Pregenerated sensors for CSF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038067Ensembl transcript IDs: ENSMUST00000038886.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCTTTAGGGACTTCGTTCCTGTGAGGACAGGAAACCCTGCAACCTaGTTGACCAGAGCAAGGGATATAAGAACCCAGTTTGGGAACACT | + |
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Preference number: 1 (lower is better) Translates to: FFRDFVPVRTGNPAT*LTRARDIRTQFGNT Trigger: AGTGTTCCCAAACTGGGTTCTTATATCCCTTGCTCTGGTCAACCAGGTTGCAGGGTTTCCTGTCCTCACAGGAACGAAGTCCCTAAAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| 3UTR-3UTR CCA 90 bp | AATATTAAACAGGGATGTCTTGTCCCCCGGAAGGGAGACCAGATGCTGCCTGGGGTACTGCCACAGAACTaGGTGCCTGGAGCAGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: NIKQGCLVPRKGDQMLPGVLPQN*VPGAAA Trigger: TGCTGCTGCTCCAGGCACCCAGTTCTGTGGCAGTAC...CCCAGGCAGCATCTGGTCTCCCTTCCGGGGGACAAGACATCCCTGTTTAATATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| 3UTR CAA 90 bp | TTTAGGGACTTCGTTCCTGTGAGGACAGGAAACCCTGCAACCTGGTaGACCAGAGCAAGGGATATAAGAACCCAGTTTGGGAACACTGCT | + |
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Preference number: 2 (lower is better) Translates to: FRDFVPVRTGNPATW*TRARDIRTQFGNTA Trigger: AGCAGTGTTCCCAAACTGGGTTCTTATATCCCTTGCTCTGGTCAACCAGGTTGCAGGGTTTCCTGTCCTCACAGGAACGAAGTCCCTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| 3UTR-3UTR TCA 90 bp | TGCCACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTGGTATTTACCGGAAGTGGAGAGAATaGTCTAGAAGCTTAGAGCTC | + |
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Preference number: 2 (lower is better) Translates to: CHRTGCLEQQQESILGIYRKWRE*SRSLEL Trigger: GAGCTCTAAGCTTCTAGATCATTCTCTCCACTTCCG...GTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGTGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| 3UTR CCA 72 bp | AACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTaGTATTTACCCATCTCCTTCCCTGGCCTCCACAGG | + |
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Preference number: 3 (lower is better) Translates to: NWVPGAAAGINT*YLPISFPGLHR Trigger: CCTGTGGAGGCCAGGGAAGGAGATGGGTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR TCA 90 bp | TGGCCTCCACAGGAGGACACAAGAGCCTTCTCTCTCTGCTCTAAGCAGGAGAACGCTGGAAGGCAGAAGTaGAGGCTGGCATGGCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: WPPQEDTRAFSLCSKQENAGRQK*RLAWRS Trigger: AGAGCGCCATGCCAGCCTTCACTTCTGCCTTCCAGC...GTTCTCCTGCTTAGAGCAGAGAGAGAAGGCTCTTGTGTCCTCCTGTGGAGGCCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR GCA 90 bp | TGGCCTCCACAGGAGGACACAAGAGCCTTCTCTCTCTGCTCTAAGCAGGAGAACAGGCACTGTGTCTGCTaGAGGGCCTGGCTAGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: WPPQEDTRAFSLCSKQENRHCVC*RAWLEQ Trigger: CTGCTCTAGCCAGGCCCTGCAGCAGACACAGTGCCT...GTTCTCCTGCTTAGAGCAGAGAGAGAAGGCTCTTGTGTCCTCCTGTGGAGGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | TTTGGGGGTACTGCCACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACCCTGCAGGTACGAAATaGCCAGGACACCTCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: FGGTATELGAWSSSRNQYPAGTK*PGHLLP Trigger: GGGCAGGAGGTGTCCTGGCCATTTCGTACCTGCAGG...GTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGTGGCAGTACCCCCAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | GCCTGGAGCAGCAGCAGGAATCAATACTTGGTATTTACCCATCTCCTTCCCTGGCCTCCTGCCCGGCGCTaGAAGGCAGAAGTGAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: AWSSSRNQYLVFTHLLPWPPARR*KAEVKA Trigger: AGCCTTCACTTCTGCCTTCCAGCGCCGGGCAGGAGG...CCAGGGAAGGAGATGGGTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR GCA 90 bp | TTTGGGGGTACTGCCACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTGCCACAGCAGCAGCTaGAGGGCCATTAGCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: FGGTATELGAWSSSRNQYCHSSS*RAISFM Trigger: CATGAAGCTAATGGCCCTGCAGCTGCTGCTGTGGCA...GTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGTGGCAGTACCCCCAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR GCA 90 bp | ACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTGGTATTTACCCATGCGCTCTGTGTGGGCTaGACAGTAGGGGCCACCCCT | + |
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Preference number: 4 (lower is better) Translates to: TELGAWSSSRNQYLVFTHALCVG*TVGATP Trigger: AGGGGTGGCCCCTACTGTGCAGCCCACACAGAGCGC...ATGGGTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | AGGAGGACACAAGAGCCTTCTCTCTCTGCTCTAAGCAGGAGAACAAAACTCGGAGGGCAGAGGCAGGGATaGTGGCAGAGCGCTGACAGT | + |
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Preference number: 4 (lower is better) Translates to: RRTQEPSLSALSRRTKLGGQRQG*WQSADS Trigger: ACTGTCAGCGCTCTGCCACCATCCCTGCCTCTGCCC...TCCGAGTTTTGTTCTCCTGCTTAGAGCAGAGAGAGAAGGCTCTTGTGTCCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | TGCCACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTGGTATTTACGTCTGCTGCAGGGCCTaGCTAGAGCAGCCACTCAGG | + |
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Preference number: 4 (lower is better) Translates to: CHRTGCLEQQQESILGIYVCCRA*LEQPLR Trigger: CCTGAGTGGCTGCTCTAGCCAGGCCCTGCAGCAGAC...GTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGTGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR GCA 90 bp | TGGGGGTACTGCCACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTGGGCCATTAGCTTCATaGGCCTCTGGGCAGAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: WGYCHRTGCLEQQQESILGPLAS*ASGQKV Trigger: AACTTTCTGCCCAGAGGCGCATGAAGCTAATGGCCC...AAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGTGGCAGTACCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | TGGGGGTACTGCCACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTGACACAGCTTGTAGGTaGCACACAACTGCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: WGYCHRTGCLEQQQESILDTACR*HTTAPA Trigger: TGCTGGAGCAGTTGTGTGCCACCTACAAGCTGTGTC...AAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGTGGCAGTACCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| 3UTR CAA 72 bp | GAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTaGGTATTTACCCATCTCCTTCCCTGGCCTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: ELGAWSSSRNQY*VFTHLLPWPPQ Trigger: CTGTGGAGGCCAGGGAAGGAGATGGGTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | ACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTGGTATTTACCCATACCGAGCCGCTGGCCTaGATCTTCCTCACTTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TELGAWSSSRNQYLVFTHTEPLA*IFLTCS Trigger: GGAGCAAGTGAGGAAGATCCAGGCCAGCGGCTCGGT...ATGGGTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | TGGGGGTACTGCCACAGAACTGGGTGCCTGGAGCAGCAGCAGGAATCAATACTTTGGTGGTGGCAAAGTTaGCAACATCCAGCTGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: WGYCHRTGCLEQQQESILWWWQS*QHPAEA Trigger: TGCTTCAGCTGGATGTTGCCAACTTTGCCACCACCA...AAGTATTGATTCCTGCTGCTGCTCCAGGCACCCAGTTCTGTGGCAGTACCCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | AATATTAAACAGGGATGTCTTGTCCCCCGGAAGGGAGACCAGATGCTGCCTGGGGCTGCCAGATGGTGGTaGCAAAGTTGGCAACATCCA | + |
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Preference number: 4 (lower is better) Translates to: NIKQGCLVPRKGDQMLPGAARWW*QSWQHP Trigger: TGGATGTTGCCAACTTTGCCACCACCATCTGGCAGC...CCCAGGCAGCATCTGGTCTCCCTTCCGGGGGACAAGACATCCCTGTTTAATATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR GCA 90 bp | AAACCCTGCAACCTGGTTGACCAGAGCAAGGGATATAAGAACCCAGTTTGGGAACTTAGGCACTGTGTCTaGTGCAGGGCCTGGCTAGAG | + |
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Preference number: 4 (lower is better) Translates to: KPCNLVDQSKGYKNPVWELRHCV*CRAWLE Trigger: CTCTAGCCAGGCCCTGCAGCAGACACAGTGCCTAAG...TTCCCAAACTGGGTTCTTATATCCCTTGCTCTGGTCAACCAGGTTGCAGGGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | AATATTAAACAGGGATGTCTTGTCCCCCGGAAGGGAGACCAGATGCTGCCTGGGTCTGCTGCCAGATGGTaGTGGCAAAGTTGGCAACAT | + |
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Preference number: 4 (lower is better) Translates to: NIKQGCLVPRKGDQMLPGSAARW*WQSWQH Trigger: ATGTTGCCAACTTTGCCACCACCATCTGGCAGCAGA...CCCAGGCAGCATCTGGTCTCCCTTCCGGGGGACAAGACATCCCTGTTTAATATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CCA 90 bp | GCCTGGAGCAGCAGCAGGAATCAATACTTGGTATTTACCCATCTCCTTCCCTGGCCATCTGCTGCCAGATaGTGGTGGCAAAGTTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: AWSSSRNQYLVFTHLLPWPSAAR*WWQSWQ Trigger: TTGCCAACTTTGCCACCACCATCTGGCAGCAGATGG...CCAGGGAAGGAGATGGGTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR GCA 90 bp | CTGGAGCAGCAGCAGGAATCAATACTTGGTATTTACCCATCTCCTTCCCTGGCCTGGATCTTCCTCACTTaGTCCAGGGACTTAAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LEQQQESILGIYPSPSLAWIFLT*SRDLSR Trigger: CCTGCTTAAGTCCCTGGAGCAAGTGAGGAAGATCCA...GGCCAGGGAAGGAGATGGGTAAATACCAAGTATTGATTCCTGCTGCTGCTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR GCA 90 bp | AGGAGGACACAAGAGCCTTCTCTCTCTGCTCTAAGCAGGAGAACAAAACTCGGACCTAGGTTTTCCATCTaGTGCCAGATGGTGGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: RRTQEPSLSALSRRTKLGPRFSI*CQMVVA Trigger: TGCCACCACCATCTGGCAGCAGATGGAAAACCTAGG...TCCGAGTTTTGTTCTCCTGCTTAGAGCAGAGAGAGAAGGCTCTTGTGTCCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS GCA 90 bp | CGTCTCCAGGAAGCCCTGCAGGTACGAAATGGCCAGGACACCTCCTaGCCGGCGCTGGAAGGCAGAAGTGAAGGCTGGCATGGCGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: RLQEALQVRNGQDTS*PALEGRSEGWHGAL Trigger: CAGAGCGCCATGCCAGCCTTCACTTCTGCCTTCCAGCGCCGGGCAGGAGGTGTCCTGGCCATTTCGTACCTGCAGGGCTTCCTGGAGACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CCA 90 bp | AAGCCCTGCAGGTACGAAATGGCCAGGACACCTCCTGCCCGGCGCTaGAAGGCAGAAGTGAAGGCTGGCATGGCGCTCTGTGTGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: KPCRYEMARTPPARR*KAEVKAGMALCVGC Trigger: GCAGCCCACACAGAGCGCCATGCCAGCCTTCACTTCTGCCTTCCAGCGCCGGGCAGGAGGTGTCCTGGCCATTTCGTACCTGCAGGGCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS GCA 90 bp | AACTGCTCCAGCAGCACCGAGCCGCTGGCCTGGATCTTCCTCACTTaGTCCAGGGACTTAAGCAGGAAGCTTCGGGGCAGAGGCAGGGAT | + |
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Preference number: 5 (lower is better) Translates to: NCSSSTEPLAWIFLT*SRDLSRKLRGRGRD Trigger: ATCCCTGCCTCTGCCCCGAAGCTTCCTGCTTAAGTCCCTGGAGCAAGTGAGGAAGATCCAGGCCAGCGGCTCGGTGCTGCTGGAGCAGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CCA 90 bp | TGGTGGTGGCAAAGTTGGCAACATCCAGCTGAAGCAAGTCCAAGGTaGGGGCCAGGGCAGGGGAAATACCCGATAGAGCCTGCAGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: WWWQSWQHPAEASPR*GPGQGKYPIEPAGD Trigger: GTCTCCTGCAGGCTCTATCGGGTATTTCCCCTGCCCTGGCCCCCACCTTGGACTTGCTTCAGCTGGATGTTGCCAACTTTGCCACCACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS TCA 90 bp | TCCATCTGCTGCCAGATGGTGGTGGCAAAGTTGGCAACATCCAGCTaGAGCAAGTCCAAGGTGGGGGCCAGGGCAGGGGAAATACCCGAT | + |
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Preference number: 5 (lower is better) Translates to: SICCQMVVAKLATSS*SKSKVGARAGEIPD Trigger: ATCGGGTATTTCCCCTGCCCTGGCCCCCACCTTGGACTTGCTTCAGCTGGATGTTGCCAACTTTGCCACCACCATCTGGCAGCAGATGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CAA 90 bp | AAACCCTGCAACCTGGTTGACCAGAGCAAGGGATATAAGAACCCAGTTTGGGAAAGCCTGCAGGAGACCTaGGTAGAGGCAGAGCCCACT | + |
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Preference number: 5 (lower is better) Translates to: KPCNLVDQSKGYKNPVWESLQET*VEAEPT Trigger: AGTGGGCTCTGCCTCTACCAAGGTCTCCTGCAGGCT...TTCCCAAACTGGGTTCTTATATCCCTTGCTCTGGTCAACCAGGTTGCAGGGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS-3UTR CAA 90 bp | AAACCCTGCAACCTGGTTGACCAGAGCAAGGGATATAAGAACCCAGTTTGGGAACTGGATCTTCCTCACTaGCTCCAGGGACTTAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: KPCNLVDQSKGYKNPVWELDLPH*LQGLKQ Trigger: CTGCTTAAGTCCCTGGAGCAAGTGAGGAAGATCCAG...TTCCCAAACTGGGTTCTTATATCCCTTGCTCTGGTCAACCAGGTTGCAGGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS TCA 72 bp | CCAGGACACCTCCTGCCCGGCGCTGGAAGGCAGAAGTaGAGGCTGGCATGGCGCTCTGTGTGGGCTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: PGHLLPGAGRQK*RLAWRSVWAAQ Trigger: CTGTGCAGCCCACACAGAGCGCCATGCCAGCCTTCACTTCTGCCTTCCAGCGCCGGGCAGGAGGTGTCCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CCA 72 bp | ACCTCCTGCCCGGCGCTGGAAGGCAGAAGTGAAGGCTaGCATGGCGCTCTGTGTGGGCTGCACAGTAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: TSCPALEGRSEG*HGALCGLHSRG Trigger: GCCCCTACTGTGCAGCCCACACAGAGCGCCATGCCAGCCTTCACTTCTGCCTTCCAGCGCCGGGCAGGAGGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CCA 72 bp | GGACTTAAGCAGGAAGCTTCGGGGCAGAGGCAGGGATaGTGGCAGAGCGCTGACAGTGACCAGGGGAACGGC | + |
