RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CSF2RB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071714

Ensembl transcript IDs: ENSMUST00000096356.5, ENSMUST00000230115.3, ENSMUST00000230753.2

Found 265 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTGACCTCCAGGGGGCAGACACATGTACTCCAAGGAGCCTGGCAGTaGTGGCTTCAGGCTCCCACCCACCTGGGGAGAACCCAGCTGGCC +
Preference number: 1 (lower is better)
Translates to: LTSRGQTHVLQGAWQ*WLQAPTHLGRTQLA
Trigger: GGCCAGCTGGGTTCTCCCCAGGTGGGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCCTTGGAGTACATGTGTCTGCCCCCTGGAGGTCAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR GCA 90 bp GGCTCCACGGAAGGGCTCCCTGTGGTCTCCAGGCTGGACCCACACTaGACATCCATAGCCTGGCCCTGTCCCATCACCTGGGACAATGGG +
Preference number: 1 (lower is better)
Translates to: GSTEGLPVVSRLDPH*TSIAWPCPITWDNG
Trigger: CCCATTGTCCCAGGTGATGGGACAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAGGGAGCCCTTCCGTGGAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR GCA 90 bp AGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCGGTaGCAGGCTGCTGGTGAGATTGGGAGGGGACAGACTCAGCACACC +
Preference number: 1 (lower is better)
Translates to: RGFCGDAQAEDHRLR*QAAGEIGRGQTQHT
Trigger: GGTGTGCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 90 bp TTGCACTTGACCTCCAGGGGGCAGACACATGTACTCCAAGGAGCCTaGCAGTGCTGGCTTCAGGCTCCCACCCACCTGGGGAGAACCCAG +
Preference number: 1 (lower is better)
Translates to: LHLTSRGQTHVLQGA*QCWLQAPTHLGRTQ
Trigger: CTGGGTTCTCCCCAGGTGGGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCCTTGGAGTACATGTGTCTGCCCCCTGGAGGTCAAGTGCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR GCA 90 bp GGTGGACAAGCAGACCTCAGGAGTTCTTCAACCCTAAACAGACCATaGAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAG +
Preference number: 1 (lower is better)
Translates to: GGQADLRSSSTLNRP*RAHPHRPPHSNRSE
Trigger: CTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCTGTTTAGGGTTGAAGAACTCCTGAGGTCTGCTTGTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 90 bp CATCATACTGCCCTCAGGGCCCCCAGAGCTTATGGGAAGAGTCATTaGGTTGTCCCTTGCCTCCTGTTTCTCCACGCTCAGCTCAACTGG +
Preference number: 1 (lower is better)
Translates to: HHTALRAPRAYGKSH*VVPCLLFLHAQLNW
Trigger: CCAGTTGAGCTGAGCGTGGAGAAACAGGAGGCAAGGGACAACCCAATGACTCTTCCCATAAGCTCTGGGGGCCCTGAGGGCAGTATGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR CCA 90 bp CATAATCAGAGGCCATCATACTGCCCTCAGGGCCCCCAGAGCTTATaGGAAGAGTCATTGGGTTGTCCCTTGCCTCCTGTTTCTCCACGC +
Preference number: 1 (lower is better)
Translates to: HNQRPSYCPQGPQSL*EESLGCPLPPVSPR
Trigger: GCGTGGAGAAACAGGAGGCAAGGGACAACCCAATGACTCTTCCCATAAGCTCTGGGGGCCCTGAGGGCAGTATGATGGCCTCTGATTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR GCA 90 bp GCAGACCCTCATCTGAGGCCAGTGGGAGCACAGGTATCCAAGCTTTaGTCTGGAGGGAGAACGAATGAACAGCTCAGCTGTCTAGACTTA +
Preference number: 1 (lower is better)
Translates to: ADPHLRPVGAQVSKL*SGGRTNEQLSCLDL
Trigger: TAAGTCTAGACAGCTGAGCTGTTCATTCGTTCTCCCTCCAGAGCAAAGCTTGGATACCTGTGCTCCCACTGGCCTCAGATGAGGGTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR TCA 90 bp TCCCTCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTaGTTTCTGTACATAAGCAGGGTCCCAAGTACCTTCTACAAGGTT +
Preference number: 1 (lower is better)
Translates to: SLQPGHSCVQLCAHQ*FLYISRVPSTFYKV
Trigger: AACCTTGTAGAAGGTACTTGGGACCCTGCTTATGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 90 bp TCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTaGACAAGCAGACCTCAGGAGTTCTTCAACCCTAAACAGACCATG +
Preference number: 1 (lower is better)
Translates to: SHRGRNVLCYHQCLW*TSRPQEFFNPKQTM
Trigger: CATGGTCTGTTTAGGGTTGAAGAACTCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 90 bp TTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATaGTGGACAAGCAGACCTCAGGAGTTCTTCAACCCTAAACAGACC +
Preference number: 1 (lower is better)
Translates to: FSHRGRNVLCYHQCL*WTSRPQEFFNPKQT
Trigger: GGTCTGTTTAGGGTTGAAGAACTCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR TCA 90 bp ATACAAAGGCCATGTGCAAACGTGACCATGAACAAACAAGTCCAGTaGGAACAGAATGAGGTAATGGCATTGTGCCTGGATTGTCAAGAG +
Preference number: 1 (lower is better)
Translates to: IQRPCANVTMNKQVQ*EQNEVMALCLDCQE
Trigger: CTCTTGACAATCCAGGCACAATGCCATTACCTCATTCTGTTCTCACTGGACTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR GCA 90 bp TCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATaGCTATGGTGGACAAGCAGACCTCAGGAGTTCTTCAACCCTAAA +
Preference number: 1 (lower is better)
Translates to: SNFSHRGRNVLCYHQ*LWWTSRPQEFFNPK
Trigger: TTTAGGGTTGAAGAACTCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR TCA 90 bp GTTTGTGGTTTTCTTTGCTGCAGTGAACATAGACCAAGGAACACTTaGTCTGCCTGCTTAGGGTTGAAATCAAATTTGAAGACATGTGGC +
Preference number: 1 (lower is better)
Translates to: VCGFLCCSEHRPRNT*SACLGLKSNLKTCG
Trigger: GCCACATGTCTTCAAATTTGATTTCAACCCTAAGCAGGCAGATCAAGTGTTCCTTGGTCTATGTTCACTGCAGCAAAGAAAACCACAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp GCTCCCTGTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTGGCCCTGGCTCAGCAAGAAGCCTaGTCTGTGGCCCCTGGAGAG +
Preference number: 2 (lower is better)
Translates to: APCGLQAGPTLHIHSLALAQQEA*SVAPGE
Trigger: CTCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGC...CAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAGGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR CCA 90 bp ACGGAAGGGCTCCCTGTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTC +
Preference number: 2 (lower is better)
Translates to: TEGLPVVSRLDPHCTSIALLCGP*RAGFLV
Trigger: GACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAG...GGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAGGGAGCCCTTCCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR CCA 90 bp GAAGGGCTCCCTGTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTGGAAGAAGCCTGCTCTGTaGCCCCTGGAGAGCGGGGTT +
Preference number: 2 (lower is better)
Translates to: EGLPVVSRLDPHCTSIAWKKPAL*PLESGV
Trigger: AACCCCGCTCTCCAGGGGCCACAGAGCAGGCTTCTT...CCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAGGGAGCCCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR GCA 90 bp ACCATGAGATCTAGACGCCCAGCCCTCCCCATTGCTTCTCATCCCTCCAGCCTGGACCACAGGCTGCGGTaGCAGGCTGCTGGTGAGATT +
Preference number: 2 (lower is better)
Translates to: TMRSRRPALPIASHPSSLDHRLR*QAAGEI
Trigger: AATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTC...CAGGCTGGAGGGATGAGAAGCAATGGGGAGGGCTGGGCGTCTAGATCTCATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR-3UTR TCA 90 bp GCTCCCTGTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTGGCCCTGCCAGGTAGGGCCCATTaGAGTCAAAGCTGGGTAATT +
Preference number: 2 (lower is better)
Translates to: APCGLQAGPTLHIHSLALPGRAH*SQSWVI
Trigger: AATTACCCAGCTTTGACTTCAATGGGCCCTACCTGG...CAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAGGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR GCA 90 bp ACCATGAGATCTAGACGCCCAGCCCTCCCCATTGCTTCTCATCCCTCCAGCCTGACCCTAAACAGACCATaGAGAGCTCACCCTCACAGG +
Preference number: 2 (lower is better)
Translates to: TMRSRRPALPIASHPSSLTLNRP*RAHPHR
Trigger: CCTGTGAGGGTGAGCTCTGCATGGTCTGTTTAGGGT...CAGGCTGGAGGGATGAGAAGCAATGGGGAGGGCTGGGCGTCTAGATCTCATGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR-3UTR GCA 90 bp AGAACGAATGAACAGCTCAGCTGTCTAGACTTAGTCTCTGGGTGTGCTGTCCGGGACCACAGGCTGCGGTaGCAGGCTGCTGGTGAGATT +
Preference number: 2 (lower is better)
Translates to: RTNEQLSCLDLVSGCAVRDHRLR*QAAGEI
Trigger: AATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTC...CCGGACAGCACACCCAGAGACTAAGTCTAGACAGCTGAGCTGTTCATTCGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR CCA 90 bp TTGACCTCCAGGGGGCAGACACATGTACTCCAAGGAGCCTGGCAGTGCTGGCTTTGGGAAGTTGCTCTGTaGATTCAGATGAGGCAGCTG +
Preference number: 2 (lower is better)
Translates to: LTSRGQTHVLQGAWQCWLWEVAL*IQMRQL
Trigger: CAGCTGCCTCATCTGAATCCACAGAGCAACTTCCCA...AAGCCAGCACTGCCAGGCTCCTTGGAGTACATGTGTCTGCCCCCTGGAGGTCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR CCA 90 bp GGGTTCTCCTTTGGCTCCACGGAAGGGCTCCCTGTGGTCTCCAGGCTGGACCCACCTCTACTTGAACATTaGGAAGTTGCTCTGTGGATT +
Preference number: 2 (lower is better)
Translates to: GFSFGSTEGLPVVSRLDPPLLEH*EVALWI
Trigger: AATCCACAGAGCAACTTCCCAATGTTCAAGTAGAGG...TGGGTCCAGCCTGGAGACCACAGGGAGCCCTTCCGTGGAGCCAAAGGAGAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR TCA 90 bp CTGCAACACCTTCAAGACGTTTGTGGTTTTCTTTGCTGCAGTGAACATAGACCAGTGCCAGGCTGCTGGTaGGATTGGGAGGGGACAGAC +
Preference number: 2 (lower is better)
Translates to: LQHLQDVCGFLCCSEHRPVPGCW*DWEGTD
Trigger: GTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGCAC...TGGTCTATGTTCACTGCAGCAAAGAAAACCACAAACGTCTTGAAGGTGTTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp TACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACAAGTCCTGAGGACCACAGGCTaGGGTGCCAGGCTGCTGGTG +
Preference number: 2 (lower is better)
Translates to: YSRLIQRPCANVTMNKQVLRTTG*GARLLV
Trigger: CACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAG...GACTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR CCA 90 bp GACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTCACTTCCTCCATCAATGCCTATGGTaGACAAGCAGACCTCAGGAG +
Preference number: 2 (lower is better)
Translates to: DILRDKTVHELSSQPHFLHQCLW*TSRPQE
Trigger: CTCCTGAGGTCTGCTTGTCCACCATAGGCATTGATG...GAGGAAGTGAGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR TCA 90 bp GACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTCACTTCCTCCCAGTGAGAACAGAATaGGGTAATGGCATTGTGCCT +
Preference number: 2 (lower is better)
Translates to: DILRDKTVHELSSQPHFLPVRTE*GNGIVP
Trigger: AGGCACAATGCCATTACCTCATTCTGTTCTCACTGG...GAGGAAGTGAGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp ATTATATTAGGGTCCTCTATAGTGAGAGGTGACACGTTGTTGTCTTCCAAATGTTCGCGAAGGCTGCCATaGTGCCAGGAGGCCAGAGAC +
Preference number: 2 (lower is better)
Translates to: IILGSSIVRGDTLLSSKCSRRLP*CQEARD
Trigger: GTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCGA...ACATTTGGAAGACAACAACGTGTCACCTCTCACTATAGAGGACCCTAATATAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR CCA 90 bp CCAATACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACACACACCTTCCCAGACTaGCTATTGTCCCAAGGGGGC +
Preference number: 2 (lower is better)
Translates to: PILKTHTKAMCKRDHEQTHTFPD*LLSQGG
Trigger: GCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTG...TGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTATTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp TCTGCAGAGCAAGCATGTGGTCTAGAAAAGTTATCACATCCTGTTCAAGGTTCGACCCTAAACAGACCATaGAGAGCTCACCCTCACAGG +
Preference number: 2 (lower is better)
Translates to: SAEQACGLEKLSHPVQGSTLNRP*RAHPHR
