCATaGGTGACATCAACTGTCCAT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVCTPFP*VTSTVH
Trigger: ATGGACAGTTGATGTCACCCATGGAAAAGGTGTGCA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAGTCGTGCCAGTGGTTaGGTAAAACTACCGTTCTCT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNSRASG*VKLPFS
Trigger: AGAGAACGGTAGTTTTACCCAACCACTGGCACGACT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAGTGAGTCGTGCCAGTaGTTGGGTAAAACTACCGTT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLSESCQ*LGKTTV
Trigger: AACGGTAGTTTTACCCAACCACTGGCACGACTCACT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTATGGAGAGTATAGCCTaGATTGCATCCATAGATGAT +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFMESIA*IASIDD
Trigger: ATCATCTATGGATGCAATCCAGGCTATACTCTCCAT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGAGGAAGTCATAGTTTaGTTCTATGCTAAAACTGAT +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEEEVIV*FYAKTD
Trigger: ATCAGTTTTAGCATAGAACCAAACTATGACTTCCTC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATGGCTCTGGAGCCATaGAGAATGTATCCTGGATTA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYMALEP*RMYPGL
Trigger: TAATCCAGGATACATTCTCCATGGCTCCAGAGCCAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATTTAATTCCACTGCTTaGGGTTTGTGGCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQFNSTA*GLWLRT
Trigger: TGTCCTGAGCCACAAACCCCAAGCAGTGGAATTAAA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp AAAAACACTCTTCGCTATCATTCCTCAGGAAAAGGTGACCCAGCAAGTCCTGAAGAAAAATTTACAAACTaGAGATGTACACCAAAGCCA +
Preference number: 4 (lower is better)
Translates to: KNTLRYHSSGKGDPASPEEKFTN*RCTPKP
Trigger: TGGCTTTGGTGTACATCTCCAGTTTGTAAATTTTTC...TTCAGGACTTGCTGGGTCACCTTTTCCTGAGGAATGATAGCGAAGAGTGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAAGAGCTTCACACCTTaGCAGCGGATGGTTCCAATT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLKSFTP*QRMVPI
Trigger: AATTGGAACCATCCGCTGCCAAGGTGTGAAGCTCTT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGATGTATCCATGAGGTaGAGATTCTGGTGTGCTACA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVDVSMR*RFWCAT
Trigger: TGTAGCACACCAGAATCTCCACCTCATGGATACATC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGATGTATCCATGAGGTaGAGATTCTGGTGTGCTACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYDVSMR*RFWCAT
Trigger: TGTAGCACACCAGAATCTCCACCTCATGGATACATC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGATTCCTCCATTAGTTaGGGCTTTTGGAATTCCACA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLDSSIS*GFWNST
Trigger: TGTGGAATTCCAAAAGCCCCAACTAATGGAGGAATC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATTCACAATGAGTTCTaGAATTCCACAGTGACCCGC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVIHNEF*NSTVTR
Trigger: GCGGGTCACTGTGGAATTCCAGAACTCATTGTGAAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTGTTCTTCCATAAATTaGACTACCAGGGTGACCACA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLCSSIN*TTRVTT
Trigger: TGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGACACTGTGCCTTTGTTaGTCCTTGCATAAGATACCC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVTLCLC*SLHKIP
Trigger: GGGTATCTTATGCAAGGACCAACAAAGGCACAGTGT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAATCACTTTCCTGTCTaGAGCCATGACCAGGTGTAC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNNHFPV*SHDQVY
Trigger: GTACACCTGGTCATGGCTCCAGACAGGAAAGTGATT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAATTGGCTGGTATACCTaGGTCTCCACAACTGATGAT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQIGWYT*VSTTDD
Trigger: ATCATCAGTTGTGGAGACCCAGGTATACCAGCCAAT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCTCTATGGTATAGCCTaGCTGGCACATGTAAGAAAC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVLYGIA*LAHVRN
Trigger: GTTTCTTACATGTGCCAGCCAGGCTATACCATAGAG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATGAGCAGGACTTTCTaGTTGTTTACAACTGTGAGG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLMSRTF*LFTTVR
Trigger: CCTCACAGTTGTAAACAACCAGAAAGTCCTGCTCAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAGTGCAGCCCGATTTCTGTAAAACTCTCCATGGTAAACATGAAGACGGAGTTTCACAGAAGCATGTGCTaGCACTTTAATAAGATATAT +
Preference number: 4 (lower is better)
Translates to: ECSPISVKLSMVNMKTEFHRSMC*HFNKIY