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Preference number: 6 (lower is better) Translates to: GLKQEASGQRQG*WQSADSDQGNG Trigger: GCCGTTCCCCTGGTCACTGTCAGCGCTCTGCCACCATCCCTGCCTCTGCCCCGAAGCTTCCTGCTTAAGTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CAA 90 bp | CAACTGCTCCAGCAGCACCGAGCCGCTGGCCTGGATCTTCCTCACTaGCTCCAGGGACTTAAGCAGGAAGCTTCGGGGCAGAGGCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: QLLQQHRAAGLDLPH*LQGLKQEASGQRQG Trigger: TCCCTGCCTCTGCCCCGAAGCTTCCTGCTTAAGTCCCTGGAGCAAGTGAGGAAGATCCAGGCCAGCGGCTCGGTGCTGCTGGAGCAGTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CCA 72 bp | AGGTACGAAATGGCCAGGACACCTCCTGCCCGGCGCTaGAAGGCAGAAGTGAAGGCTGGCATGGCGCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RYEMARTPPARR*KAEVKAGMALC Trigger: ACAGAGCGCCATGCCAGCCTTCACTTCTGCCTTCCAGCGCCGGGCAGGAGGTGTCCTGGCCATTTCGTACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CAA 72 bp | CAGCAGCACCGAGCCGCTGGCCTGGATCTTCCTCACTaGCTCCAGGGACTTAAGCAGGAAGCTTCGGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: QQHRAAGLDLPH*LQGLKQEASGQ Trigger: CTGCCCCGAAGCTTCCTGCTTAAGTCCCTGGAGCAAGTGAGGAAGATCCAGGCCAGCGGCTCGGTGCTGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS GCA 72 bp | AGCAGCACCGAGCCGCTGGCCTGGATCTTCCTCACTTaGTCCAGGGACTTAAGCAGGAAGCTTCGGGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSTEPLAWIFLT*SRDLSRKLRGR Trigger: TCTGCCCCGAAGCTTCCTGCTTAAGTCCCTGGAGCAAGTGAGGAAGATCCAGGCCAGCGGCTCGGTGCTGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CCA 72 bp | GCACACAACTGCTCCAGCAGCACCGAGCCGCTGGCCTaGATCTTCCTCACTTGCTCCAGGGACTTAAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: AHNCSSSTEPLA*IFLTCSRDLSR Trigger: CCTGCTTAAGTCCCTGGAGCAAGTGAGGAAGATCCAGGCCAGCGGCTCGGTGCTGCTGGAGCAGTTGTGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS GCA 72 bp | CGTCCTGACCATAGTGCACTTTGCCACAGCAGCAGCTaGAGGGCCATTAGCTTCATGCGCCTCTGGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: RPDHSALCHSSS*RAISFMRLWAE Trigger: TTCTGCCCAGAGGCGCATGAAGCTAATGGCCCTGCAGCTGCTGCTGTGGCAAAGTGCACTATGGTCAGGACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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| CDS CCA 72 bp | GGGCCACCCCTAGGTTTTCCATCTGCTGCCAGATGGTaGTGGCAAAGTTGGCAACATCCAGCTGAAGCAAGT | + |
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Preference number: 6 (lower is better) Translates to: GPPLGFPSAARW*WQSWQHPAEAS Trigger: ACTTGCTTCAGCTGGATGTTGCCAACTTTGCCACCACCATCTGGCAGCAGATGGAAAACCTAGGGGTGGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038886.3 |
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