Pregenerated sensors for CSGALNACT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042042Ensembl transcript IDs: ENSMUST00000049344.15
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTACAAAGGAGATACTGGCTCTGCTTATTCTGCAGAAAGCACTTTATACATCTTCTGAAGTCAAATGATTaGCTTAGTGGTCAGCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: VQRRYWLCLFCRKHFIHLLKSND*LSGQQA Trigger: TGCCTGCTGACCACTAAGTCAATCATTTGACTTCAG...AAGATGTATAAAGTGCTTTCTGCAGAATAAGCAGAGCCAGTATCTCCTTTGTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| 3UTR-3UTR GCA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCATACATCAAGACACCTaGGTTTTCTTCTTACATCAA | + |
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Preference number: 2 (lower is better) Translates to: VFTINKCVQRRYWLCLFCIHQDT*VFFLHQ Trigger: TTGATGTAAGAAGAAAACGCAGGTGTCTTGATGTAT...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| 3UTR-3UTR GCA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCAGCCATACAAAACCATaGTATAACGTTCATATCTTC | + |
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Preference number: 2 (lower is better) Translates to: VFTINKCVQRRYWLCLFCSHTKP*YNVHIF Trigger: GAAGATATGAACGTTATAGCATGGTTTTGTATGGCT...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR GCA 90 bp | ACATTAGCCTCGTATACTCCAGGACCAATCAGAACACAGGTACCAGGCAGAATCGTGCCTGCTCTCTGTTaGCAGGATAGCCTACGCCGT | + |
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Preference number: 4 (lower is better) Translates to: TLASYTPGPIRTQVPGRIVPALC*QDSLRR Trigger: ACGGCGTAGGCTATCCTGGCAACAGAGAGCAGGCAC...GATTCTGCCTGGTACCTGTGTTCTGATTGGTCCTGGAGTATACGAGGCTAATGT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | GTACAAAGGAGATACTGGCTCTGCTTATTCTGCAGAAAGCACTTTATACATCTTCGACTCCATACTCACTaGGGAGTTTGGCCCCCACGC | + |
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Preference number: 4 (lower is better) Translates to: VQRRYWLCLFCRKHFIHLRLHTH*GVWPPR Trigger: GCGTGGGGGCCAAACTCCCCAGTGAGTATGGAGTCG...AAGATGTATAAAGTGCTTTCTGCAGAATAAGCAGAGCCAGTATCTCCTTTGTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCCCCAACAGCAGCCACTaGGTCCGGCTGTGCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: VFTINKCVQRRYWLCLFCPNSSH*VRLCRI Trigger: GATTCTGCACAGCCGGACCCAGTGGCTGCTGTTGGG...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | TCTAGAGTTGGAATTAAGGCTGAATTAACAGTGCTGGTTTGTGCTTCCGACTCTGGCTTTTCTTCAGGATaGCGAGTGAGACCCATTTCC | + |
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Preference number: 4 (lower is better) Translates to: SRVGIKAELTVLVCASDSGFSSG*RVRPIS Trigger: GGAAATGGGTCTCACTCGCCATCCTGAAGAAAAGCC...AGAGTCGGAAGCACAAACCAGCACTGTTAATTCAGCCTTAATTCCAACTCTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR TCA 90 bp | GTACAAAGGAGATACTGGCTCTGCTTATTCTGCAGAAAGCACTTTATACATCTTCTTCAGGATGGCGAGTaGGACCCATTTCCAACTGAA | + |
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Preference number: 4 (lower is better) Translates to: VQRRYWLCLFCRKHFIHLLQDGE*DPFPTE Trigger: TTCAGTTGGAAATGGGTCTCACTCGCCATCCTGAAG...AAGATGTATAAAGTGCTTTCTGCAGAATAAGCAGAGCCAGTATCTCCTTTGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | TATAACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACGCATTTCCATCAGTCTaGGGGGCACATTCCAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: YNVHIFYASGLYKKTFPNAFPSV*GAHSRR Trigger: CCTCCTGGAATGTGCCCCCCAGACTGATGGAAATGC...GTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTTATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | AACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACAACTCTAAGAGGTCACTaGGTGCCTGCTCTCTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: NVHIFYASGLYKKTFPNTTLRGH*VPALCC Trigger: GCAACAGAGAGCAGGCACCCAGTGACCTCTTAGAGT...TGTGTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR TCA 90 bp | TCACTGGTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTACCAGAGTCCTTTTTATaGACCAGCTGCTGCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: SLVFTINKCVQRRYWLCLPESFL*TSCCST Trigger: TGTGGAGCAGCAGCTGGTTCATAAAAAGGACTCTGG...TAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGACCAGTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | TCTAGAGTTGGAATTAAGGCTGAATTAACAGTGCTGGTTTGTGCTTCCGACTCTTCAGACTGGTTGCCCTaGTTTGGTAATGTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SRVGIKAELTVLVCASDSSDWLP*FGNVLL Trigger: AAGAAGAACATTACCAAACCAGGGCAACCAGTCTGA...AGAGTCGGAAGCACAAACCAGCACTGTTAATTCAGCCTTAATTCCAACTCTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | AACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACATTTAGCTGGGCAATCTaGCGTTTCAGACTGGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: NVHIFYASGLYKKTFPNTFSWAI*RFRLVA Trigger: GGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAA...TGTGTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR GCA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCAGGGGTCAGCTCATCTaGACAATGTTTCTCATGCCA | + |
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Preference number: 4 (lower is better) Translates to: VFTINKCVQRRYWLCLFCRGQLI*TMFLMP Trigger: TGGCATGAGAAACATTGTGCAGATGAGCTGACCCCT...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | AACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACATCTGGCGTTTCAGACTaGTTGCCCTGGTTTGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: NVHIFYASGLYKKTFPNTSGVSD*LPWFGN Trigger: ATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGA...TGTGTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR TCA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCCTATCGATCTGGGAGTaGAGAAACTCTAAGAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: VFTINKCVQRRYWLCLFCLSIWE*RNSKRS Trigger: TGACCTCTTAGAGTTTCTTCACTCCCAGATCGATAG...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR GCA 90 bp | TATAACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACGCGTTTCAGACTGGTTaGCCTGGTTTGGTAATGTTC | + |
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Preference number: 4 (lower is better) Translates to: YNVHIFYASGLYKKTFPNAFQTG*PGLVMF Trigger: GAACATTACCAAACCAGGGCAACCAGTCTGAAACGC...GTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTTATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCGAAAAGACCGGGAACTaGAGTCCGAATCACAATAAG | + |
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Preference number: 4 (lower is better) Translates to: VFTINKCVQRRYWLCLFCEKTGN*SPNHNK Trigger: CTTATTGTGATTCGGACTCCAGTTCCCGGTCTTTTC...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR GCA 90 bp | TATAACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACAGTTCATACTGCGTaGCTTTATCTCTCTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: YNVHIFYASGLYKKTFPNTVHTA*LYLSQC Trigger: GCACTGAGAGAGATAAAGGCACGCAGTATGAACTGT...GTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTTATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCAATTCTTGCTTTAGCTaGGCAATCTGGCGTTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: VFTINKCVQRRYWLCLFCNSCFS*AIWRFR Trigger: TCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATT...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CCA 90 bp | GTACAAAGGAGATACTGGCTCTGCTTATTCTGCAGAAAGCACTTTATACATCTTTTTGTCTTTTCTAACTaGCTTTTCTTCAGGATGGCG | + |