Trigger: ATATATCTTATTAAAGTGCCAGCACATGCTTCTGTG...AAACTCCGTCTTCATGTTTACCATGGAGAGTTTTACAGAAATCGGGCTGCACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCATTGGTGTCATACATaGGGTTCTCAAAGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYHWCHT*GSQRLL
Trigger: AAGCAGCCTTTGAGAACCCCATGTATGACACCAATG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAAACTGTGTTCAAGTTaGGGTCGAATCGTACTGCCT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVKLCSS*GRIVLP
Trigger: AGGCAGTACGATTCGACCCCAACTTGAACACAGTTT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATCTGTAAATATCAGTaGGATTGTGTCCCCTGGTTC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVICKYQ*DCVPWF
Trigger: GAACCAGGGGACACAATCTCACTGATATTTACAGAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGACACTTTCATCTGTTTaGAGATGGAGCCACATTTGG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVTLSSV*RWSHIW
Trigger: CCAAATGTGGCTCCATCTTCAAACAGATGAAAGTGT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAATTGGGGAATCTGGTaGGTCACCATCTTTAACAGC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNNWGIW*VTIFNS
Trigger: GCTGTTAAAGATGGTGACTCACCAGATTCCCCAATT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGATAGAGTGGTCAGCTTaGAATTCCAGTCGCAGTATG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLIEWSA*NSSRSM
Trigger: CATACTGCGACTGGAATTTCAAGCTGACCACTCTAT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATAGAACTGCCCAATTaGAAGTTGTCTCCAAAGCGA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVIELPN*KLSPKR
Trigger: TCGCTTTGGAGACAACTTTCAATTGGGCAGTTCTAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAACTACCGTTCTCTGTaGTCAGCAAATAGTCATGAT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLNYRSL*SANSHD
Trigger: ATCATGACTATTTGCTGATCACAGAGAACGGTAGTT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATTCTGGCTGAAATATTaGTGCCTTTTCCTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQFWLKY*CLFLLG
Trigger: TCCAAGCAGGAAAAGGCATCAATATTTCAGCCAGAA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATGAAACGTTCTGGCTaGAATATTGATGCCTTTTCC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLMKRSG*NIDAFS
Trigger: GGAAAAGGCATCAATATTTCAGCCAGAACGTTTCAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATGTTGAGGGTGCTGTaGATTCCATCAGGAATAAGA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYMLRVL*IPSGIR
Trigger: TCTTATTCCTGATGGAATTCACAGCACCCTCAACAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGGTAACTTGCTGTCTTaGAAACTTCCAATCAATGGA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLGNLLS*KLPING
Trigger: TCCATTGATTGGAAGTTTTCAAGACAGCAAGTTACC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCATCACAGTAATAGGTaGCTGTTGACCCCAATTTAT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLHHSNR*LLTPIY
Trigger: ATAAATTGGGGTCAACAGTCACCTATTACTGTGATG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGATACAAGTGAGTGTTaGATAACCTTGGAGAACATA +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFDTSEC*ITLENI
Trigger: TATGTTCTCCAAGGTTATTCAACACTCACTTGTATC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAATCGAATTGTGATCTaGTTACCTGAACTCAGTGGA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLNRIVI*LPELSG
Trigger: TCCACTGAGTTCAGGTAATCAGATCACAATTCGATT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCGGTATTGTTGTTCCTaGATAACTTCCAAGTCTCGG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNRYCCS*ITSKSR
Trigger: CCGAGACTTGGAAGTTATTCAGGAACAACAATACCG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGTATTGCCACTGAATTaGCCAATTTGGGGTGAATTT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLVLPLN*PIWGEF
Trigger: AAATTCACCCCAAATTGGTCAATTCAGTGGCAATAC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAACCCTGGAAGACACTaGTATCTGATAATATCGCCT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVNPGRH*YLIISP
Trigger: AGGCGATATTATCAGATATCAGTGTCTTCCAGGGTT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATAAGCACTGGACTCTaGATATTTGGTCCATCATAC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLISTGL*IFGPSY
Trigger: GTATGATGGACCAAATATTCAGAGTCCAGTGCTTAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATTCTCCATCTTCCATaGTCCAAGGTAAAGGAATTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLILHLP*SKVKEL