Trigger: CCTGTGAGGGTGAGCTCTGCATGGTCTGTTTAGGGT...CGAACCTTGAACAGGATGTGATAACTTTTCTAGACCACATGCTTGCTCTGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp ATTGACTCCAGGTCCACAGAACATATAAGGACAGAACTCTGCAGAGCAAGCATGGGAGCAACAAGAGCCTaGCCAATTTTACAGTCTGTC +
Preference number: 2 (lower is better)
Translates to: IDSRSTEHIRTELCRASMGATRA*PILQSV
Trigger: GACAGACTGTAAAATTGGGCAGGCTCTTGTTGCTCC...CATGCTTGCTCTGCAGAGTTCTGTCCTTATATGTTCTGTGGACCTGGAGTCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR CAA 90 bp GGATCTCGAATTATATTAGGGTCCTCTATAGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTTCATATGACACCCCCTGTTGCTCAGCA +
Preference number: 2 (lower is better)
Translates to: GSRIILGSSIVRGDT*LSSKCSYDTPCCSA
Trigger: TGCTGAGCAACAGGGGGTGTCATATGAACATTTGGAAGACAACAACGTGTCACCTCTCACTATAGAGGACCCTAATATAATTCGAGATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR TCA 90 bp CACCTTCAAGACGTTTGTGGTTTTCTTTGCTGCAGTGAACATAGACCAAGGAACCTTTGTGCACATCAGTaGTTTCTGTACATAAGCAGG +
Preference number: 2 (lower is better)
Translates to: HLQDVCGFLCCSEHRPRNLCAHQ*FLYISR
Trigger: CCTGCTTATGTACAGAAATCACTGATGTGCACAAAG...GTTCCTTGGTCTATGTTCACTGCAGCAAAGAAAACCACAAACGTCTTGAAGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR TCA 90 bp TTGATCTGCCTGCTTAGGGTTGAAATCAAATTTGAAGACATGTGGCTGCCATCCAACAAACAAGTCCAGTaGGAACAGAATGAGGTAATG +
Preference number: 2 (lower is better)
Translates to: LICLLRVEIKFEDMWLPSNKQVQ*EQNEVM
Trigger: CATTACCTCATTCTGTTCTCACTGGACTTGTTTGTT...GGATGGCAGCCACATGTCTTCAAATTTGATTTCAACCCTAAGCAGGCAGATCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp GTGGAAAGAGCTATTCAGTCTCATCCAAAAGGACATTCTGAGGGACAAAACTGTACAGAGGCAGAAATGTaGTGTGTTATCATCAATGCC +
Preference number: 2 (lower is better)
Translates to: VERAIQSHPKGHSEGQNCTEAEM*CVIINA
Trigger: GGCATTGATGATAACACAGCACATTTCTGCCTCTGT...ACAGTTTTGTCCCTCAGAATGTCCTTTTGGATGAGACTGAATAGCTCTTTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp TACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACAAGTCCTGTGTCCAGCTTTGTaGACATCAGTGATTTCTGTA +
Preference number: 2 (lower is better)
Translates to: YSRLIQRPCANVTMNKQVLCPAL*TSVISV
Trigger: TACAGAAATCACTGATGTGCACAAAGCTGGACACAG...GACTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR GCA 90 bp TCCAGGTCCACAGAACATATAAGGACAGAACTCTGCAGAGCAAGCATGTGGTCTCACATGTACATTTGTTaGAAAGTCTGCTGCAAATAT +
Preference number: 2 (lower is better)
Translates to: SRSTEHIRTELCRASMWSHMYIC*KVCCKY
Trigger: ATATTTGCAGCAGACTTTGCAACAAATGTACATGTG...AGACCACATGCTTGCTCTGCAGAGTTCTGTCCTTATATGTTCTGTGGACCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR CCA 90 bp TTTCAGTGTTCATATCTTAACATGGAGGCCGTTCCTGTTTGTTTCTCTAGAGCATATCATCAATGCCTATaGTGGACAAGCAGACCTCAG +
Preference number: 2 (lower is better)
Translates to: FQCSYLNMEAVPVCFSRAYHQCL*WTSRPQ
Trigger: CTGAGGTCTGCTTGTCCACCATAGGCATTGATGATA...TGCTCTAGAGAAACAAACAGGAACGGCCTCCATGTTAAGATATGAACACTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR CAA 90 bp GTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTGGCCCTGTCCCATCAGGCAGGGAGTGGGATaGGGGAGGCCCCAGGTAGGG +
Preference number: 3 (lower is better)
Translates to: VVSRLDPHCTSIAWPCPIRQGVG*GRPQVG
Trigger: CCCTACCTGGGGCCTCCCCAATCCCACTCCCTGCCT...GATGGGACAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR CAA 90 bp GCTCCCTGTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTGGCCCTGTGGGACCAGTTGCACTaGACCTCCAGGGGGCAGACA +
Preference number: 3 (lower is better)
Translates to: APCGLQAGPTLHIHSLALWDQLH*TSRGQT
Trigger: TGTCTGCCCCCTGGAGGTCAAGTGCAACTGGTCCCA...CAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAGGGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR CAA 90 bp GCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGAAGGCTGCTGGTGAGATaGGGAGGGGACAGACTCAGC +
Preference number: 3 (lower is better)
Translates to: AHPHRPPHSNRSEGQEGRRLLVR*GGDRLS
Trigger: GCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCT...TCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 72 bp CCCTGTTGCTCAGCAAGAAGCCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTCGCGAAGGCTGCCATG +
Preference number: 3 (lower is better)
Translates to: PCCSARSLLCGP*RAGFLVAKAAM
Trigger: CATGGCAGCCTTCGCGACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGCAACAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR TCA 72 bp GGGAGTGGGATTGGGGAGGCCCCAGGTAGGGCCCATTaGAGTCAAAGCTGGGTAATTGCTTCCTGGGTCGGC +
Preference number: 3 (lower is better)
Translates to: GSGIGEAPGRAH*SQSWVIASWVG
Trigger: GCCGACCCAGGAAGCAATTACCCAGCTTTGACTTCAATGGGCCCTACCTGGGGCCTCCCCAATCCCACTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR CCA 72 bp GTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTaGCCCTGTCCCATCACCTGGGACAATGGGACCAGT +
Preference number: 3 (lower is better)
Translates to: VSRLDPHCTSIA*PCPITWDNGTS
Trigger: ACTGGTCCCATTGTCCCAGGTGATGGGACAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR-3UTR CAA 90 bp ACCATGAGATCTAGACGCCCAGCCCTCCCCATTGCTTCTCATCCCTCCAGCCTGAGGCTGCTGGTGAGATaGGGAGGGGACAGACTCAGC +
Preference number: 3 (lower is better)
Translates to: TMRSRRPALPIASHPSSLRLLVR*GGDRLS
Trigger: GCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCT...CAGGCTGGAGGGATGAGAAGCAATGGGGAGGGCTGGGCGTCTAGATCTCATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 72 bp TTTCTCCACGCTCAGCTCAACTGGAGGGTTCTCCTTTaGCTCCACGGAAGGGCTCCCTGTGGTCTCCAGGCT +
Preference number: 3 (lower is better)
Translates to: FLHAQLNWRVLL*LHGRAPCGLQA
Trigger: AGCCTGGAGACCACAGGGAGCCCTTCCGTGGAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCGTGGAGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR CCA 72 bp GCCCTCAGGGCCCCCAGAGCTTATGGGAAGAGTCATTaGGTTGTCCCTTGCCTCCTGTTTCTCCACGCTCAG +
Preference number: 3 (lower is better)
Translates to: ALRAPRAYGKSH*VVPCLLFLHAQ
Trigger: CTGAGCGTGGAGAAACAGGAGGCAAGGGACAACCCAATGACTCTTCCCATAAGCTCTGGGGGCCCTGAGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR TCA 72 bp GGTAATGGCATTGTGCCTGGATTGTCAAGAGGGTGGTaGTGGCCAAGGGCCACAGTACCACAGCAGACCCTC +
Preference number: 3 (lower is better)
Translates to: GNGIVPGLSRGW*WPRATVPQQTL
Trigger: GAGGGTCTGCTGTGGTACTGTGGCCCTTGGCCATCACCACCCTCTTGACAATCCAGGCACAATGCCATTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR GCA 72 bp GCAGACCTCAGGAGTTCTTCAACCCTAAACAGACCATaGAGAGCTCACCCTCACAGGCCTCCCCACTCCAAC +
Preference number: 3 (lower is better)
Translates to: ADLRSSSTLNRP*RAHPHRPPHSN
Trigger: GTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCTGTTTAGGGTTGAAGAACTCCTGAGGTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 72 bp AGGCCATCATACTGCCCTCAGGGCCCCCAGAGCTTATaGGAAGAGTCATTGGGTTGTCCCTTGCCTCCTGTT +
Preference number: 3 (lower is better)
Translates to: RPSYCPQGPQSL*EESLGCPLPPV
Trigger: AACAGGAGGCAAGGGACAACCCAATGACTCTTCCCATAAGCTCTGGGGGCCCTGAGGGCAGTATGATGGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR GCA 72 bp CATCTGAGGCCAGTGGGAGCACAGGTATCCAAGCTTTaGTCTGGAGGGAGAACGAATGAACAGCTCAGCTGT +
Preference number: 3 (lower is better)
Translates to: HLRPVGAQVSKL*SGGRTNEQLSC
Trigger: ACAGCTGAGCTGTTCATTCGTTCTCCCTCCAGAGCAAAGCTTGGATACCTGTGCTCCCACTGGCCTCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR CAA 90 bp GTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTGGCCCTGTCCCATCAGAGGTGACACGTTGTaGTCTTCCAAATGTTCATAT +
Preference number: 3 (lower is better)
Translates to: VVSRLDPHCTSIAWPCPIRGDTL*SSKCSY
Trigger: ATATGAACATTTGGAAGACAACAACGTGTCACCTCT...GATGGGACAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR TCA 72 bp GTATTGTTGTGTCAGAGCAGGGAGCAAGGAGGAGTGTaGACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCT +
Preference number: 3 (lower is better)
Translates to: VLLCQSREQGGV*TQRGFCGDAQA
Trigger: AGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACACTCCTCCTTGCTCCCTGCTCTGACACAACAATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR TCA 72 bp CATCCAAAAGGACATTCTGAGGGACAAAACTGTTCATaGGCTCAGCTCCCAACCTCACTTCCTCACCACCCC +
Preference number: 3 (lower is better)
Translates to: HPKGHSEGQNCS*AQLPTSLPHHP
Trigger: GGGGTGGTGAGGAAGTGAGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTCCTTTTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR TCA 72 bp TACTTGAACATTGGGAAGTTGCTCTGTGGATTCAGATaGGGCAGCTGGGGTTGTATCAGGCCTGGATGGTGG +
Preference number: 3 (lower is better)
Translates to: YLNIGKLLCGFR*GSWGCIRPGWW
Trigger: CCACCATCCAGGCCTGATACAACCCCAGCTGCCTCATCTGAATCCACAGAGCAACTTCCCAATGTTCAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR GCA 72 bp TTGTTGTCTTCCAAATGTTCATATGACACCCCCTGTTaGTCAGCAAGAAGCCTGCTCTGTGGCCCCTGGAGA +
Preference number: 3 (lower is better)
Translates to: LLSSKCSYDTPC*SARSLLCGPWR
Trigger: TCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGCAACAGGGGGTGTCATATGAACATTTGGAAGACAACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
3UTR TCA 72 bp CCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTaGTTTCTGTACATAAGCAGGGTCCCAAGTACCTTC +
Preference number: 3 (lower is better)
Translates to: PGHSCVQLCAHQ*FLYISRVPSTF
Trigger: GAAGGTACTTGGGACCCTGCTTATGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR TCA 72 bp ACAGGTATCCAAGCTTTGCTCTGGAGGGAGAACGAATaGACAGCTCAGCTGTCTAGACTTAGTCTCTGGGTG +
Preference number: 3 (lower is better)
Translates to: TGIQALLWRENE*TAQLSRLSLWV
Trigger: CACCCAGAGACTAAGTCTAGACAGCTGAGCTGTTCATTCGTTCTCCCTCCAGAGCAAAGCTTGGATACCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR TCA 72 bp CGTGACCATGAACAAACAAGTCCAGTGAGAACAGAATaGGGTAATGGCATTGTGCCTGGATTGTCAAGAGGG +
Preference number: 3 (lower is better)
Translates to: RDHEQTSPVRTE*GNGIVPGLSRG
Trigger: CCCTCTTGACAATCCAGGCACAATGCCATTACCTCATTCTGTTCTCACTGGACTTGTTTGTTCATGGTCACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR GCA 72 bp TCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATaGCTATGGTGGACAAGCAGACCTCAGGAGTTCTTC +
Preference number: 3 (lower is better)
Translates to: SHRGRNVLCYHQ*LWWTSRPQEFF
Trigger: GAAGAACTCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 72 bp AGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATaGTGGACAAGCAGACCTCAGGAGTTCTTCAACCCT +
Preference number: 3 (lower is better)
Translates to: RGRNVLCYHQCL*WTSRPQEFFNP
Trigger: AGGGTTGAAGAACTCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR-3UTR CAA 90 bp TACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACAAGTCACAGGTATCCAAGCTTaGCTCTGGAGGGAGAACGAA +
Preference number: 3 (lower is better)
Translates to: YSRLIQRPCANVTMNKQVTGIQA*LWRENE
Trigger: TTCGTTCTCCCTCCAGAGCAAAGCTTGGATACCTGT...GACTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR GCA 72 bp CCTGAGACTCCAACTTTTCACACAGAGGCAGAAATGTaGTGTGTTATCATCAATGCCTATGGTGGACAAGCA +
Preference number: 3 (lower is better)