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Preference number: 4 (lower is better) Translates to: VQRRYWLCLFCRKHFIHLFVFSN*LFFRMA Trigger: CGCCATCCTGAAGAAAAGCCAGTTAGAAAAGACAAA...AAGATGTATAAAGTGCTTTCTGCAGAATAAGCAGAGCCAGTATCTCCTTTGTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CCA 90 bp | ATTCTTGCTTTAGCTGGGCAATCTGGCGTTTCAGACTGGTTGCCCTaGTTTGGTAATGTTCTTCTTGCTCCTGCAGGAGGGCCTGGTAAT | + |
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Preference number: 5 (lower is better) Translates to: ILALAGQSGVSDWLP*FGNVLLAPAGGPGN Trigger: ATTACCAGGCCCTCCTGCAGGAGCAAGAAGAACATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CCA 90 bp | TATCTTGTAATTCTTGCTTTAGCTGGGCAATCTGGCGTTTCAGACTaGTTGCCCTGGTTTGGTAATGTTCTTCTTGCTCCTGCAGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: YLVILALAGQSGVSD*LPWFGNVLLAPAGG Trigger: CCCTCCTGCAGGAGCAAGAAGAACATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATTACAAGATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS GCA 90 bp | CTCTCTTGCAAGGCTCTCATCTTCTCACTCATATCTTGTAATTCTTaGTTTAGCTGGGCAATCTGGCGTTTCAGACTGGTTGCCCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LSCKALIFSLISCNS*FSWAIWRFRLVALV Trigger: AACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATTACAAGATATGAGTGAGAAGATGAGAGCCTTGCAAGAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CAA 90 bp | AACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACATACTCACTGGGGAGTTaGGCCCCCACGCTAACTTCA | + |
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Preference number: 5 (lower is better) Translates to: NVHIFYASGLYKKTFPNTYSLGS*APTLTS Trigger: TGAAGTTAGCGTGGGGGCCAAACTCCCCAGTGAGTA...TGTGTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CAA 90 bp | TCACTGGTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTGGTAATGTTCTTCTaGCTCCTGCAGGAGGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: SLVFTINKCVQRRYWLCLLVMFF*LLQEGL Trigger: CAGGCCCTCCTGCAGGAGCAAGAAGAACATTACCAA...TAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGACCAGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CAA 90 bp | AACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACAGGCGTTTCAGACTGGTaGCCCTGGTTTGGTAATGTT | + |
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Preference number: 5 (lower is better) Translates to: NVHIFYASGLYKKTFPNTGVSDW*PWFGNV Trigger: AACATTACCAAACCAGGGCAACCAGTCTGAAACGCC...TGTGTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CAA 90 bp | GTCTTTACAATAAATAAGTGTGTACAAAGGAGATACTGGCTCTGCTTATTCTGCACTGGTTGCCCTGGTTaGGTAATGTTCTTCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: VFTINKCVQRRYWLCLFCTGCPG*VMFFLL Trigger: GAGCAAGAAGAACATTACCAAACCAGGGCAACCAGT...GCAGAATAAGCAGAGCCAGTATCTCCTTTGTACACACTTATTTATTGTAAAGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CAA 90 bp | AACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACAATTCATGGCTTTGGATaGGATGCACATTCGGTACTG | + |