Trigger: CAATTCCTTTACCTTGGATCATGGAAGATGGAGAAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCATTGTCCATTTGGCTaGCATATCAAAACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLHCPFG*HIKTEE
Trigger: CTCTTCAGTTTTGATATGTCAGCCAAATGGACAATG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCCAAATGTGTTGTTTTaGGATCCATGCCTTGGTACT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVPNVLF*DPCLGT
Trigger: AGTACCAAGGCATGGATCTCAAAACAACACATTTGG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTACAGATGGGTATATTTaGAGACCATTGGTTATTCTC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFTDGYI*RPLVIL
Trigger: GAGAATAACCAATGGTCTGCAAATATACCCATCTGT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGTTATTTGTTGCAGATaGACCACATTCAGCCACACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYVICCR*TTFSHT
Trigger: TGTGTGGCTGAATGTGGTGCATCTGCAACAAATAAC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGTTATTTGTTGCAGATaGACCACATTCAGCCACACA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQVICCR*TTFSHT
Trigger: TGTGTGGCTGAATGTGGTGCATCTGCAACAAATAAC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAAAGCACCCAGTAGGTaGGTTGTTTTATCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLKAPSR*VVLSFP
Trigger: TGGAAAAGATAAAACAACGCACCTACTGGGTGCTTT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGCATGGTATTCGAGCTaGTCTCTATTCTTTCTGGTA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQAWYSS*SLFFLV
Trigger: TACCAGAAAGAATAGAGAGCAGCTCGAATACCATGC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGCATGGTATTCGAGCTaGTCTCTATTCTTTCTGGTA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVAWYSS*SLFFLV
Trigger: TACCAGAAAGAATAGAGAGCAGCTCGAATACCATGC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTTGGTGATAGCACTGTaGCTTCTGAACCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLVIAL*LLNLLN
Trigger: GTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTTGGTGATAGCACTGTaGCTTCTGAACCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLVIAL*LLNLLN
Trigger: GTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAA...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGCTTTATTGTCCATGTaGAATCTAAGCTGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNALLSM*NLSCWG
Trigger: ACCCCAGCAGCTTAGATTGCACATGGACAATAAAGC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGTTATTGCCATGATCTaGAGACCATTGAAGAAATAC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFVIAMI*RPLKKY
Trigger: GTATTTCTTCAATGGTCTGCAGATCATGGCAATAAC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGAGAACGCTTTCCTGTaGAGGAATAGTGAACTGTTG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNENAFL*RNSELL
Trigger: CAACAGTTCACTATTCCTGCACAGGAAAGCGTTCTC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGGACAGCTCATATCCTaGAGAACAGATGTAGCTAAT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYGQLIS*RTDVAN
Trigger: ATTAGCTACATCTGTTCTGCAGGATATGAGCTGTCC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTACAACTGTGAGGTATaGACTCAGGTTGAATTCCAC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVYNCEV*TQVEFH
Trigger: GTGGAATTCAACCTGAGTGCATACCTCACAGTTGTA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCAATGGCCACAGAACTaGTATTTGTACCATGAGGCT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLQWPQN*YLYHEA
Trigger: AGCCTCATGGTACAAATAGCAGTTCTGTGGCCATTG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTACAGTTCGCACCATTTaGATATCCATATGGAAAACC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLTVRTI*ISIWKT
Trigger: GGTTTTCCATATGGATATCCAAATGGTGCGAACTGT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGTGAGAACACAGATTTaGTACTTGTCACTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNVRTQI*YLSLVV
Trigger: CACCACCAGTGACAAGTACCAAATCTGTGTTCTCAC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGCTGTCATACTGGAATaGAAAGTTGGGAGATGTAAA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLAVILE*KVGRCK
Trigger: TTTACATCTCCCAACTTTCCATTCCAGTATGACAGC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTATTTCCATAACCTTCTaGATAATCAGGGGAAAGGAC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLISITF*IIRGKD
Trigger: GTCCTTTCCCCTGATTATCCAGAAGGTTATGGAAAT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTCCAGTCGCAGTATGTaGCTGTTACTAGTAAGATGG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNSSRSM*LLLVRW