Translates to: PETPTFHTEAEM*CVIINAYGGQA
Trigger: TGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGAGTCTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CCA 72 bp GGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTaGACAAGCAGACCTCAGGAGTTCTTCAACCCTAAA +
Preference number: 3 (lower is better)
Translates to: GRNVLCYHQCLW*TSRPQEFFNPK
Trigger: TTTAGGGTTGAAGAACTCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR GCA 72 bp GACTCCAGGTCCACAGAACATATAAGGACAGAACTCTaGAGAGCAAGCATGTGGTCTAGAAAAGTTATCACA +
Preference number: 3 (lower is better)
Translates to: DSRSTEHIRTEL*RASMWSRKVIT
Trigger: TGTGATAACTTTTCTAGACCACATGCTTGCTCTGCAGAGTTCTGTCCTTATATGTTCTGTGGACCTGGAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR-3UTR CAA 90 bp TTTCAGTGTTCATATCTTAACATGGAGGCCGTTCCTGTTTGTTTCTCTAGAGCAGGGTTGAAATCAAATTaGAAGACATGTGGCTGCCAT +
Preference number: 3 (lower is better)
Translates to: FQCSYLNMEAVPVCFSRAGLKSN*KTCGCH
Trigger: ATGGCAGCCACATGTCTTCAAATTTGATTTCAACCC...TGCTCTAGAGAAACAAACAGGAACGGCCTCCATGTTAAGATATGAACACTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR TCA 72 bp CACATCCTGTTCAAGGTTCGAGACACAGAAGGAGACTaGAAGAATATAAGGCACATGTACATTTGTTGCAAA +
Preference number: 3 (lower is better)
Translates to: HILFKVRDTEGD*KNIRHMYICCK
Trigger: TTTGCAACAAATGTACATGTGCCTTATATTCTTTCAGTCTCCTTCTGTGTCTCGAACCTTGAACAGGATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR TCA 72 bp TTTCTTTGCTGCAGTGAACATAGACCAAGGAACACTTaGTCTGCCTGCTTAGGGTTGAAATCAAATTTGAAG +
Preference number: 3 (lower is better)
Translates to: FLCCSEHRPRNT*SACLGLKSNLK
Trigger: CTTCAAATTTGATTTCAACCCTAAGCAGGCAGATCAAGTGTTCCTTGGTCTATGTTCACTGCAGCAAAGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACGCTCAGCAAGAAGCCTaGTCTGTGGCCCCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDAQQEA*SVAPGE
Trigger: CTCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGC...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTC +
Preference number: 4 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDLLCGP*RAGFLV
Trigger: GACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAG...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGAAGGCTCCCACCCACCTaGGGAGAACCCAGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: AHPHRPPHSNRSEGQEGRRLPPT*GEPSWP
Trigger: AGGCCAGCTGGGTTCTCCCCAGGTGGGTGGGAGCCT...TCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp AGACCATGCAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGAGGGATGTGGGGATGCTaGGCCCACTTCCTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: RPCRAHPHRPPHSNRSEGGMWGC*AHFLPG
Trigger: CCCAGGGAGGAAGTGGGCCCAGCATCCCCACATCCC...TCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp AGACCATGCAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGATCGCGAAGGCTGCCATaGTGCCAGGAGGCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: RPCRAHPHRPPHSNRSEGSRRLP*CQEARD
Trigger: GTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCGA...TCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCACGGAAGGGCTCCCTGTaGTCTCCAGGCTGGACCCAC +
Preference number: 4 (lower is better)
Translates to: GGDRLSTPSQTGYCPKGARKGSL*SPGWTH
Trigger: GTGGGTCCAGCCTGGAGACCACAGGGAGCCCTTCCG...TGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp AGACCATGCAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGAGCCTTGTCCCCATGCTaGGCCAGTGGGACCATGAGC +
Preference number: 4 (lower is better)
Translates to: RPCRAHPHRPPHSNRSEGALSPC*ASGTMS
Trigger: GCTCATGGTCCCACTGGCCCAGCATGGGGACAAGGC...TCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230115.3
CDS-3UTR TCA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACAGAGGAGGGTCATGTTaGTTAGCCCCTGGGCATCCT +
Preference number: 4 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDRGGSC*LAPGHP
Trigger: AGGATGCCCAGGGGCTAATCAACATGACCCTCCTCT...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR TCA 90 bp AGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGGGGCCAGTGGGACCATaGGCTGGATGCCCAGGTCAC +
Preference number: 4 (lower is better)
Translates to: RPPHSNRSEGQEGRSHRRGPVGP*AGCPGH
Trigger: GTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCC...CCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR TCA 90 bp CTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCAGGGACAGGTAGTGGGCCAGTGGGACCATaGGCTGGATGCCCAGGTCAC +
Preference number: 4 (lower is better)
Translates to: LSTPSQTGYCPKGAGTGSGPVGP*AGCPGH
Trigger: GTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCC...ACTACCTGTCCCTGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACGGCATCCTCTGTGTCTaGCCAGCTGCAGATGATACG +
Preference number: 4 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDGILCV*PAADDT
Trigger: CGTATCATCTGCAGCTGGGCAGACACAGAGGATGCC...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp AGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGGGGGGTGGCTGCACATaGTGGGCCAGTGGGACCATG +
Preference number: 4 (lower is better)
Translates to: RPPHSNRSEGQEGRSHRRGGGCT*WASGTM
Trigger: CATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCC...CCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCT
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp GGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCACTGGGCCTTGTCCCCTaGCTGGGAGTCCCAGTGAAC +
Preference number: 4 (lower is better)
Translates to: GGDRLSTPSQTGYCPKGALGLVP*LGVPVN
Trigger: GTTCACTGGGACTCCCAGCCAGGGGACAAGGCCCAG...TGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp CTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCAGGGACAGGTAGTGGAGCCTGGCAGTGCTaGCTTCAGGCTCCCACCCAC +
Preference number: 4 (lower is better)
Translates to: LSTPSQTGYCPKGAGTGSGAWQC*LQAPTH
Trigger: GTGGGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCC...ACTACCTGTCCCTGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACCACGCTCAGCTCAACTaGAGGGTTCTCCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDHAQLN*RVLLWL
Trigger: GAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCGTG...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCACTCCCTGGGCTCTCCTaGGATCACTGTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: GGDRLSTPSQTGYCPKGALPGLS*DHCGAA
Trigger: AGCAGCCCCACAGTGATCCCAGGAGAGCCCAGGGAG...TGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CAA 72 bp AGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATaGGGAGGGGACAGACTCAGCACACCTTCCCAGACT +
Preference number: 4 (lower is better)
Translates to: RTTGCGARLLVR*GGDRLSTPSQT
Trigger: AGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp AGACCATGCAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGATGTGTACTGGCTGTGTaGACTGGGCTCAGGCACAGG +
Preference number: 4 (lower is better)
Translates to: RPCRAHPHRPPHSNRSEGCVLAV*TGLRHR
Trigger: CCTGTGCCTGAGCCCAGTGCACACAGCCAGTACACA...TCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp GCCAGGCTGCTGGTGAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTCGAAGGCTGCCATGCTaGCAGGAGGCCAGAGACCTT +
Preference number: 4 (lower is better)
Translates to: ARLLVRLGGDRLSTPSQTRRLPC*QEARDL
Trigger: AAGGTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCG...AGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp ACCATGAGATCTAGACGCCCAGCCCTCCCCATTGCTTCTCATCCCTCCAGCCTGCAGAGGCCATCATACTaGCCTCAGGGCCCCCAGAGC +
Preference number: 4 (lower is better)
Translates to: TMRSRRPALPIASHPSSLQRPSY*PQGPQS
Trigger: GCTCTGGGGGCCCTGAGGGCAGTATGATGGCCTCTG...CAGGCTGGAGGGATGAGAAGCAATGGGGAGGGCTGGGCGTCTAGATCTCATGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GCCAGGCTGCTGGTGAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTC +
Preference number: 4 (lower is better)
Translates to: ARLLVRLGGDRLSTPSQTLLCGP*RAGFLV
Trigger: GACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAG...AGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGACCCTGTCCCATCACCTaGGACAATGGGACCAGTTGC +
Preference number: 4 (lower is better)
Translates to: AHPHRPPHSNRSEGQEGRPCPIT*DNGTSC
Trigger: GCAACTGGTCCCATTGTCCCAGGTGATGGGACAGGG...TCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GGGAGCAAGGAGGAGTGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGCGGAAGGGCTCCCTGTaGTCTCCAGGCTGGACCCAC +
Preference number: 4 (lower is better)
Translates to: GSKEECELREASVVMLRLRKGSL*SPGWTH
Trigger: GTGGGTCCAGCCTGGAGACCACAGGGAGCCCTTCCG...CAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACACTCCTCCTTGCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCGGGGACGTGGCTGCCTaGCTCACACTTGGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: CELREASVVMLRLRTTGCGDVAA*LTLGGS
Trigger: GCTGCCTCCAAGTGTGAGCCAGGCAGCCACGTCCCC...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GGGAGCAAGGAGGAGTGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGGGGGACGTGGCTGCCTaGCTCACACTTGGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: GSKEECELREASVVMLRLGDVAA*LTLGGS
Trigger: GCTGCCTCCAAGTGTGAGCCAGGCAGCCACGTCCCC...CAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACACTCCTCCTTGCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp ACCATGAGATCTAGACGCCCAGCCCTCCCCATTGCTTCTCATCCCTCCAGCCTGGGCCCACTTCCTCCCTaGGCTCTCCTGGGATCACTG +
Preference number: 4 (lower is better)
Translates to: TMRSRRPALPIASHPSSLGPLPP*ALLGSL
Trigger: CAGTGATCCCAGGAGAGCCCAGGGAGGAAGTGGGCC...CAGGCTGGAGGGATGAGAAGCAATGGGGAGGGCTGGGCGTCTAGATCTCATGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp ACCATGAGATCTAGACGCCCAGCCCTCCCCATTGCTTCTCATCCCTCCAGCCTGCGAAGGCTGCCATGCTaGCAGGAGGCCAGAGACCTT +
Preference number: 4 (lower is better)
Translates to: TMRSRRPALPIASHPSSLRRLPC*QEARDL
Trigger: AAGGTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCG...CAGGCTGGAGGGATGAGAAGCAATGGGGAGGGCTGGGCGTCTAGATCTCATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCCAGAGGCCATCATACTaGCCTCAGGGCCCCCAGAGC +
Preference number: 4 (lower is better)
Translates to: CELREASVVMLRLRTTGCQRPSY*PQGPQS
Trigger: GCTCTGGGGGCCCTGAGGGCAGTATGATGGCCTCTG...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GCCAGGCTGCTGGTGAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTGTCCCAGTGAACCTCTaGGCTCCATCTGCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: ARLLVRLGGDRLSTPSQTVPVNL*APSAGS
Trigger: AGACCCAGCAGATGGAGCCCAGAGGTTCACTGGGAC...AGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp GCCAGGCTGCTGGTGAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTCTGTGGTCTCCAGGCTaGACCCACACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: ARLLVRLGGDRLSTPSQTLWSPG*THTAHP
Trigger: TGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAG...AGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp CTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGCAGAGAGGCCTTCGGGATGTaGGGATGCTGGGCCCACTTC +