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Preference number: 5 (lower is better) Translates to: NVHIFYASGLYKKTFPNTIHGFG*DAHSVL Trigger: CAGTACCGAATGTGCATCCAATCCAAAGCCATGAAT...TGTGTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS-3UTR CAA 90 bp | TATAACGTTCATATCTTCTATGCCTCTGGCTTATATAAAAAGACGTTCCCAAACACCAGTTCGTCTCGTTaGTCTTTTCTAACTGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: YNVHIFYASGLYKKTFPNTSSSR*SFLTGF Trigger: AAAGCCAGTTAGAAAAGACAAACGAGACGAACTGGT...GTTTGGGAACGTCTTTTTATATAAGCCAGAGGCATAGAAGATATGAACGTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CAA 72 bp | CTGGGCAATCTGGCGTTTCAGACTGGTTGCCCTGGTTaGGTAATGTTCTTCTTGCTCCTGCAGGAGGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: LGNLAFQTGCPG*VMFFLLLQEGL Trigger: CAGGCCCTCCTGCAGGAGCAAGAAGAACATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CCA 72 bp | TTAGCTGGGCAATCTGGCGTTTCAGACTGGTTGCCCTaGTTTGGTAATGTTCTTCTTGCTCCTGCAGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: LAGQSGVSDWLP*FGNVLLAPAGG Trigger: CCCTCCTGCAGGAGCAAGAAGAACATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CAA 72 bp | CTTTCAAAGGGAACGACTCCATACTCACTGGGGAGTTaGGCCCCCACGCTAACTTCAGCTCTATCGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: LSKGTTPYSLGS*APTLTSALSIW Trigger: CCAGATCGATAGAGCTGAAGTTAGCGTGGGGGCCAAACTCCCCAGTGAGTATGGAGTCGTTCCCTTTGAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CAA 90 bp | CTTGTAATTCTTGCTTTAGCTGGGCAATCTGGCGTTTCAGACTGGTaGCCCTGGTTTGGTAATGTTCTTCTTGCTCCTGCAGGAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: LVILALAGQSGVSDW*PWFGNVLLAPAGGP Trigger: AGGCCCTCCTGCAGGAGCAAGAAGAACATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATTACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CAA 72 bp | CTTGCTTTAGCTGGGCAATCTGGCGTTTCAGACTGGTaGCCCTGGTTTGGTAATGTTCTTCTTGCTCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: LALAGQSGVSDW*PWFGNVLLAPA Trigger: TGCAGGAGCAAGAAGAACATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CAA 90 bp | ATGACCTCCACGCCAGCTTCAATAACTTCTACCAGTTCGTCTCGTTaGTCTTTTCTAACTGGCTTTTCTTCAGGATGGCGAGTGAGACCC | + |
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Preference number: 6 (lower is better) Translates to: MTSTPASITSTSSSR*SFLTGFSSGWRVRP Trigger: GGGTCTCACTCGCCATCCTGAAGAAAAGCCAGTTAGAAAAGACAAACGAGACGAACTGGTAGAAGTTATTGAAGCTGGCGTGGAGGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CCA 72 bp | ATTCTTGCTTTAGCTGGGCAATCTGGCGTTTCAGACTaGTTGCCCTGGTTTGGTAATGTTCTTCTTGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: ILALAGQSGVSD*LPWFGNVLLAP Trigger: AGGAGCAAGAAGAACATTACCAAACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CCA 72 bp | ATCTTCTCACTCATATCTTGTAATTCTTGCTTTAGCTaGGCAATCTGGCGTTTCAGACTGGTTGCCCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: IFSLISCNSCFS*AIWRFRLVALV Trigger: AACCAGGGCAACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATTACAAGATATGAGTGAGAAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS CAA 72 bp | ACGCCAGCTTCAATAACTTCTACCAGTTCGTCTCGTTaGTCTTTTCTAACTGGCTTTTCTTCAGGATGGCGA | + |
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Preference number: 6 (lower is better) Translates to: TPASITSTSSSR*SFLTGFSSGWR Trigger: TCGCCATCCTGAAGAAAAGCCAGTTAGAAAAGACAAACGAGACGAACTGGTAGAAGTTATTGAAGCTGGCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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| CDS GCA 72 bp | AAGGCTCTCATCTTCTCACTCATATCTTGTAATTCTTaGTTTAGCTGGGCAATCTGGCGTTTCAGACTGGTT | + |
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Preference number: 6 (lower is better) Translates to: KALIFSLISCNS*FSWAIWRFRLV Trigger: AACCAGTCTGAAACGCCAGATTGCCCAGCTAAAGCAAGAATTACAAGATATGAGTGAGAAGATGAGAGCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049344.15 |
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