Trigger: CCATCTTACTAGTAACAGCCACATACTGCGACTGGA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGGGTATTCCAGGATCTaGGCATTCATTATGTCCAAA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQGYSRI*AFIMSK
Trigger: TTTGGACATAATGAATGCCCAGATCCTGGAATACCC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTGCACACCTTTTCCATaGGTGACATCAACTGTCCAT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLCTPFP*VTSTVH
Trigger: ATGGACAGTTGATGTCACCCATGGAAAAGGTGTGCA...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGTTCAATGGGTAATTTaGAGAGAGGAGAATTCCCTC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYVQWVI*REENSL
Trigger: GAGGGAATTCTCCTCTCTCCAAATTACCCATTGAAC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCTTATATCCAAACTGTaGAATGCCTGGGTCTTCACA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVLISKL*NAWVFT
Trigger: TGTGAAGACCCAGGCATTCCACAGTTTGGATATAAG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTGGACTATTACTGTCTaGGCCATCATATATGTAGAG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLWTITV*AIIYVE
Trigger: CTCTACATATATGATGGCCCAGACAGTAATAGTCCA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTAAAACTTCCAATCAATaGACTATTACTGTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLKTSNQ*TITVWA
Trigger: GGCCCAGACAGTAATAGTCCATTGATTGGAAGTTTT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGAAAAGCCAAGTGCATaGTATTCGAGCTGCTCTCTA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNEKPSA*YSSCSL
Trigger: TAGAGAGCAGCTCGAATACCATGCACTTGGCTTTTC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTACCTCAACAACATCGTaGAGTGATGTCTGGAAAAAT +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLTSTTS*SDVWKN
Trigger: ATTTTTCCAGACATCACTCCACGATGTTGTTGAGGT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTACTGAGCCAAACAAATaGGGATTGGATAATTCCATC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLTEPNK*GLDNSI
Trigger: GATGGAATTATCCAATCCCCATTTGTTTGGCTCAGT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGCTAAACAGAGAAGATaGTATTTGCGGACCACTAAG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYAKQRR*YLRTTK
Trigger: CTTAGTGGTCCGCAAATACCATCTTCTCTGTTTAGC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGCTAAACAGAGAAGATaGTATTTGCGGACCACTAAG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQAKQRR*YLRTTK
Trigger: CTTAGTGGTCCGCAAATACCATCTTCTCTGTTTAGC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGAGAGAAATAAGCACTaGACTCTGAATATTTGGTCC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLERNKH*TLNIWS
Trigger: GGACCAAATATTCAGAGTCCAGTGCTTATTTCTCTC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTATTAGTTGGGGCTTTTaGAATTCCACAAGAAATTGC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFISWGF*NSTRNC
Trigger: GCAATTTCTTGTGGAATTCCAAAAGCCCCAACTAAT...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGATTCACAATGAGTTCTaGAATTCCACAGTGACCCGC +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLIHNEF*NSTVTR
Trigger: GCGGGTCACTGTGGAATTCCAGAACTCATTGTGAAT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTGTTCTTCCATAAATTaGACTACCAGGGTGACCACA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVCSSIN*TTRVTT
Trigger: TGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTGTTCTTCCATAAATTaGACTACCAGGGTGACCACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYCSSIN*TTRVTT
Trigger: TGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGGAAAGACTTTCCCATTaGCTGTTGTTCCTGGATTAC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVERLSH*LLFLDY
Trigger: GTAATCCAGGAACAACAGCCAATGGGAAAGTCTTTC...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACATTGGCTGGTATACCTaGGTCTCCACAACTGATGAT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNIGWYT*VSTTDD
Trigger: ATCATCAGTTGTGGAGACCCAGGTATACCAGCCAAT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATCCATTTAACTCTATaGTATAGCCTGGCTGGCACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYIHLTL*YSLAGT
Trigger: TGTGCCAGCCAGGCTATACCATAGAGTTAAATGGAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTTGAGATCCATGCCTTaGTACTCCAGGGTTTTCACA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLRSMP*YSRVFT