Preference number: 4 (lower is better)
Translates to: LPTPTGRRDRKEDPIEGREAFGM*GCWAHF
Trigger: GAAGTGGGCCCAGCATCCCCACATCCCGAAGGCCTC...TCTGCCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR TCA 90 bp CTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGCAGAGATCCCCAGAGGGGCTaGTGTGGATGTCCTTGGGAG +
Preference number: 4 (lower is better)
Translates to: LPTPTGRRDRKEDPIEGRDPQRG*CGCPWE
Trigger: CTCCCAAGGACATCCACATCAGCCCCTCTGGGGATC...TCTGCCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp GGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCAGGCATCCTCTGTGTCTaGCCAGCTGCAGATGATACG +
Preference number: 4 (lower is better)
Translates to: GGDRLSTPSQTGYCPKGAGILCV*PAADDT
Trigger: CGTATCATCTGCAGCTGGGCAGACACAGAGGATGCC...TGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp CAGGAGTTCTTCAACCCTAAACAGACCATGCAGAGCTCACCCTCACAGGCCTCCCAAGGAGCCTGGCAGTaGTGGCTTCAGGCTCCCACC +
Preference number: 4 (lower is better)
Translates to: QEFFNPKQTMQSSPSQASQGAWQ*WLQAPT
Trigger: GGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCCTTG...GGAGGCCTGTGAGGGTGAGCTCTGCATGGTCTGTTTAGGGTTGAAGAACTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCTTCGGGATGTGGGGATaGTGGGCCCACTTCCTCCCT +
Preference number: 4 (lower is better)
Translates to: CELREASVVMLRLRTTGCFGMWG*WAHFLP
Trigger: AGGGAGGAAGTGGGCCCAGCATCCCCACATCCCGAA...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp AGACCATGCAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGAATGTTGATTAGCCCCTaGGCATCCTCTGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: RPCRAHPHRPPHSNRSEGMLISP*ASSVSA
Trigger: GGCAGACACAGAGGATGCCCAGGGGCTAATCAACAT...TCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGTGGCTGCACATGCTaGGCCAGTGGGACCATGAGC +
Preference number: 4 (lower is better)
Translates to: EIGRGQTQHTFPDWLLSQGGCTC*ASGTMS
Trigger: GCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACC...TTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp AGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGACTGGCTGTGTGCACTaGGCTCAGGCACAGGTAGAC +
Preference number: 4 (lower is better)
Translates to: RPPHSNRSEGQEGRSHRRTGCVH*AQAQVD
Trigger: GTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGT...CCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAACCCATGCTGGGCCAGTaGGACCATGAGCTGGATGCC +
Preference number: 4 (lower is better)
Translates to: EIGRGQTQHTFPDWLLSQPMLGQ*DHELDA
Trigger: GGCATCCAGCTCATGGTCCCACTGGCCCAGCATGGG...TTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACTTCCCTTGTTCCAGGTaGTTAACAGAGACTGTGTAC +
Preference number: 4 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDFPCSR*LTETVY
Trigger: GTACACAGTCTCTGTTAAGCACCTGGAACAAGGGAA...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp GAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAACACTGTGGGGCTGCTTaGCACAGGAGGAGCAGGATG +
Preference number: 4 (lower is better)
Translates to: EIGRGQTQHTFPDWLLSQHCGAA*HRRSRM
Trigger: CATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTG...TTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCCTGTGGTCTCCAGGCTaGACCCACACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: CELREASVVMLRLRTTGCLWSPG*THTAHP
Trigger: TGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAG...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp CTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCAGGGACAGGTAGTCACGCTCAGCTCAACTaGAGGGTTCTCCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: LSTPSQTGYCPKGAGTGSHAQLN*RVLLWL
Trigger: GAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCGTG...ACTACCTGTCCCTGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp AGACCATGCAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGATATGGGAAGAGTCATTaGGTTGTCCCTTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: RPCRAHPHRPPHSNRSEGYGKSH*VVPCLL
Trigger: CAGGAGGCAAGGGACAACCCAATGACTCTTCCCATA...TCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CAA 72 bp TGCCCTCAGGGCCCCCAGAGCTTATGGGAAGAGTCATaGGGTTGTCCCTTGCCTCCTGTTTCTCCACGCTCA +
Preference number: 4 (lower is better)
Translates to: CPQGPQSLWEES*GCPLPPVSPRS
Trigger: TGAGCGTGGAGAAACAGGAGGCAAGGGACAACCCAATGACTCTTCCCATAAGCTCTGGGGGCCCTGAGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
CDS-3UTR TCA 90 bp CTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGCAGAAGAGGAGGGTCATGTTaGTTAGCCCCTGGGCATCCT +
Preference number: 4 (lower is better)
Translates to: LPTPTGRRDRKEDPIEGRRGGSC*LAPGHP
Trigger: AGGATGCCCAGGGGCTAATCAACATGACCCTCCTCT...TCTGCCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGAGAGCAGTGGAGAGACTaGATCCCATCAAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: AHPHRPPHSNRSEGQEGREQWRD*IPSKKH
Trigger: ATGCTTCTTTGATGGGATCCAGTCTCTCCACTGCTC...TCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp AGTACCACAGCAGACCCTCATCTGAGGCCAGTGGGAGCACAGGTATCCAAGCTTACTGGCTGTGTGCACTaGGCTCAGGCACAGGTAGAC +
Preference number: 4 (lower is better)
Translates to: STTADPHLRPVGAQVSKLTGCVH*AQAQVD
Trigger: GTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGT...AAGCTTGGATACCTGTGCTCCCACTGGCCTCAGATGAGGGTCTGCTGTGGTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp AGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGCCTTTACCTCCATCCTaGAACAGGAGGCTCTTGCTG +
Preference number: 4 (lower is better)
Translates to: RPPHSNRSEGQEGRSHRRPLPPS*NRRLLL
Trigger: CAGCAAGAGCCTCCTGTTCCAGGATGGAGGTAAAGG...CCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp CTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCAGGGACAGGTAGTGGCCCCCAGAGCTTATaGGAAGAGTCATTGGGTTGT +
Preference number: 4 (lower is better)
Translates to: LSTPSQTGYCPKGAGTGSGPQSL*EESLGC
Trigger: ACAACCCAATGACTCTTCCCATAAGCTCTGGGGGCC...ACTACCTGTCCCTGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTCACTTCCTCGGGATGTGGGGATGCTaGGCCCACTTCCTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: DILRDKTVHELSSQPHFLGMWGC*AHFLPG
Trigger: CCCAGGGAGGAAGTGGGCCCAGCATCCCCACATCCC...GAGGAAGTGAGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp AATGAGGTAATGGCATTGTGCCTGGATTGTCAAGAGGGTGGTGATGGCCAAGGGGAGGCCTTCGGGATGTaGGGATGCTGGGCCCACTTC +
Preference number: 4 (lower is better)
Translates to: NEVMALCLDCQEGGDGQGEAFGM*GCWAHF
Trigger: GAAGTGGGCCCAGCATCCCCACATCCCGAAGGCCTC...CCCTTGGCCATCACCACCCTCTTGACAATCCAGGCACAATGCCATTACCTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp GGGAGCAAGGAGGAGTGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGGAAAAACTGAATGGCTaGGGCCTGGGGCAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: GSKEECELREASVVMLRLEKLNG*GLGQGL
Trigger: CAACCCTTGCCCCAGGCCCCAGCCATTCAGTTTTTC...CAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACACTCCTCCTTGCTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CAA 72 bp CTGTCCCATCACCTGGGACAATGGGACCAGTTGCACTaGACCTCCAGGGGGCAGACACATGTACTCCAAGGA +
Preference number: 4 (lower is better)
Translates to: LSHHLGQWDQLH*TSRGQTHVLQG
Trigger: TCCTTGGAGTACATGTGTCTGCCCCCTGGAGGTCAAGTGCAACTGGTCCCATTGTCCCAGGTGATGGGACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
CDS-3UTR GCA 90 bp GCCAGGCTGCTGGTGAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTCTAGGTTTTCTGTCTTaGTGTCCTTCCAGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: ARLLVRLGGDRLSTPSQTLGFLS*CPSSSL
Trigger: CAGAGAGCTGGAAGGACAGCAAGACAGAAAACCTAG...AGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTCACCAGCAGCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTGATTTCTGTACACCGGAGCTGCAGGGCTaGGGCGATAGAAGAGCCCAA +
Preference number: 4 (lower is better)
Translates to: SSLAIAVSSFVHISDFCTPELQG*GDRRAQ
Trigger: TTGGGCTCTTCTATCGCCCCAGCCCTGCAGCTCCGG...TGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GGGAGCAAGGAGGAGTGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGACAGGAGGCTCTTGCTaGGGTTGGGGATCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: GSKEECELREASVVMLRLTGGSC*GWGSFP
Trigger: AGGAAAAGATCCCCAACCCCAGCAAGAGCCTCCTGT...CAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACACTCCTCCTTGCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCGGCCCCCAGAGCTTATaGGAAGAGTCATTGGGTTGT +
Preference number: 4 (lower is better)
Translates to: CELREASVVMLRLRTTGCGPQSL*EESLGC
Trigger: ACAACCCAATGACTCTTCCCATAAGCTCTGGGGGCC...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CAA 72 bp CCCCAGAGCTTATGGGAAGAGTCATTGGGTTGTCCCTaGCCTCCTGTTTCTCCACGCTCAGCTCAACTGGAG +
Preference number: 4 (lower is better)
Translates to: PQSLWEESLGCP*PPVSPRSAQLE
Trigger: CTCCAGTTGAGCTGAGCGTGGAGAAACAGGAGGCAAGGGACAACCCAATGACTCTTCCCATAAGCTCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
CDS-3UTR TCA 90 bp CTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGCAGAGTCCTTCCAGCTCTCTaGCTTCTTCTTGTACTGGAC +
Preference number: 4 (lower is better)
Translates to: LPTPTGRRDRKEDPIEGRVLPAL*LLLVLD
Trigger: GTCCAGTACAAGAAGAAGTCAGAGAGCTGGAAGGAC...TCTGCCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp GACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTCACTTCCTCTTCGGGATGTGGGGATaGTGGGCCCACTTCCTCCCT +
Preference number: 4 (lower is better)
Translates to: DILRDKTVHELSSQPHFLFGMWG*WAHFLP
Trigger: AGGGAGGAAGTGGGCCCAGCATCCCCACATCCCGAA...GAGGAAGTGAGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCGGTCTGGTTGAGGATTaGAGGTTCCATCTGGATGTG +
Preference number: 4 (lower is better)
Translates to: CELREASVVMLRLRTTGCGLVED*RFHLDV
Trigger: CACATCCAGATGGAACCTCCAATCCTCAACCAGACC...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAACAGGAGGCTCTTGCTaGGGTTGGGGATCTTTTCCT +
Preference number: 4 (lower is better)
Translates to: EIGRGQTQHTFPDWLLSQTGGSC*GWGSFP
Trigger: AGGAAAAGATCCCCAACCCCAGCAAGAGCCTCCTGT...TTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGACCTCTACTTGAACATTaGGAAGTTGCTCTGTGGATT +
Preference number: 4 (lower is better)
Translates to: AHPHRPPHSNRSEGQEGRPLLEH*EVALWI
Trigger: AATCCACAGAGCAACTTCCCAATGTTCAAGTAGAGG...TCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp ACCATGAGATCTAGACGCCCAGCCCTCCCCATTGCTTCTCATCCCTCCAGCCTGTTCACAGACAAGTCCTaGTCTAGGTCCTCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: TMRSRRPALPIASHPSSLFTDKS*SRSSVS
Trigger: TGAGACTGAGGACCTAGACCAGGACTTGTCTGTGAA...CAGGCTGGAGGGATGAGAAGCAATGGGGAGGGCTGGGCGTCTAGATCTCATGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp CAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACCTCAGGATCGCGAAGGCTGCCATaGTGCCAGGAGGCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: QKCAVLSSMPMVDKQTSGSRRLP*CQEARD