Trigger: TGTGAAAACCCTGGAGTACCAAGGCATGGATCTCAA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTGTCCCTTTTTGCAGTaGAACTGCACAACACTTCCT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNCPFLQ*NCTTLP
Trigger: AGGAAGTGTTGTGCAGTTCCACTGCAAAAAGGGACA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAATGAGCAGGACTTTCTaGTTGTTTACAACTGTGAGG +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQMSRTF*LFTTVR
Trigger: CCTCACAGTTGTAAACAACCAGAAAGTCCTGCTCAT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATGAGCAGGACTTTCTaGTTGTTTACAACTGTGAGG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYMSRTF*LFTTVR
Trigger: CCTCACAGTTGTAAACAACCAGAAAGTCCTGCTCAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCTGTGTACTGTGTTTTaGGTGCAGTCCTTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYLCTVF*VQSFVC
Trigger: ACAAACAAAGGACTGCACCCAAAACACAGTACACAG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACATAGAACTGCCCAATTaGAAGTTGTCTCCAAAGCGA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNIELPN*KLSPKR
Trigger: TCGCTTTGGAGACAACTTTCAATTGGGCAGTTCTAT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGAAAAGTGTGGAAGTTaGACTGCACACCTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNEKCGS*TAHLFH
Trigger: ATGGAAAAGGTGTGCAGTTCAACTTCCACACTTTTC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTTCTGGCTGAAATATTaGTGCCTTTTCCTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNFWLKY*CLFLLG
Trigger: TCCAAGCAGGAAAAGGCATCAATATTTCAGCCAGAA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAGTGACCTTGGTCACTaGTCTTATATCCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLSDLGH*SYIQTV
Trigger: CACAGTTTGGATATAAGATCAGTGACCAAGGTCACT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCGAATCCAGATTTGCTaGTATAAAAGTCCGTATCAA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLRIQIC*YKSPYQ
Trigger: TTGATACGGACTTTTATATCAGCAAATCTGGATTCG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTACTGAACTTGAAAACTaGATTGCGAATCCAGATTTG +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLTELEN*IANPDL
Trigger: CAAATCTGGATTCGCAATTCAGTTTTCAAGTTCAGT...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATTCTTTCTTGTCCTTaGAGCTCATATCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYILSCP*SSYPGS
Trigger: TGATCCTGGATATGAGCTTCAAGGACAAGAAAGAAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGGTAACTTGCTGTCTTaGAAACTTCCAATCAATGGA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYGNLLS*KLPING
Trigger: TCCATTGATTGGAAGTTTTCAAGACAGCAAGTTACC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAATGTTATGGGTCCAACTaGAGTGAATCGAATTGTGAT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQCYGSN*SESNCD
Trigger: ATCACAATTCGATTCACTTCAGTTGGACCCATAACA...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTGTTATGGGTCCAACTaGAGTGAATCGAATTGTGAT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVCYGSN*SESNCD
Trigger: ATCACAATTCGATTCACTTCAGTTGGACCCATAACA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGTATTGCCACTGAATTaGCCAATTTGGGGTGAATTT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYVLPLN*PIWGEF
Trigger: AAATTCACCCCAAATTGGTCAATTCAGTGGCAATAC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGAACCCTGGAAGACACTaGTATCTGATAATATCGCCT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLNPGRH*YLIISP
Trigger: AGGCGATATTATCAGATATCAGTGTCTTCCAGGGTT...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAACCCTGGAAGACACTaGTATCTGATAATATCGCCT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNNPGRH*YLIISP
Trigger: AGGCGATATTATCAGATATCAGTGTCTTCCAGGGTT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGGTCCATCATACACCTaGAGAACATCAAACTCCTTT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLGPSYT*RTSNSF
Trigger: AAAGGAGTTTGATGTTCTTCAGGTGTATGATGGACC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTTACATTAAAAGCAGCTaGATAATCTCCACTGAGAGA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLYIKSS*IISTER
Trigger: TCTCTCAGTGGAGATTATTCAGCTGCTTTTAATGTA...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATGATAGCCATAGGATaGTTTTCTGCAAACAGCACT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYMIAIG*FSANST