Trigger: GTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCGA...TCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp CAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACCTCAGGATGGGCCTTGTCCCCATaGTGGGCCAGTGGGACCATG +
Preference number: 4 (lower is better)
Translates to: QKCAVLSSMPMVDKQTSGWALSP*WASGTM
Trigger: CATGGTCCCACTGGCCCAGCATGGGGACAAGGCCCA...TCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TCTGGAGGGAGAACGAATGAACAGCTCAGCTGTCTAGACTTAGTCTCTGGGTGTCTGGGCTCCATCTGCTaGGTCTCCCAGACAAGCTTG +
Preference number: 4 (lower is better)
Translates to: SGGRTNEQLSCLDLVSGCLGSIC*VSQTSL
Trigger: CAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAG...ACACCCAGAGACTAAGTCTAGACAGCTGAGCTGTTCATTCGTTCTCCCTCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp CAGGAGTTCTTCAACCCTAAACAGACCATGCAGAGCTCACCCTCACAGGCCTCCTGGGAAGTTGCTCTGTaGATTCAGATGAGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: QEFFNPKQTMQSSPSQASWEVAL*IQMRQL
Trigger: CAGCTGCCTCATCTGAATCCACAGAGCAACTTCCCA...GGAGGCCTGTGAGGGTGAGCTCTGCATGGTCTGTTTAGGGTTGAAGAACTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TTGATCTGCCTGCTTAGGGTTGAAATCAAATTTGAAGACATGTGGCTGCCATCCGGAGCCTGGCAGTGCTaGCTTCAGGCTCCCACCCAC +
Preference number: 4 (lower is better)
Translates to: LICLLRVEIKFEDMWLPSGAWQC*LQAPTH
Trigger: GTGGGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCC...GGATGGCAGCCACATGTCTTCAAATTTGATTTCAACCCTAAGCAGGCAGATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR TCA 90 bp AGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGAATACTTTAGGGACTTaGAAAACTGAATGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: RPPHSNRSEGQEGRSHRRNTLGT*KTEWLG
Trigger: CCCCAGCCATTCAGTTTTTCAAGTCCCTAAAGTATT...CCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp TACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACAAGTCTTGGGAGGGGGTGGCTaGACATGCTGGGCCAGTGGG +
Preference number: 4 (lower is better)
Translates to: YSRLIQRPCANVTMNKQVLGGGG*TCWASG
Trigger: CCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAA...GACTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp AGAACGAATGAACAGCTCAGCTGTCTAGACTTAGTCTCTGGGTGTGCTGTCCGGGGAACAGGAGGCTCTTaGTGGGGTTGGGGATCTTTT +
Preference number: 4 (lower is better)
Translates to: RTNEQLSCLDLVSGCAVRGTGGS*WGWGSF
Trigger: AAAAGATCCCCAACCCCAGCAAGAGCCTCCTGTTCC...CCGGACAGCACACCCAGAGACTAAGTCTAGACAGCTGAGCTGTTCATTCGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp ATCCAAAAGGACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTGCTCAGCAAGAAGCCTaGTCTGTGGCCCCTGGAGAG +
Preference number: 4 (lower is better)
Translates to: IQKDILRDKTVHELSSQPAQQEA*SVAPGE
Trigger: CTCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGC...AGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTCCTTTTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp CACCTTCAAGACGTTTGTGGTTTTCTTTGCTGCAGTGAACATAGACCAAGGAACCAAGGAGCCTGGCAGTaGTGGCTTCAGGCTCCCACC +
Preference number: 4 (lower is better)
Translates to: HLQDVCGFLCCSEHRPRNQGAWQ*WLQAPT
Trigger: GGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCCTTG...GTTCCTTGGTCTATGTTCACTGCAGCAAAGAAAACCACAAACGTCTTGAAGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp AGACTCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTGTCCTTGGGAGGGGGTaGCTGCACATGCTGGGCCAG +
Preference number: 4 (lower is better)
Translates to: RLQLFTQRQKCAVLSSMPVLGRG*LHMLGQ
Trigger: CTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGAC...AGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp ATTGACTCCAGGTCCACAGAACATATAAGGACAGAACTCTGCAGAGCAAGCATGACAGAGCCAGTCGTCTaGGTCCACACCTCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: IDSRSTEHIRTELCRASMTEPVV*VHTSQE
Trigger: CTCCTGGGAGGTGTGGACCCAGACGACTGGCTCTGT...CATGCTTGCTCTGCAGAGTTCTGTCCTTATATGTTCTGTGGACCTGGAGTCAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp CAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACCTCAGGAACAGAGCCAGTCGTCTaGGTCCACACCTCCCAGGAG +
Preference number: 4 (lower is better)
Translates to: QKCAVLSSMPMVDKQTSGTEPVV*VHTSQE
Trigger: CTCCTGGGAGGTGTGGACCCAGACGACTGGCTCTGT...TCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAATCTCTGTTCTTGGTCTaGTTGAGGATTGGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: EIGRGQTQHTFPDWLLSQSLFLV*LRIGGS
Trigger: GGAACCTCCAATCCTCAACCAGACCAAGAACAGAGA...TTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TCTGCAGAGCAAGCATGTGGTCTAGAAAAGTTATCACATCCTGTTCAAGGTTCGCTCCCTGGGCTCTCCTaGGATCACTGTGGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SAEQACGLEKLSHPVQGSLPGLS*DHCGAA
Trigger: AGCAGCCCCACAGTGATCCCAGGAGAGCCCAGGGAG...CGAACCTTGAACAGGATGTGATAACTTTTCTAGACCACATGCTTGCTCTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp AATGAGGTAATGGCATTGTGCCTGGATTGTCAAGAGGGTGGTGATGGCCAAGGGGAAAGCCAGGAGACCTaGGAATCCCCAAGAGATACA +
Preference number: 4 (lower is better)
Translates to: NEVMALCLDCQEGGDGQGESQET*ESPRDT
Trigger: TGTATCTCTTGGGGATTCCCAGGTCTCCTGGCTTTC...CCCTTGGCCATCACCACCCTCTTGACAATCCAGGCACAATGCCATTACCTCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp GTGGAAAGAGCTATTCAGTCTCATCCAAAAGGACATTCTGAGGGACAAAACTGTCCGGAGCTGCAGGGCTaGGGCGATAGAAGAGCCCAA +
Preference number: 4 (lower is better)
Translates to: VERAIQSHPKGHSEGQNCPELQG*GDRRAQ
Trigger: TTGGGCTCTTCTATCGCCCCAGCCCTGCAGCTCCGG...ACAGTTTTGTCCCTCAGAATGTCCTTTTGGATGAGACTGAATAGCTCTTTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp TCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTGATTTCTGTACAGGCTCTTGCTGGGGTTaGGGATCTTTTCCTTCCACT +
Preference number: 4 (lower is better)
Translates to: SSLAIAVSSFVHISDFCTGSCWG*GSFPST
Trigger: AGTGGAAGGAAAAGATCCCCAACCCCAGCAAGAGCC...TGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTGATTTCTGTACACCTTTACCTCCATCCTaGAACAGGAGGCTCTTGCTG +
Preference number: 4 (lower is better)
Translates to: SSLAIAVSSFVHISDFCTPLPPS*NRRLLL
Trigger: CAGCAAGAGCCTCCTGTTCCAGGATGGAGGTAAAGG...TGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TTGATCTGCCTGCTTAGGGTTGAAATCAAATTTGAAGACATGTGGCTGCCATCCAAGAAGCCTGCTCTGTaGCCCCTGGAGAGCGGGGTT +
Preference number: 4 (lower is better)
Translates to: LICLLRVEIKFEDMWLPSKKPAL*PLESGV
Trigger: AACCCCGCTCTCCAGGGGCCACAGAGCAGGCTTCTT...GGATGGCAGCCACATGTCTTCAAATTTGATTTCAACCCTAAGCAGGCAGATCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp GAAAGAGCTATTCAGTCTCATCCAAAAGGACATTCTGAGGGACAAAACTGTTCAAGGCTCCCACCCACCTaGGGAGAACCCAGCTGGCCT +
Preference number: 4 (lower is better)
Translates to: ERAIQSHPKGHSEGQNCSRLPPT*GEPSWP
Trigger: AGGCCAGCTGGGTTCTCCCCAGGTGGGTGGGAGCCT...TGAACAGTTTTGTCCCTCAGAATGTCCTTTTGGATGAGACTGAATAGCTCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp TCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGGGCCCACTTCCTCCCTaGGCTCTCCTGGGATCACTG +
Preference number: 4 (lower is better)
Translates to: SNFSHRGRNVLCYHQCLWGPLPP*ALLGSL
Trigger: CAGTGATCCCAGGAGAGCCCAGGGAGGAAGTGGGCC...CCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
3UTR CAA 72 bp CTGCTGCAAATATGGCCCCAATGGCTGACGGAGCTGTaGTGCCTCCTGCACAAAATTAGCACATTCAAGGGA +
Preference number: 4 (lower is better)
Translates to: LLQIWPQWLTEL*CLLHKISTFKG
Trigger: TCCCTTGAATGTGCTAATTTTGTGCAGGAGGCACAACAGCTCCGTCAGCCATTGGGGCCATATTTGCAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp TGGAGAAATGATGCAATGTCCATTGACTCCAGGTCCACAGAACATATAAGGACACCTCTGGGCTCCATCTaGTGGGTCTCCCAGACAAGC +
Preference number: 4 (lower is better)
Translates to: WRNDAMSIDSRSTEHIRTPLGSI*WVSQTS
Trigger: GCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGG...TGTCCTTATATGTTCTGTGGACCTGGAGTCAATGGACATTGCATCATTTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp GTGGAAAGAGCTATTCAGTCTCATCCAAAAGGACATTCTGAGGGACAAAACTGTCACTGTGGGGCTGCTTaGCACAGGAGGAGCAGGATG +
Preference number: 4 (lower is better)
Translates to: VERAIQSHPKGHSEGQNCHCGAA*HRRSRM
Trigger: CATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTG...ACAGTTTTGTCCCTCAGAATGTCCTTTTGGATGAGACTGAATAGCTCTTTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp AGACTCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTAAGAAGCCTGCTCTGTaGCCCCTGGAGAGCGGGGTT +
Preference number: 4 (lower is better)
Translates to: RLQLFTQRQKCAVLSSMPKKPAL*PLESGV
Trigger: AACCCCGCTCTCCAGGGGCCACAGAGCAGGCTTCTT...AGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp GAGATTGGGAGGGGACAGACTCAGCACACCTTCCCAGACTGGCTATTGTCCCAACCTCTACTTGAACATTaGGAAGTTGCTCTGTGGATT +
Preference number: 4 (lower is better)
Translates to: EIGRGQTQHTFPDWLLSQPLLEH*EVALWI
Trigger: AATCCACAGAGCAACTTCCCAATGTTCAAGTAGAGG...TTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAGTCTGTCCCCTCCCAATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp CACCTTCAAGACGTTTGTGGTTTTCTTTGCTGCAGTGAACATAGACCAAGGAACCCCTGTCCCATCACCTaGGACAATGGGACCAGTTGC +
Preference number: 4 (lower is better)
Translates to: HLQDVCGFLCCSEHRPRNPCPIT*DNGTSC
Trigger: GCAACTGGTCCCATTGTCCCAGGTGATGGGACAGGG...GTTCCTTGGTCTATGTTCACTGCAGCAAAGAAAACCACAAACGTCTTGAAGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp CCAATACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACATGTGTACTGGCTGTGTaGACTGGGCTCAGGCACAGG +
Preference number: 4 (lower is better)
Translates to: PILKTHTKAMCKRDHEQTCVLAV*TGLRHR
Trigger: CCTGTGCCTGAGCCCAGTGCACACAGCCAGTACACA...TGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp CAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACCTCAGGAGGAACAGGAGGCTCTTaGTGGGGTTGGGGATCTTTT +
Preference number: 4 (lower is better)
Translates to: QKCAVLSSMPMVDKQTSGGTGGS*WGWGSF
Trigger: AAAAGATCCCCAACCCCAGCAAGAGCCTCCTGTTCC...TCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp ACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACACAGAGACTGTGTACTaGCTGTGTGCACTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: TEAEMCCVIINAYGGQADTETVY*LCALGS
Trigger: TGAGCCCAGTGCACACAGCCAGTACACAGTCTCTGT...GTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp ATTGACTCCAGGTCCACAGAACATATAAGGACAGAACTCTGCAGAGCAAGCATGTGGGAAGTTGCTCTGTaGATTCAGATGAGGCAGCTG +
Preference number: 4 (lower is better)
Translates to: IDSRSTEHIRTELCRASMWEVAL*IQMRQL
Trigger: CAGCTGCCTCATCTGAATCCACAGAGCAACTTCCCA...CATGCTTGCTCTGCAGAGTTCTGTCCTTATATGTTCTGTGGACCTGGAGTCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp TACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACAAGTCGAAAAACTGAATGGCTaGGGCCTGGGGCAAGGGTTG +
Preference number: 4 (lower is better)
Translates to: YSRLIQRPCANVTMNKQVEKLNG*GLGQGL
Trigger: CAACCCTTGCCCCAGGCCCCAGCCATTCAGTTTTTC...GACTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR TCA 90 bp TCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTGATTTCTGTACATATTTGGGTATTTTCTaGGTTTCCCAATGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: SSLAIAVSSFVHISDFCTYLGIF*VSQCRL
Trigger: CAGCCTGCATTGGGAAACTCAGAAAATACCCAAATA...TGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR TCA 90 bp CACCTTCAAGACGTTTGTGGTTTTCTTTGCTGCAGTGAACATAGACCAAGGAACGTCCTTCCAGCTCTCTaGCTTCTTCTTGTACTGGAC +
Preference number: 4 (lower is better)
Translates to: HLQDVCGFLCCSEHRPRNVLPAL*LLLVLD
Trigger: GTCCAGTACAAGAAGAAGTCAGAGAGCTGGAAGGAC...GTTCCTTGGTCTATGTTCACTGCAGCAAAGAAAACCACAAACGTCTTGAAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR TCA 90 bp TCTGGAGGGAGAACGAATGAACAGCTCAGCTGTCTAGACTTAGTCTCTGGGTGTAATACTTTAGGGACTTaGAAAACTGAATGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SGGRTNEQLSCLDLVSGCNTLGT*KTEWLG
Trigger: CCCCAGCCATTCAGTTTTTCAAGTCCCTAAAGTATT...ACACCCAGAGACTAAGTCTAGACAGCTGAGCTGTTCATTCGTTCTCCCTCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp CAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACCTCAGGAGAGCAGTGGAGAGACTaGATCCCATCAAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: QKCAVLSSMPMVDKQTSGEQWRD*IPSKKH
Trigger: ATGCTTCTTTGATGGGATCCAGTCTCTCCACTGCTC...TCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp CCAATACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACAACAGAGACTGTGTACTaGCTGTGTGCACTGGGCTCA +
Preference number: 4 (lower is better)
Translates to: PILKTHTKAMCKRDHEQTTETVY*LCALGS
Trigger: TGAGCCCAGTGCACACAGCCAGTACACAGTCTCTGT...TGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp CAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACCTCAGGATCTCTGTTCTTGGTCTaGTTGAGGATTGGAGGTTCC +
Preference number: 4 (lower is better)
Translates to: QKCAVLSSMPMVDKQTSGSLFLV*LRIGGS
Trigger: GGAACCTCCAATCCTCAACCAGACCAAGAACAGAGA...TCCTGAGGTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR TCA 90 bp TCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTGATTTCTGTACATGGACCTGGAAAGTGTaGTCAATGTATTTGGGTATT +
Preference number: 4 (lower is better)
Translates to: SSLAIAVSSFVHISDFCTWTWKV*SMYLGI
Trigger: AATACCCAAATACATTGATCACACTTTCCAGGTCCA...TGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TTTCAGTGTTCATATCTTAACATGGAGGCCGTTCCTGTTTGTTTCTCTAGAGCAATGTTGATTAGCCCCTaGGCATCCTCTGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: FQCSYLNMEAVPVCFSRAMLISP*ASSVSA
Trigger: GGCAGACACAGAGGATGCCCAGGGGCTAATCAACAT...TGCTCTAGAGAAACAAACAGGAACGGCCTCCATGTTAAGATATGAACACTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp ATCCAAAAGGACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTCAGCATAGATGCTGTTaGGTAGGAATAGCTTTGGCT +
Preference number: 4 (lower is better)
Translates to: IQKDILRDKTVHELSSQPQHRCC*VGIALA
Trigger: AGCCAAAGCTATTCCTACCCAACAGCATCTATGCTG...AGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTCCTTTTGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp TCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGGGTCTGGTTGAGGATTaGAGGTTCCATCTGGATGTG +
Preference number: 4 (lower is better)
Translates to: SNFSHRGRNVLCYHQCLWGLVED*RFHLDV
Trigger: CACATCCAGATGGAACCTCCAATCCTCAACCAGACC...CCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TTTCAGTGTTCATATCTTAACATGGAGGCCGTTCCTGTTTGTTTCTCTAGAGCAGGCTCTTGCTGGGGTTaGGGATCTTTTCCTTCCACT +
Preference number: 4 (lower is better)
Translates to: FQCSYLNMEAVPVCFSRAGSCWG*GSFPST
Trigger: AGTGGAAGGAAAAGATCCCCAACCCCAGCAAGAGCC...TGCTCTAGAGAAACAAACAGGAACGGCCTCCATGTTAAGATATGAACACTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CCA 90 bp GTGGAAAGAGCTATTCAGTCTCATCCAAAAGGACATTCTGAGGGACAAAACTGTTATGGGAAGAGTCATTaGGTTGTCCCTTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: VERAIQSHPKGHSEGQNCYGKSH*VVPCLL
Trigger: CAGGAGGCAAGGGACAACCCAATGACTCTTCCCATA...ACAGTTTTGTCCCTCAGAATGTCCTTTTGGATGAGACTGAATAGCTCTTTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR TCA 90 bp ATTGACTCCAGGTCCACAGAACATATAAGGACAGAACTCTGCAGAGCAAGCATGTATTTGGGTATTTTCTaGGTTTCCCAATGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: IDSRSTEHIRTELCRASMYLGIF*VSQCRL
Trigger: CAGCCTGCATTGGGAAACTCAGAAAATACCCAAATA...CATGCTTGCTCTGCAGAGTTCTGTCCTTATATGTTCTGTGGACCTGGAGTCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR GCA 90 bp TCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGCTAGGTTTTCTGTCTTaGTGTCCTTCCAGCTCTCTG +
Preference number: 4 (lower is better)
Translates to: SNFSHRGRNVLCYHQCLWLGFLS*CPSSSL
Trigger: CAGAGAGCTGGAAGGACAGCAAGACAGAAAACCTAG...CCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CCA 90 bp TCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTTCACAGACAAGTCCTaGTCTAGGTCCTCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: SNFSHRGRNVLCYHQCLWFTDKS*SRSSVS
Trigger: TGAGACTGAGGACCTAGACCAGGACTTGTCTGTGAA...CCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR GCA 90 bp CCAATACTCAAGACTCATACAAAGGCCATGTGCAAACGTGACCATGAACAAACATTCCCTTGTTCCAGGTaGTTAACAGAGACTGTGTAC +
Preference number: 4 (lower is better)
Translates to: PILKTHTKAMCKRDHEQTFPCSR*LTETVY
Trigger: GTACACAGTCTCTGTTAAGCACCTGGAACAAGGGAA...TGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTATGAGTCTTGAGTATTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR CAA 72 bp AGGAGACTGAAAGAATATAAGGCACATGTACATTTGTaGCAAAGTCTGCTGCAAATATGGCCCCAATGGCTG +
Preference number: 4 (lower is better)
Translates to: RRLKEYKAHVHL*QSLLQIWPQWL
Trigger: CAGCCATTGGGGCCATATTTGCAGCAGACTTTGCAACAAATGTACATGTGCCTTATATTCTTTCAGTCTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR CAA 72 bp AGAAGGAGACTGAAAGAATATAAGGCACATGTACATTaGTTGCAAAGTCTGCTGCAAATATGGCCCCAATGG +
Preference number: 4 (lower is better)
Translates to: RRRLKEYKAHVH*LQSLLQIWPQW
Trigger: CCATTGGGGCCATATTTGCAGCAGACTTTGCAACAAATGTACATGTGCCTTATATTCTTTCAGTCTCCTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
3UTR CAA 72 bp ATTATATTAGGGTCCTCTATAGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTTCATATGACACCCCCTGT +
Preference number: 4 (lower is better)
Translates to: IILGSSIVRGDT*LSSKCSYDTPC
Trigger: ACAGGGGGTGTCATATGAACATTTGGAAGACAACAACGTGTCACCTCTCACTATAGAGGACCCTAATATAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
CDS-3UTR TCA 90 bp TCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACCTGGAAAGTGTaGTCAATGTATTTGGGTATT +
Preference number: 4 (lower is better)
Translates to: SNFSHRGRNVLCYHQCLWWTWKV*SMYLGI
Trigger: AATACCCAAATACATTGATCACACTTTCCAGGTCCA...CCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACAGGCAGGGAGTGGGATaGGGGAGGCCCCAGGTAGGG +
Preference number: 5 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDRQGVG*GRPQVG
Trigger: CCCTACCTGGGGCCTCCCCAATCCCACTCCCTGCCT...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 90 bp TGGGATCACTGTGGGGCTGCTTGCCACAGGAGGAGCAGGATGGCCTaGAGGGGACGTGGCTGCCTGGCTCACACTTGGAGGCAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: WDHCGAACHRRSRMA*RGRGCLAHTWRQLH
Trigger: GTGGAGCTGCCTCCAAGTGTGAGCCAGGCAGCCACGTCCCCTCCAGGCCATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGATCCCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS GCA 90 bp CCTTGTCCCCTGGCTGGGAGTCCCAGTGAACCTCTGGGCTCCATCTaGTGGGTCTCCCAGACAAGCTTGAACCCGCGGACAGCCGAGTGC +
Preference number: 5 (lower is better)
Translates to: PCPLAGSPSEPLGSI*WVSQTSLNPRTAEC
Trigger: GCACTCGGCTGTCCGCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGGTTCACTGGGACTCCCAGCCAGGGGACAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS CCA 90 bp GAGGGGCTGATGTGGATGTCCTTGGGAGGGGGTGGCTGCACATGCTaGGCCAGTGGGACCATGAGCTGGATGCCCAGGTCACGATCTGGC +
Preference number: 5 (lower is better)
Translates to: EGLMWMSLGGGGCTC*ASGTMSWMPRSRSG
Trigger: GCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGACATCCACATCAGCCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS GCA 90 bp CCAGAGGGGCTGATGTGGATGTCCTTGGGAGGGGGTGGCTGCACATaGTGGGCCAGTGGGACCATGAGCTGGATGCCCAGGTCACGATCT +
Preference number: 5 (lower is better)
Translates to: PEGLMWMSLGGGGCT*WASGTMSWMPRSRS
Trigger: AGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGACATCCACATCAGCCCCTCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS GCA 90 bp GCTGCTTGCCACAGGAGGAGCAGGATGGCCTGGAGGGGACGTGGCTaGCTGGCTCACACTTGGAGGCAGCTCCACATAGTCCTCAAACCC +
Preference number: 5 (lower is better)
Translates to: AACHRRSRMAWRGRG*LAHTWRQLHIVLKP
Trigger: GGGTTTGAGGACTATGTGGAGCTGCCTCCAAGTGTGAGCCAGGCAGCCACGTCCCCTCCAGGCCATCCTGCTCCTCCTGTGGCAAGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 90 bp TGGGGCTGCTTGCCACAGGAGGAGCAGGATGGCCTGGAGGGGACGTaGCTGCCTGGCTCACACTTGGAGGCAGCTCCACATAGTCCTCAA +
Preference number: 5 (lower is better)
Translates to: WGCLPQEEQDGLEGT*LPGSHLEAAPHSPQ
Trigger: TTGAGGACTATGTGGAGCTGCCTCCAAGTGTGAGCCAGGCAGCCACGTCCCCTCCAGGCCATCCTGCTCCTCCTGTGGCAAGCAGCCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACCTGCCTGGCTCACACTaGGAGGCAGCTCCACATAGT +
Preference number: 5 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDLPGSH*EAAPHS
Trigger: ACTATGTGGAGCTGCCTCCAAGTGTGAGCCAGGCAG...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS TCA 90 bp CCAGTGAACCTCTGGGCTCCATCTGCTGGGTCTCCCAGACAAGCTTaGACCCGCGGACAGCCGAGTGCGCACACGGGCAGCATAGATGCT +
Preference number: 5 (lower is better)
Translates to: PVNLWAPSAGSPRQA*TRGQPSAHTGSIDA
Trigger: AGCATCTATGCTGCCCGTGTGCGCACTCGGCTGTCCGCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGGTTCACTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 90 bp CCCGTCGTAGTCAGAGATGGGCTTGACCCTCACCCTGGCGCAGTATaGGGTGTCCGGCTCCAGCTGGGGCAGGTCCATGCTATTGACTCG +
Preference number: 5 (lower is better)
Translates to: PVVVRDGLDPHPGAV*GVRLQLGQVHAIDS
Trigger: CGAGTCAATAGCATGGACCTGCCCCAGCTGGAGCCGGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCCCATCTCTGACTACGACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS TCA 90 bp CATTGCTCCACTCGCTCCAGATCCCGTCGTAGTCAGAGATGGGCTTaGCCCTCACCCTGGCGCAGTATGAGGTGTCCGGCTCCAGCTGGG +
Preference number: 5 (lower is better)
Translates to: HCSTRSRSRRSQRWA*PSPWRSMRCPAPAG
Trigger: CCCAGCTGGAGCCGGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCCCATCTCTGACTACGACGGGATCTGGAGCGAGTGGAGCAATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS GCA 90 bp AGACTGTGTACTGGCTGTGTGCACTGGGCTCAGGCACAGGTAGACTaGAGCGGTAGCGGGTGTAGACGCTGGCCTGCGGCTCCTTCACCA +
Preference number: 5 (lower is better)
Translates to: RLCTGCVHWAQAQVD*SGSGCRRWPAAPSP
Trigger: TGGTGAAGGAGCCGCAGGCCAGCGTCTACACCCGCTACCGCTGCAGTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGTACACAGTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS GCA 90 bp CCTGCTCTGTGGCCCCTGGAGAGCGGGGTTCTTAGTCGCGAAGGCTaGCATGCTGCCAGGAGGCCAGAGACCTTTACCTCCATCCTGGAA +
Preference number: 5 (lower is better)
Translates to: PALWPLESGVLSREG*HAARRPETFTSILE