Trigger: AGTGCTGTTTGCAGAAAATCATCCTATGGCTATCAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATGATAGCCATAGGATaGTTTTCTGCAAACAGCACT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVMIAIG*FSANST
Trigger: AGTGCTGTTTGCAGAAAATCATCCTATGGCTATCAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATTCTCCATCTTCCATaGTCCAAGGTAAAGGAATTG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVILHLP*SKVKEL
Trigger: CAATTCCTTTACCTTGGATCATGGAAGATGGAGAAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCATTGTCCATTTGGCTaGCATATCAAAACTGAAGAG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYHCPFG*HIKTEE
Trigger: CTCTTCAGTTTTGATATGTCAGCCAAATGGACAATG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCCAGGCAAGAATAGATaGCAGAACTGGAAAATGTTG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNPGKNR*QNWKML
Trigger: CAACATTTTCCAGTTCTGTCATCTATTCTTGCCTGG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGCTGTTTCCTTCCTTTaGAATTATAAGAGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYAVSFL*NYKSLS
Trigger: GGAAAGGCTCTTATAATTTCAAAGGAAGGAAACAGC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAAGCATCTTCAGCTCTaGAAATTGGAACAGGGAAAT +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVKHLQL*KLEQGN
Trigger: ATTTCCCTGTTCCAATTTGCAGAGCTGAAGATGCTT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACTGTACTTTGTGTATCTaGTTGATGAGGAGAAAGCTG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYCTLCI*LMRRKL
Trigger: CAGCTTTCTCCTCATCAAGCAGATACACAAAGTACA...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAAAGCACCCAGTAGGTaGGTTGTTTTATCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQKAPSR*VVLSFP
Trigger: TGGAAAAGATAAAACAACGCACCTACTGGGTGCTTT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAAAGCACCCAGTAGGTaGGTTGTTTTATCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYKAPSR*VVLSFP
Trigger: TGGAAAAGATAAAACAACGCACCTACTGGGTGCTTT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACTTCGATCATCCACATaGAGCGAAGGTTATTATCAT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQLRSST*SEGYYH
Trigger: ATGATAATAACCTTCGCTGCATGTGGATGATCGAAG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCACTCTTGTCTCATGATACAAAAGTGAGACCCTTCACAGAACAATCCAGATTTGATTTTCTACCTGAATaGAGGTTATTCTTTCTTGTC +
Preference number: 4 (lower is better)
Translates to: ALLSHDTKVRPFTEQSRFDFLPE*RLFFLV
Trigger: GACAAGAAAGAATAACCTGCATTCAGGTAGAAAATC...AAATCTGGATTGTTCTGTGAAGGGTCTCACTTTTGTATCATGAGACAAGAGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACCAACTGCAAAGTCATTaGCAATCCTTCTTCCAAATC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYQLQSH*QSFFQI
Trigger: GATTTGGAAGAAGGATTGGCAATGACTTTGCAGTTG...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGCAACTGCAAAGTCATTaGCAATCCTTCTTCCAAATC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVQLQSH*QSFFQI
Trigger: GATTTGGAAGAAGGATTGGCAATGACTTTGCAGTTG...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACAAGGAATCATTCCACTaGGCCAAAGAATTGGGTACT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNKESFH*AKELGT
Trigger: AGTACCCAATTCTTTGGCGCAGTGGAATGATTCCTT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAATGGTACCATTCATTaGAGTTATATTCCCGCCACA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYNGTIH*SYIPAT
Trigger: TGTGGCGGGAATATAACTGCAATGAATGGTACCATT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGAATGGTACCATTCATTaGAGTTATATTCCCGCCACA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVNGTIH*SYIPAT
Trigger: TGTGGCGGGAATATAACTGCAATGAATGGTACCATT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTGTTATTGCCATGATCTaGAGACCATTGAAGAAATAC +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLVIAMI*RPLKKY
Trigger: GTATTTCTTCAATGGTCTGCAGATCATGGCAATAAC...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAGCCTTTCTTGTTATTaGCATGATCTGCAGACCATT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYSLSCY*HDLQTI
Trigger: AATGGTCTGCAGATCATGGCAATAACAAGAAAGGCT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGGACAGCTCATATCCTaGAGAACAGATGTAGCTAAT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLGQLIS*RTDVAN
Trigger: ATTAGCTACATCTGTTCTGCAGGATATGAGCTGTCC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTACAACTGTGAGGTATaGACTCAGGTTGAATTCCAC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNYNCEV*TQVEFH