Trigger: TTCCAGGATGGAGGTAAAGGTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCGACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 90 bp GATGTGGATGTCCTTGGGAGGGGGTGGCTGCACATGCTGGGCCAGTaGGACCATGAGCTGGATGCCCAGGTCACGATCTGGCTGGAAGGA +
Preference number: 5 (lower is better)
Translates to: DVDVLGRGWLHMLGQ*DHELDAQVTIWLEG
Trigger: TCCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGACATCCACATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 90 bp TGTCCTTGGGAGGGGGTGGCTGCACATGCTGGGCCAGTGGGACCATaGGCTGGATGCCCAGGTCACGATCTGGCTGGAAGGAGTAGTAGT +
Preference number: 5 (lower is better)
Translates to: CPWEGVAAHAGPVGP*AGCPGHDLAGRSSS
Trigger: ACTACTACTCCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 90 bp GGTTCTGTGGCTGGGCCTTGTCCCCATGCTGGGCCAGTGGGACCATaGGCTGGATGCCCAGGTCACGATCTGGCTGGAAGGAGTAGTAGT +
Preference number: 5 (lower is better)
Translates to: GSVAGPCPHAGPVGP*AGCPGHDLAGRSSS
Trigger: ACTACTACTCCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGGGGACAAGGCCCAGCCACAGAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230115.3
CDS CCA 90 bp GCTCCTTCACCACCGGAGAGCATTTCTCCTCCGGAGCTGCAGGGCTaGGGCGATAGAAGAGCCCAAAGGAAACAGAGCCAGTCGTCTGGG +
Preference number: 5 (lower is better)
Translates to: APSPPESISPPELQG*GDRRAQRKQSQSSG
Trigger: CCCAGACGACTGGCTCTGTTTCCTTTGGGCTCTTCTATCGCCCCAGCCCTGCAGCTCCGGAGGAGAAATGCTCTCCGGTGGTGAAGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 90 bp GCATTGAAGGTTCTGTGGCTGGGCCTTGTCCCCATGCTGGGCCAGTaGGACCATGAGCTGGATGCCCAGGTCACGATCTGGCTGGAAGGA +
Preference number: 5 (lower is better)
Translates to: ALKVLWLGLVPMLGQ*DHELDAQVTIWLEG
Trigger: TCCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGGGGACAAGGCCCAGCCACAGAACCTTCAATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp GCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGACTGCCTGGCTCACACTaGGAGGCAGCTCCACATAGT +
Preference number: 5 (lower is better)
Translates to: AHPHRPPHSNRSEGQEGRLPGSH*EAAPHS
Trigger: ACTATGTGGAGCTGCCTCCAAGTGTGAGCCAGGCAG...TCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp CTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCAGGGACAGGTAGTTTCTGTGGCTGGGCCTaGTCCCCATGCTGGGCCAGT +
Preference number: 5 (lower is better)
Translates to: LSTPSQTGYCPKGAGTGSFCGWA*SPCWAS
Trigger: ACTGGCCCAGCATGGGGACAAGGCCCAGCCACAGAA...ACTACCTGTCCCTGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACCCTAGGTTTTCTGTCTaGCTGTCCTTCCAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDPRFSV*LSFQLS
Trigger: AGAGAGCTGGAAGGACAGCAAGACAGAAAACCTAGG...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp GCTCCCTGTGGTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTGGCCCTGGTCCAAGTGTACTCATaGCTCCACTCGCTCCAGATC +
Preference number: 5 (lower is better)
Translates to: APCGLQAGPTLHIHSLALVQVYS*LHSLQI
Trigger: GATCTGGAGCGAGTGGAGCAATGAGTACACTTGGAC...CAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCACAGGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230753.2
CDS CCA 90 bp GGCTTGACCCTCACCCTGGCGCAGTATGAGGTGTCCGGCTCCAGCTaGGGCAGGTCCATGCTATTGACTCGACCTAGGTTTTCTGTCTTG +
Preference number: 5 (lower is better)
Translates to: GLTLTLAQYEVSGSS*GRSMLLTRPRFSVL
Trigger: CAAGACAGAAAACCTAGGTCGAGTCAATAGCATGGACCTGCCCCAGCTGGAGCCGGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCCTGATGTGGATGTCCTaGGGAGGGGGTGGCTGCACA +
Preference number: 5 (lower is better)
Translates to: CELREASVVMLRLRTTGCLMWMS*GGGGCT
Trigger: TGTGCAGCCACCCCCTCCCAAGGACATCCACATCAG...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CAA 90 bp GCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGAGTCCAAGTGTACTCATaGCTCCACTCGCTCCAGATC +
Preference number: 5 (lower is better)
Translates to: AHPHRPPHSNRSEGQEGRVQVYS*LHSLQI
Trigger: GATCTGGAGCGAGTGGAGCAATGAGTACACTTGGAC...TCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp CAGGAGTTCTTCAACCCTAAACAGACCATGCAGAGCTCACCCTCACAGGCCTCCTGGGACCAGTTGCACTaGACCTCCAGGGGGCAGACA +
Preference number: 5 (lower is better)
Translates to: QEFFNPKQTMQSSPSQASWDQLH*TSRGQT
Trigger: TGTCTGCCCCCTGGAGGTCAAGTGCAACTGGTCCCA...GGAGGCCTGTGAGGGTGAGCTCTGCATGGTCTGTTTAGGGTTGAAGAACTCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp CTCAGCACACCTTCCCAGACTGGCTATTGTCCCAAGGGGGCAGGGACAGGTAGTTCATTGGGTTGTCCCTaGCCTCCTGTTTCTCCACGC +
Preference number: 5 (lower is better)
Translates to: LSTPSQTGYCPKGAGTGSSLGCP*PPVSPR
Trigger: GCGTGGAGAAACAGGAGGCAAGGGACAACCCAATGA...ACTACCTGTCCCTGCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTGCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS TCA 90 bp CGCAGTATGAGGTGTCCGGCTCCAGCTGGGGCAGGTCCATGCTATTaGCTCGACCTAGGTTTTCTGTCTTGCTGTCCTTCCAGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: RSMRCPAPAGAGPCY*LDLGFLSCCPSSSL
Trigger: CAGAGAGCTGGAAGGACAGCAAGACAGAAAACCTAGGTCGAGTCAATAGCATGGACCTGCCCCAGCTGGAGCCGGACACCTCATACTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp AGGCTGAGGACCACAGGCTGCGGTGCCAGGCTGCTGGTGAGATTGGGAGGGGACTGGGTAGGAATAGCTTaGGCTCTAAATTCACCTGAA +
Preference number: 5 (lower is better)
Translates to: RLRTTGCGARLLVRLGGDWVGIA*ALNSPE
Trigger: TTCAGGTGAATTTAGAGCCAAAGCTATTCCTACCCA...GTCCCCTCCCAATCTCACCAGCAGCCTGGCACCGCAGCCTGTGGTCCTCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CAA 90 bp AGACCATGCAGAGCTCACCCTCACAGGCCTCCCCACTCCAACAGGTCGGAGGGACAAACTCTATGTCCTTaGATGAAAGCCAGGAGACCT +
Preference number: 5 (lower is better)
Translates to: RPCRAHPHRPPHSNRSEGQTLCP*MKARRP
Trigger: AGGTCTCCTGGCTTTCATCAAAGGACATAGAGTTTG...TCCCTCCGACCTGTTGGAGTGGGGAGGCCTGTGAGGGTGAGCTCTGCATGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CAA 90 bp ACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACTTCTGTGGCTGGGCCTaGTCCCCTGGCTGGGAGTCC +
Preference number: 5 (lower is better)
Translates to: TEAEMCCVIINAYGGQADFCGWA*SPGWES
Trigger: GGACTCCCAGCCAGGGGACAAGGCCCAGCCACAGAA...GTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CAA 90 bp TCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTGATTTCTGTACATCACTGTGGGGCTGCTaGCCACAGGAGGAGCAGGAT +
Preference number: 5 (lower is better)
Translates to: SSLAIAVSSFVHISDFCTSLWGC*PQEEQD
Trigger: ATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGA...TGTACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp AGGCCTCCCCACTCCAACAGGTCGGAGGGACAGGAAGGAAGATCCCATAGAAGGGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTTCA +
Preference number: 5 (lower is better)
Translates to: RPPHSNRSEGQEGRSHRRVRGDT*LSSKCS
Trigger: TGAACATTTGGAAGACAACAACGTGTCACCTCTCAC...CCTTCTATGGGATCTTCCTTCCTGTCCCTCCGACCTGTTGGAGTGGGGAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp AATGAGGTAATGGCATTGTGCCTGGATTGTCAAGAGGGTGGTGATGGCCAAGGGTCATTGGGTTGTCCCTaGCCTCCTGTTTCTCCACGC +
Preference number: 5 (lower is better)
Translates to: NEVMALCLDCQEGGDGQGSLGCP*PPVSPR
Trigger: GCGTGGAGAAACAGGAGGCAAGGGACAACCCAATGA...CCCTTGGCCATCACCACCCTCTTGACAATCCAGGCACAATGCCATTACCTCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS CCA 90 bp ATGCTGGGCCAGTGGGACCATGAGCTGGATGCCCAGGTCACGATCTaGCTGGAAGGAGTAGTAGTCGTTATCTCCATTAGAAAATCGTGT +
Preference number: 5 (lower is better)
Translates to: MLGQWDHELDAQVTI*LEGVVVVISIRKSC
Trigger: ACACGATTTTCTAATGGAGATAACGACTACTACTCCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp TGTGAACTCAGAGAGGCTTCTGTGGTGATGCTCAGGCTGAGGACCACAGGCTGCGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTTCA +
Preference number: 5 (lower is better)
Translates to: CELREASVVMLRLRTTGCVRGDT*LSSKCS
Trigger: TGAACATTTGGAAGACAACAACGTGTCACCTCTCAC...GCAGCCTGTGGTCCTCAGCCTGAGCATCACCACAGAAGCCTCTCTGAGTTCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp TTTCAGTGTTCATATCTTAACATGGAGGCCGTTCCTGTTTGTTTCTCTAGAGCAAGGCAGGGAGTGGGATaGGGGAGGCCCCAGGTAGGG +
Preference number: 5 (lower is better)
Translates to: FQCSYLNMEAVPVCFSRARQGVG*GRPQVG
Trigger: CCCTACCTGGGGCCTCCCCAATCCCACTCCCTGCCT...TGCTCTAGAGAAACAAACAGGAACGGCCTCCATGTTAAGATATGAACACTGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS CCA 90 bp AGAGACCTTTACCTCCATCCTGGAACAGGAGGCTCTTGCTGGGGTTaGGGATCTTTTCCTTCCACTTCCTGTATGTCCTGTACCCATAAA +
Preference number: 5 (lower is better)
Translates to: RDLYLHPGTGGSCWG*GSFPSTSCMSCTHK
Trigger: TTTATGGGTACAGGACATACAGGAAGTGGAAGGAAAAGATCCCCAACCCCAGCAAGAGCCTCCTGTTCCAGGATGGAGGTAAAGGTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp TCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTCACTGTGGGGCTGCTaGCCACAGGAGGAGCAGGAT +
Preference number: 5 (lower is better)
Translates to: SNFSHRGRNVLCYHQCLWSLWGC*PQEEQD
Trigger: ATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGA...CCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 90 bp CCAATGCAGGCTGTAGCTGTCTCTGTTCTTGGTCTGGTTGAGGATTaGAGGTTCCATCTGGATGTGGTAATAGCTCATGATGAACTTCCC +
Preference number: 5 (lower is better)
Translates to: PMQAVAVSVLGLVED*RFHLDVVIAHDELP
Trigger: GGGAAGTTCATCATGAGCTATTACCACATCCAGATGGAACCTCCAATCCTCAACCAGACCAAGAACAGAGACAGCTACAGCCTGCATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp GAAAGAGCTATTCAGTCTCATCCAAAAGGACATTCTGAGGGACAAAACTGTTCATGGGACCAGTTGCACTaGACCTCCAGGGGGCAGACA +
Preference number: 5 (lower is better)
Translates to: ERAIQSHPKGHSEGQNCSWDQLH*TSRGQT
Trigger: TGTCTGCCCCCTGGAGGTCAAGTGCAACTGGTCCCA...TGAACAGTTTTGTCCCTCAGAATGTCCTTTTGGATGAGACTGAATAGCTCTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CAA 90 bp ATCCAAAAGGACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTCTGTTCTTGGTCTGGTaGAGGATTGGAGGTTCCATC +
Preference number: 5 (lower is better)
Translates to: IQKDILRDKTVHELSSQPLFLVW*RIGGSI
Trigger: GATGGAACCTCCAATCCTCAACCAGACCAAGAACAG...AGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTCCTTTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CAA 90 bp ACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTATGGTGGACAAGCAGACCCTAGGTTTTCTGTCTaGCTGTCCTTCCAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: TEAEMCCVIINAYGGQADPRFSV*LSFQLS
Trigger: AGAGAGCTGGAAGGACAGCAAGACAGAAAACCTAGG...GTCTGCTTGTCCACCATAGGCATTGATGATAACACAGCACATTTCTGCCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp TTGATCTGCCTGCTTAGGGTTGAAATCAAATTTGAAGACATGTGGCTGCCATCCGTCCAAGTGTACTCATaGCTCCACTCGCTCCAGATC +
Preference number: 5 (lower is better)
Translates to: LICLLRVEIKFEDMWLPSVQVYS*LHSLQI
Trigger: GATCTGGAGCGAGTGGAGCAATGAGTACACTTGGAC...GGATGGCAGCCACATGTCTTCAAATTTGATTTCAACCCTAAGCAGGCAGATCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS CCA 90 bp CTGACTTCTTCTTGTACTGGACCTGGAAAGTGTGATCAATGTATTTaGGTATTTTCTGAGTTTCCCAATGCAGGCTGTAGCTGTCTCTGT +
Preference number: 5 (lower is better)
Translates to: LTSSCTGPGKCDQCI*VFSEFPNAGCSCLC
Trigger: ACAGAGACAGCTACAGCCTGCATTGGGAAACTCAGAAAATACCCAAATACATTGATCACACTTTCCAGGTCCAGTACAAGAAGAAGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS-3UTR CAA 90 bp ATCCAAAAGGACATTCTGAGGGACAAAACTGTTCATGAGCTCAGCTCCCAACCTAGAGGTGACACGTTGTaGTCTTCCAAATGTTCATAT +
Preference number: 5 (lower is better)
Translates to: IQKDILRDKTVHELSSQPRGDTL*SSKCSY
Trigger: ATATGAACATTTGGAAGACAACAACGTGTCACCTCT...AGGTTGGGAGCTGAGCTCATGAACAGTTTTGTCCCTCAGAATGTCCTTTTGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS-3UTR CAA 90 bp AGACTCCAACTTTTCACACAGAGGCAGAAATGTGCTGTGTTATCATCAATGCCTAGAGGTGACACGTTGTaGTCTTCCAAATGTTCATAT +
Preference number: 5 (lower is better)
Translates to: RLQLFTQRQKCAVLSSMPRGDTL*SSKCSY
Trigger: ATATGAACATTTGGAAGACAACAACGTGTCACCTCT...AGGCATTGATGATAACACAGCACATTTCTGCCTCTGTGTGAAAAGTTGGAGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 72 bp CCTCTGGGCTCCATCTGCTGGGTCTCCCAGACAAGCTaGAACCCGCGGACAGCCGAGTGCGCACACGGGCAG +
Preference number: 6 (lower is better)
Translates to: PLGSICWVSQTS*NPRTAECAHGQ
Trigger: CTGCCCGTGTGCGCACTCGGCTGTCCGCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 72 bp GAGGGGGTGGCTGCACATGCTGGGCCAGTGGGACCATaGGCTGGATGCCCAGGTCACGATCTGGCTGGAAGG +
Preference number: 6 (lower is better)
Translates to: EGVAAHAGPVGP*AGCPGHDLAGR
Trigger: CCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 72 bp GCTGGGCCTTGTCCCCATGCTGGGCCAGTGGGACCATaGGCTGGATGCCCAGGTCACGATCTGGCTGGAAGG +
Preference number: 6 (lower is better)
Translates to: AGPCPHAGPVGP*AGCPGHDLAGR
Trigger: CCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGGGGACAAGGCCCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230115.3
CDS GCA 72 bp ACTGGCTGTGTGCACTGGGCTCAGGCACAGGTAGACTaGAGCGGTAGCGGGTGTAGACGCTGGCCTGCGGCT +
Preference number: 6 (lower is better)
Translates to: TGCVHWAQAQVD*SGSGCRRWPAA
Trigger: AGCCGCAGGCCAGCGTCTACACCCGCTACCGCTGCAGTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp GTCCTTGGGAGGGGGTGGCTGCACATGCTGGGCCAGTaGGACCATGAGCTGGATGCCCAGGTCACGATCTGG +
Preference number: 6 (lower is better)
Translates to: VLGRGWLHMLGQ*DHELDAQVTIW
Trigger: CCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 72 bp GTCAGAGATGGGCTTGACCCTCACCCTGGCGCAGTATaGGGTGTCCGGCTCCAGCTGGGGCAGGTCCATGCT +
Preference number: 6 (lower is better)
Translates to: VRDGLDPHPGAV*GVRLQLGQVHA
Trigger: AGCATGGACCTGCCCCAGCTGGAGCCGGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCCCATCTCTGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS GCA 72 bp CTGATGTGGATGTCCTTGGGAGGGGGTGGCTGCACATaGTGGGCCAGTGGGACCATGAGCTGGATGCCCAGG +
Preference number: 6 (lower is better)
Translates to: LMWMSLGGGGCT*WASGTMSWMPR
Trigger: CCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGACATCCACATCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS GCA 72 bp GAGGGGCTGATGTGGATGTCCTTGGGAGGGGGTGGCTaGACATGCTGGGCCAGTGGGACCATGAGCTGGATG +
Preference number: 6 (lower is better)
Translates to: EGLMWMSLGGGG*TCWASGTMSWM
Trigger: CATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGACATCCACATCAGCCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS GCA 72 bp TGGCCCCTGGAGAGCGGGGTTCTTAGTCGCGAAGGCTaGCATGCTGCCAGGAGGCCAGAGACCTTTACCTCC +
Preference number: 6 (lower is better)
Translates to: WPLESGVLSREG*HAARRPETFTS
Trigger: GGAGGTAAAGGTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCGACTAAGAACCCCGCTCTCCAGGGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp ATCACTGTGGGGCTGCTTGCCACAGGAGGAGCAGGATaGCCTGGAGGGGACGTGGCTGCCTGGCTCACACTT +
Preference number: 6 (lower is better)
Translates to: ITVGLLATGGAG*PGGDVAAWLTL
Trigger: AAGTGTGAGCCAGGCAGCCACGTCCCCTCCAGGCCATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp CCCAACCTGCTGAAGAACAAGGAGGCCTTCGGGATGTaGGGATGCTGGGCCCACTTCCTCCCTGGGCTCTCC +
Preference number: 6 (lower is better)
Translates to: PNLLKNKEAFGM*GCWAHFLPGLS
Trigger: GGAGAGCCCAGGGAGGAAGTGGGCCCAGCATCCCCACATCCCGAAGGCCTCCTTGTTCTTCAGCAGGTTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 90 bp CCCAGTGAACCTCTGGGCTCCATCTGCTGGGTCTCCCAGACAAGCTaGAACCCGCGGACAGCCGAGTGCGCACACGGGCAGCATAGATGC +
Preference number: 6 (lower is better)
Translates to: PSEPLGSICWVSQTS*NPRTAECAHGQHRC
Trigger: GCATCTATGCTGCCCGTGTGCGCACTCGGCTGTCCGCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGGTTCACTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS GCA 72 bp CTGGCTGGGAGTCCCAGTGAACCTCTGGGCTCCATCTaGTGGGTCTCCCAGACAAGCTTGAACCCGCGGACA +
Preference number: 6 (lower is better)
Translates to: LAGSPSEPLGSI*WVSQTSLNPRT
Trigger: TGTCCGCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGGTTCACTGGGACTCCCAGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS CCA 72 bp ATGTGGATGTCCTTGGGAGGGGGTGGCTGCACATGCTaGGCCAGTGGGACCATGAGCTGGATGCCCAGGTCA +
Preference number: 6 (lower is better)
Translates to: MWMSLGGGGCTC*ASGTMSWMPRS
Trigger: TGACCTGGGCATCCAGCTCATGGTCCCACTGGCCCAGCATGTGCAGCCACCCCCTCCCAAGGACATCCACAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 72 bp ACTCGCTCCAGATCCCGTCGTAGTCAGAGATGGGCTTaGCCCTCACCCTGGCGCAGTATGAGGTGTCCGGCT +
Preference number: 6 (lower is better)
Translates to: TRSRSRRSQRWA*PSPWRSMRCPA
Trigger: AGCCGGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCCCATCTCTGACTACGACGGGATCTGGAGCGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp CCACCGGAGAGCATTTCTCCTCCGGAGCTGCAGGGCTaGGGCGATAGAAGAGCCCAAAGGAAACAGAGCCAG +
Preference number: 6 (lower is better)
Translates to: PPESISPPELQG*GDRRAQRKQSQ
Trigger: CTGGCTCTGTTTCCTTTGGGCTCTTCTATCGCCCCAGCCCTGCAGCTCCGGAGGAGAAATGCTCTCCGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS GCA 72 bp CTCTGTCACCTCGTGTCCCCAGCAGAGAGCCACCAGTaGCATGTAGCACAGCCCCCATGTGAGTGCCATTTG +
Preference number: 6 (lower is better)
Translates to: LCHLVSPAESHQ*HVAQPPCECHL
Trigger: CAAATGGCACTCACATGGGGGCTGTGCTACATGGCACTGGTGGCTCTCTGCTGGGGACACGAGGTGACAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp CTCACCCTGGCGCAGTATGAGGTGTCCGGCTCCAGCTaGGGCAGGTCCATGCTATTGACTCGACCTAGGTTT +
Preference number: 6 (lower is better)
Translates to: LTLAQYEVSGSS*GRSMLLTRPRF
Trigger: AAACCTAGGTCGAGTCAATAGCATGGACCTGCCCCAGCTGGAGCCGGACACCTCATACTGCGCCAGGGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 90 bp GCGCAGTATGAGGTGTCCGGCTCCAGCTGGGGCAGGTCCATGCTATaGACTCGACCTAGGTTTTCTGTCTTGCTGTCCTTCCAGCTCTCT +
Preference number: 6 (lower is better)
Translates to: AQYEVSGSSWGRSML*TRPRFSVLLSFQLS
Trigger: AGAGAGCTGGAAGGACAGCAAGACAGAAAACCTAGGTCGAGTCAATAGCATGGACCTGCCCCAGCTGGAGCCGGACACCTCATACTGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 90 bp TCACAGACAAGTCCTGGTCTAGGTCCTCAGTCTCAGAACACAGACTaGGAGAGGGTGGCTTACTGTGTGGTGAGAGGGAGCCAGGTCCCA +
Preference number: 6 (lower is better)
Translates to: SQTSPGLGPQSQNTD*ERVAYCVVRGSQVP
Trigger: TGGGACCTGGCTCCCTCTCACCACACAGTAAGCCACCCTCTCCAAGTCTGTGTTCTGAGACTGAGGACCTAGACCAGGACTTGTCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS GCA 72 bp TGGGCATCACCCAGTCAGTCGTCCAAGTGTACTCATTaGTCCACTCGCTCCAGATCCCGTCGTAGTCAGAGA +
Preference number: 6 (lower is better)
Translates to: WASPSQSSKCTH*STRSRSRRSQR
Trigger: TCTCTGACTACGACGGGATCTGGAGCGAGTGGAGCAATGAGTACACTTGGACGACTGACTGGGTGATGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 72 bp AGTCCTGGTCTAGGTCCTCAGTCTCAGAACACAGACTaGGAGAGGGTGGCTTACTGTGTGGTGAGAGGGAGC +
Preference number: 6 (lower is better)
Translates to: SPGLGPQSQNTD*ERVAYCVVRGS
Trigger: GCTCCCTCTCACCACACAGTAAGCCACCCTCTCCAAGTCTGTGTTCTGAGACTGAGGACCTAGACCAGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp TTCCCTTGTTCCAGGTGCTTAACAGAGACTGTGTACTaGCTGTGTGCACTGGGCTCAGGCACAGGTAGACTG +
Preference number: 6 (lower is better)
Translates to: FPCSRCLTETVY*LCALGSGTGRL
Trigger: CAGTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGTACACAGTCTCTGTTAAGCACCTGGAACAAGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp CAGTGGGACCATGAGCTGGATGCCCAGGTCACGATCTaGCTGGAAGGAGTAGTAGTCGTTATCTCCATTAGA +
Preference number: 6 (lower is better)
Translates to: QWDHELDAQVTI*LEGVVVVISIR
Trigger: TCTAATGGAGATAACGACTACTACTCCTTCCAGCCAGATCGTGACCTGGGCATCCAGCTCATGGTCCCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp TACCTCCATCCTGGAACAGGAGGCTCTTGCTGGGGTTaGGGATCTTTTCCTTCCACTTCCTGTATGTCCTGT +
Preference number: 6 (lower is better)
Translates to: YLHPGTGGSCWG*GSFPSTSCMSC
Trigger: ACAGGACATACAGGAAGTGGAAGGAAAAGATCCCCAACCCCAGCAAGAGCCTCCTGTTCCAGGATGGAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 90 bp AGCTGGGGCAGGTCCATGCTATTGACTCGACCTAGGTTTTCTGTCTaGCTGTCCTTCCAGCTCTCTGACTTCTTCTTGTACTGGACCTGG +
Preference number: 6 (lower is better)
Translates to: SWGRSMLLTRPRFSV*LSFQLSDFFLYWTW
Trigger: CCAGGTCCAGTACAAGAAGAAGTCAGAGAGCTGGAAGGACAGCAAGACAGAAAACCTAGGTCGAGTCAATAGCATGGACCTGCCCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 90 bp AGGAGTCCTGAAGCCGCTTATAAGCCACCTCAAACTCTATGTCCTTaGATGAAAGCCAGGAGACCTGGGAATCCCCAAGAGATACACTCC +
Preference number: 6 (lower is better)
Translates to: RSPEAAYKPPQTLCP*MKARRPGNPQEIHS
Trigger: GGAGTGTATCTCTTGGGGATTCCCAGGTCTCCTGGCTTTCATCAAAGGACATAGAGTTTGAGGTGGCTTATAAGCGGCTTCAGGACTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS CAA 72 bp GAAGCCGCTTATAAGCCACCTCAAACTCTATGTCCTTaGATGAAAGCCAGGAGACCTGGGAATCCCCAAGAG +
Preference number: 6 (lower is better)
Translates to: EAAYKPPQTLCP*MKARRPGNPQE
Trigger: CTCTTGGGGATTCCCAGGTCTCCTGGCTTTCATCAAAGGACATAGAGTTTGAGGTGGCTTATAAGCGGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 72 bp CTGTTGGGTAGGAATAGCTTTGGCTCTAAATTCACCTaGAAGTTGCTAGTGTGGAGACTGGAGGCATCCTCC +
Preference number: 6 (lower is better)
Translates to: LLGRNSFGSKFT*KLLVWRLEASS
Trigger: GGAGGATGCCTCCAGTCTCCACACTAGCAACTTTCAGGTGAATTTAGAGCCAAAGCTATTCCTACCCAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096356.5
CDS TCA 72 bp AATGCAGGCTGTAGCTGTCTCTGTTCTTGGTCTGGTTaGGGATTGGAGGTTCCATCTGGATGTGGTAATAGC +
Preference number: 6 (lower is better)
Translates to: NAGCSCLCSWSG*GLEVPSGCGNS
Trigger: GCTATTACCACATCCAGATGGAACCTCCAATCCTCAACCAGACCAAGAACAGAGACAGCTACAGCCTGCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CAA 90 bp TGGAGGTTCCATCTGGATGTGGTAATAGCTCATGATGAACTTCCCTaGTTCCAGGTGCTTAACAGAGACTGTGTACTGGCTGTGTGCACT +
Preference number: 6 (lower is better)
Translates to: WRFHLDVVIAHDELP*FQVLNRDCVLAVCT
Trigger: AGTGCACACAGCCAGTACACAGTCTCTGTTAAGCACCTGGAACAAGGGAAGTTCATCATGAGCTATTACCACATCCAGATGGAACCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3
CDS CCA 72 bp GCTGTAGCTGTCTCTGTTCTTGGTCTGGTTGAGGATTaGAGGTTCCATCTGGATGTGGTAATAGCTCATGAT +
Preference number: 6 (lower is better)
Translates to: AVAVSVLGLVED*RFHLDVVIAHD
Trigger: ATCATGAGCTATTACCACATCCAGATGGAACCTCCAATCCTCAACCAGACCAAGAACAGAGACAGCTACAGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096356.5
ENSMUST00000230115.3