Trigger: GTGGAATTCAACCTGAGTGCATACCTCACAGTTGTA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GATAACAGGGAAATAAGAAAGGTCACAGAATCACCTTCCCATCTGAAGAAACTTCTTCACAGAAGCATGTaGTGGCACTTTAATAAGATA +
Preference number: 4 (lower is better)
Translates to: DNREIRKVTESPSHLKKLLHRSM*WHFNKI
Trigger: TATCTTATTAAAGTGCCAGCACATGCTTCTGTGAAG...AAGTTTCTTCAGATGGGAAGGTGATTCTGTGACCTTTCTTATTTCCCTGTTATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGTACTGTGTTTTGGGTaGAGTCCTTTGTTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYVLCFG*SPLFVK
Trigger: CTTTACAAACAAAGGACTGCACCCAAAACACAGTAC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAACAGTTCGCACCATTTaGATATCCATATGGAAAACC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQTVRTI*ISIWKT
Trigger: GGTTTTCCATATGGATATCCAAATGGTGCGAACTGT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGACAGTTCGCACCATTTaGATATCCATATGGAAAACC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVTVRTI*ISIWKT
Trigger: GGTTTTCCATATGGATATCCAAATGGTGCGAACTGT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGCTGTCATACTGGAATaGAAAGTTGGGAGATGTAAA +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYAVILE*KVGRCK
Trigger: TTTACATCTCCCAACTTTCCATTCCAGTATGACAGC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGATTTCCATAACCTTCTaGATAATCAGGGGAAAGGAC +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVISITF*IIRGKD
Trigger: GTCCTTTCCCCTGATTATCCAGAAGGTTATGGAAAT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACATTTCCATAACCTTCTaGATAATCAGGGGAAAGGAC +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYISITF*IIRGKD
Trigger: GTCCTTTCCCCTGATTATCCAGAAGGTTATGGAAAT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCTTATATCCAAACTGTaGAATGCCTGGGTCTTCACA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLISKL*NAWVFT
Trigger: TGTGAAGACCCAGGCATTCCACAGTTTGGATATAAG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAATGGAGAGTATAGCCTaGATTGCATCCATAGATGAT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQMESIA*IASIDD
Trigger: ATCATCTATGGATGCAATCCAGGCTATACTCTCCAT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTGGACTATTACTGTCTaGGCCATCATATATGTAGAG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVWTITV*AIIYVE
Trigger: CTCTACATATATGATGGCCCAGACAGTAATAGTCCA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGCAGTCTTGGAAGTTTaGATATTCATCAGGATAGCC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNAVLEV*IFIRIA
Trigger: GGCTATCCTGATGAATATCCAAACTTCCAAGACTGC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCAGTGTAAACCCTaGAAGACACTGATATCTGAT +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQNQCKP*KTLISD
Trigger: ATCAGATATCAGTGTCTTCCAGGGTTTACACTGGTT...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGAGAGAAATAAGCACTaGACTCTGAATATTTGGTCC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQERNKH*TLNIWS
Trigger: GGACCAAATATTCAGAGTCCAGTGCTTATTTCTCTC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGGATTCCTCCATTAGTTaGGGCTTTTGGAATTCCACA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLDSSIS*GFWNST
Trigger: TGTGGAATTCCAAAAGCCCCAACTAATGGAGGAATC...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACATGAGCAGGACTTTCTaGTTGTTTACAACTGTGAGG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNMSRTF*LFTTVR
Trigger: CCTCACAGTTGTAAACAACCAGAAAGTCCTGCTCAT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTGTACTGTGTTTTaGGTGCAGTCCTTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNLCTVF*VQSFVC
Trigger: ACAAACAAAGGACTGCACCCAAAACACAGTACACAG...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR CCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCTGTGTACTGTGTTTTaGGTGCAGTCCTTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLCTVF*VQSFVC
Trigger: ACAAACAAAGGACTGCACCCAAAACACAGTACACAG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
3UTR CAA 72 bp CAGAATGCCAGGTTGAGGTGGGCAATCATATTACTTTaGTGGCATCAATTCACCCATAAATATTTAAAGTGT +
Preference number: 4 (lower is better)
Translates to: QNARLRWAIILL*WHQFTHKYLKC
Trigger: ACACTTTAAATATTTATGGGTGAATTGATGCCACAAAAGTAATATGATTGCCCACCTCAACCTGGCATTCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTTTCTATGGTGCCATTaGGTCCTTTTAAAGTTCCAC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNFLWCH*VLLKFH
Trigger: GTGGAACTTTAAAAGGACTCAATGGCACCATAGAAA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAGCAAGAAAGTCAAATTaGGATTCCAGATCAAAGTCA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQARKSN*DSRSKS
Trigger: TGACTTTGATCTGGAATCTCAATTTGACTTTCTTGC...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACGAATCCAGATTTGCTaGTATAAAAGTCCGTATCAA +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQRIQIC*YKSPYQ
Trigger: TTGATACGGACTTTTATATCAGCAAATCTGGATTCG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGACTGAACTTGAAAACTaGATTGCGAATCCAGATTTG +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVTELEN*IANPDL
Trigger: CAAATCTGGATTCGCAATTCAGTTTTCAAGTTCAGT...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACATTCTTTCTTGTCCTTaGAGCTCATATCCAGGATCA +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNILSCP*SSYPGS
Trigger: TGATCCTGGATATGAGCTTCAAGGACAAGAAAGAAT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACGTAATAGGTGACTGTTaGCCCCAATTTATAATCCAT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYVIGDC*PQFIIH
Trigger: ATGGATTATAAATTGGGGTCAACAGTCACCTATTAC...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACTGTTATGGGTCCAACTaGAGTGAATCGAATTGTGAT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNCYGSN*SESNCD
Trigger: ATCACAATTCGATTCACTTCAGTTGGACCCATAACA...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGTACAAGCTGGTTTCATaGGTTGTGCTAAACAGAGAA +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLYKLVS*VVLNRE
Trigger: TTCTCTGTTTAGCACAACTCATGAAACCAGCTTGTA...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GAAATTAGGAATTTAATGCCTGGGATAAACAGAATGAACTGCAGATTTGTGGTGTACATTAAAAGCAGCTaGATAATCTCCACTGAGAGA +
Preference number: 4 (lower is better)
Translates to: EIRNLMPGINRMNCRFVVYIKSS*IISTER
Trigger: TCTCTCAGTGGAGATTATTCAGCTGCTTTTAATGTA...CACCACAAATCTGCAGTTCATTCTGTTTATCCCAGGCATTAAATTCCTAATTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CTGGCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAACAATGTATCTTATCCTaGAGCCTTTCTTGTTATTGC +
Preference number: 4 (lower is better)
Translates to: LAVPDTYFLKIGYRQNIQQCILS*SLSCYC
Trigger: GCAATAACAAGAAAGGCTTCAGGATAAGATACATTG...TTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGCCAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACATGATAGCCATAGGATaGTTTTCTGCAAACAGCACT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNMIAIG*FSANST
Trigger: AGTGCTGTTTGCAGAAAATCATCCTATGGCTATCAT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACATTCTCCATCTTCCATaGTCCAAGGTAAAGGAATTG +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNILHLP*SKVKEL
Trigger: CAATTCCTTTACCTTGGATCATGGAAGATGGAGAAT...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000100670.10
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGTCCACAGTCAATCATaGTACATTCTGGTAAAGGTT +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNVHSQS*YILVKV
Trigger: AACCTTTACCAGAATGTATCATGATTGACTGTGGAC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp CAAAGAGAAGCCAGTGATCTATTGACTCTGGTAAGTATAGCTCTTATTTTCTACAGAATTGCAGCTGAATaGAACCTCAGACTGATATAT +
Preference number: 4 (lower is better)
Translates to: QREASDLLTLVSIALIFYRIAAE*NLRLIY
Trigger: ATATATCAGTCTGAGGTTTCATTCAGCTGCAATTCT...GTAGAAAATAAGAGCTATACTTACCAGAGTCAATAGATCACTGGCTTCTCTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000161653.2
ENSMUST00000162830.8
CDS-3UTR TCA 90 bp GCTGTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACGCTGTTTCCTTCCTTTaGAATTATAAGAGCCTTTCC +
Preference number: 4 (lower is better)
Translates to: AVPDTYFLKIGYRQNIQNAVSFL*NYKSLS
Trigger: GGAAAGGCTCTTATAATTTCAAAGGAAGGAAACAGC...GTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTACAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000100670.10
ENSMUST00000160658.8
ENSMUST00000162830.8
CDS-3UTR GCA 90 bp GTACCTGATACCTACTTCTTAAAAATAGGGTATAGACAGAACATTCAAAACCTGCTGTCTGTAACAAAATaGAGTCTGAGCCAGTTTTTG +
Preference number: 4 (lower is better)
Translates to: VPDTYFLKIGYRQNIQNLLSVTK*SLSQFL
Trigger: CAAAAACTGGCTCAGACTGCATTTTGTTACAGACAG...CAGGTTTTGAATGTTCTGTCTATACCCTATTTTTAAGAAGTAGGTATCAGGTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts: