RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CSF2RB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071713

Ensembl transcript IDs: ENSMUST00000096355.4, ENSMUST00000229034.2, ENSMUST00000229678.2, ENSMUST00000230264.3

Found 237 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGGCTCACCTGAGACTCCCACCTTTCACACAGAGCCAGAAATGTaGTGTATTACCAATGCCTGTGGTGGACAAGCCGACCTCAGCAGT +
Preference number: 1 (lower is better)
Translates to: RGSPETPTFHTEPEM*CITNACGGQADLSS
Trigger: ACTGCTGAGGTCGGCTTGTCCACCACAGGCATTGGTAATACAGCACATTTCTGGCTCTGTGTGAAAGGTGGGAGTCTCAGGTGAGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR CCA 90 bp CACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTaGCTCGGCAACCCATCTCATAGCAATGCAGACACGCAATGGCTG +
Preference number: 1 (lower is better)
Translates to: HLQQRPLQTGTQRQV*LGNPSHSNADTQWL
Trigger: CAGCCATTGCGTGTCTGCATTGCTATGAGATGGGTTGCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 90 bp AAAGAACATAAACAAAGGCACGTGTGCACTTACAGCAAAGACCCCTaGAAACAGGGACCCAAAGACAGGTGTGGCTCGGCAACCCATCTC +
Preference number: 1 (lower is better)
Translates to: KEHKQRHVCTYSKDP*KQGPKDRCGSATHL
Trigger: GAGATGGGTTGCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTGCACACGTGCCTTTGTTTATGTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 90 bp GCTCAACTTCCAAGTCTACTTCCTCGCTACCACCCAAAAAGCCAATaGTCGAGACACACACAAAGGCCATGTGCAAACGTGACCATGAAC +
Preference number: 1 (lower is better)
Translates to: AQLPSLLPRYHPKSQ*SRHTQRPCANVTMN
Trigger: GTTCATGGTCACGTTTGCACATGGCCTTTGTGTGTGTCTCGAGCATTGGCTTTTTGGGTGGTAGCGAGGAAGTAGACTTGGAAGTTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 90 bp TCCCTCCAGCCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTaGTTTCTGTATATAAGGAGGGTACCAAGTACCCTCTACAAGGTT +
Preference number: 1 (lower is better)
Translates to: SLQPGHSCVQLCAHQ*FLYIRRVPSTLYKV
Trigger: AACCTTGTAGAGGGTACTTGGTACCCTCCTTATATACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGGCTGGAGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 90 bp GTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTTaGTCTGCCACATTCTATGTCTGCCATCATGTGAGTGAGGCCAGG +
Preference number: 1 (lower is better)
Translates to: VSGFLCCNEQRPRDI*SATFYVCHHVSEAR
Trigger: CCTGGCCTCACTCACATGATGGCAGACATAGAATGTGGCAGATCAAATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 90 bp TTTAGACACAGAAGGAACCAGAAAGAACATAAACAAAGGCACGTGTaGACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGG +
Preference number: 1 (lower is better)
Translates to: FRHRRNQKEHKQRHV*TYSKDPCKQGPKDR
Trigger: CCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTGCACACGTGCCTTTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 90 bp ACACAAAGGCCATGTGCAAACGTGACCATGAACAAACAACTCCAGTaGGAACAGAATGAGGTAATGGCATTGTGCATGGATTGTCAAGAG +
Preference number: 1 (lower is better)
Translates to: TQRPCANVTMNKQLQ*EQNEVMALCMDCQE
Trigger: CTCTTGACAATCCATGCACAATGCCATTACCTCATTCTGTTCTCACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp CTCATCCCCACTCCAACAGGTCAGAGGAATAGGAAGGAAGTTCCCATAGAAGGCGTGCCAGGCTGCTGGTaGGATTGGGAGGAGACAGAC +
Preference number: 2 (lower is better)
Translates to: LIPTPTGQRNRKEVPIEGVPGCW*DWEETD
Trigger: GTCTGTCTCCTCCCAATCTCACCAGCAGCCTGGCAC...GCCTTCTATGGGAACTTCCTTCCTATTCCTCTGACCTGTTGGAGTGGGGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp ACTACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTAGTGCTCCTAACCTCTaGGCCATCTCTCCAGCCCTC +
Preference number: 2 (lower is better)
Translates to: TTDGCEPPCSCWELNSEPSAPNL*AISPAL
Trigger: GAGGGCTGGAGAGATGGCTCAGAGGTTAGGAGCACT...AGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
3UTR CAA 90 bp CTAGACTTAGTATCTGGGTGTGCTGTCCAGGATCCACAACTAAGCTaGTCTGCAGTTGAGACCATGAGTTCTAGACACACAGCCTTCCCA +
Preference number: 2 (lower is better)
Translates to: LDLVSGCAVQDPQLS*SAVETMSSRHTAFP
Trigger: TGGGAAGGCTGTGTGTCTAGAACTCATGGTCTCAACTGCAGACAAGCTTAGTTGTGGATCCTGGACAGCACACCCAGATACTAAGTCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp TGCAAGGCACTTTGGCATTCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCACACAGCCTTCCCATTaGTTCTCATCCCTCCAGCCT +
Preference number: 2 (lower is better)
Translates to: CKALWHSHLNMEATPVCFTQPSH*FSSLQP
Trigger: AGGCTGGAGGGATGAGAAGCAATGGGAAGGCTGTGT...GAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp CACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAGCACAAAACTGTTCATaGGCTCAACTTCCAAGTCTA +
Preference number: 2 (lower is better)
Translates to: HVWPTRGHVGRAIQSHPKAQNCS*AQLPSL
Trigger: TAGACTTGGAAGTTGAGCTCATGAACAGTTTTGTGC...TTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR CCA 90 bp TCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTTACCAATGCCTGTGGTaGACAAGCCGACCTCAGCAG +
Preference number: 2 (lower is better)
Translates to: SRSIEHIKTELCREIMCSYQCLW*TSRPQQ
Trigger: CTGCTGAGGTCGGCTTGTCCACCACAGGCATTGGTA...AGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp TCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTAGAAAAGTGCCAGGCTGCTGGTaGGATTGGGAGGAGACAGAC +
Preference number: 2 (lower is better)
Translates to: SIEHIKTELCREIMCSRKVPGCW*DWEETD
Trigger: GTCTGTCTCCTCCCAATCTCACCAGCAGCCTGGCAC...TTTTCTAGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp TCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCACTTTGGCCACATTCTATGTCTaGCATCATGTGAGTGAGGCC +
Preference number: 2 (lower is better)
Translates to: SHLNMEATPVCFSRVVTLATFYV*HHVSEA
Trigger: GGCCTCACTCACATGATGGCAGACATAGAATGTGGC...CAAAGTGACCACTCTAGAGAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGGTGCTGTATTACCAATaGCTGTGGTGGACAAGCCGA +
Preference number: 2 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRVLYYQ*LWWTSR
Trigger: TCGGCTTGTCCACCACAGGCATTGGTAATACAGCAC...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp ACTCAAGATGTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTACACAGCCTTCCCATTaGTTCTCATCCCTCCAGCCT +
Preference number: 2 (lower is better)
Translates to: TQDVSGFLCCNEQRPRDITQPSH*FSSLQP
Trigger: AGGCTGGAGGGATGAGAAGCAATGGGAAGGCTGTGT...AATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAACATCTTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGCTGACAGAGCTGGTGTaGCTCCTGCACAAAATTAGG +
Preference number: 2 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRLTELV*LLHKIR
Trigger: CCTAATTTTGTGCAGGAGGCACACCAGCTCTGTCAG...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGTACAGCAAAGACCCCTaGAAACAGGGACCCAAAGAC +
Preference number: 2 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRYSKDP*KQGPKD
Trigger: GTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTA...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR CCA 90 bp TCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCACTTTGTCTAGACTTAGTATCTaGGTGTGCTGTCCAGGATCC +
Preference number: 2 (lower is better)
Translates to: SHLNMEATPVCFSRVVTLSRLSI*VCCPGS
Trigger: GGATCCTGGACAGCACACCCAGATACTAAGTCTAGA...CAAAGTGACCACTCTAGAGAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR CCA 90 bp TCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTCCACAAGAGGCCATGTaGGAAGAGCTATTCAGTCTC +
Preference number: 2 (lower is better)
Translates to: SRSIEHIKTELCREIMCSPQEAM*EELFSL
Trigger: GAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGG...AGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp GAGACACACACAAAGGCCATGTGCAAACGTGACCATGAACAAACAACTCCAGTGCTTTGTGCACATCAGTaGTTTCTGTATATAAGGAGG +
Preference number: 2 (lower is better)
Translates to: ETHTKAMCKRDHEQTTPVLCAHQ*FLYIRR
Trigger: CCTCCTTATATACAGAAATCACTGATGTGCACAAAG...CACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTGTGTGTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp TCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCACTTTGAGACCAAGGGACATTTaGTCTGCCACATTCTATGTC +
Preference number: 2 (lower is better)
Translates to: SHLNMEATPVCFSRVVTLRPRDI*SATFYV
Trigger: GACATAGAATGTGGCAGATCAAATGTCCCTTGGTCT...CAAAGTGACCACTCTAGAGAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR CCA 90 bp TCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTTCTAGACTTAGTATCTaGGTGTGCTGTCCAGGATCC +
Preference number: 2 (lower is better)
Translates to: SRSIEHIKTELCREIMCSSRLSI*VCCPGS
Trigger: GGATCCTGGACAGCACACCCAGATACTAAGTCTAGA...AGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR CCA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAAAATGCAGACACGCAATaGCTGACAGAGCTGGTGTGC +
Preference number: 2 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQNADTQ*LTELVC
Trigger: GCACACCAGCTCTGTCAGCCATTGCGTGTCTGCATT...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR CCA 90 bp AATTATTTTATTTATGAGTACACTGTTGCTGTCTCCAAACACACCAGAAGAGGGGTGCCCAAGCATCCATaGGCAGAAAGGGTAGAGTCC +
Preference number: 2 (lower is better)
Translates to: NYFIYEYTVAVSKHTRRGVPKHP*AERVES
Trigger: GGACTCTACCCTTTCTGCCCATGGATGCTTGGGCAC...CCCTCTTCTGGTGTGTTTGGAGACAGCAACAGTGTACTCATAAATAAAATAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
3UTR-3UTR TCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGCCAGTGAGAACAGAATaGGGTAATGGCATTGTGCAT +
Preference number: 2 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRPVRTE*GNGIVH
Trigger: ATGCACAATGCCATTACCTCATTCTGTTCTCACTGG...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp ACAATGTCCATTGACTCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGAGAGGTAATGGCATTGTaGATGGATTGTCAAGAGGGT +
Preference number: 2 (lower is better)
Translates to: TMSIDSRSIEHIKTELCREVMAL*MDCQEG
Trigger: ACCCTCTTGACAATCCATGCACAATGCCATTACCTC...TCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGAGTCAATGGACATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGCTTTGTGCACATCAGTaGTTTCTGTATATAAGGAGG +
Preference number: 2 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRLCAHQ*FLYIRR
Trigger: CCTCCTTATATACAGAAATCACTGATGTGCACAAAG...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR TCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGAACAAACAACTCCAGTaGGAACAGAATGAGGTAATG +
Preference number: 2 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRNKQLQ*EQNEVM
Trigger: CATTACCTCATTCTGTTCTCACTGGAGTTGTTTGTT...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR-3UTR GCA 90 bp TCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTAGAAAAAAACAAAGGCACGTGTaGACTTACAGCAAAGACCCC +
Preference number: 2 (lower is better)
Translates to: SIEHIKTELCREIMCSRKKQRHV*TYSKDP
Trigger: GGGGTCTTTGCTGTAAGTGCACACGTGCCTTTGTTT...TTTTCTAGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGA
41% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp TGGCCAAGGGCCACAGTCTCACAGCAGACCCTCATCTaGGGCCGGTGGGAGCACAGGTATCCAGGCTTTGCT +
Preference number: 3 (lower is better)
Translates to: WPRATVSQQTLI*GRWEHRYPGFA
Trigger: AGCAAAGCCTGGATACCTGTGCTCCCACCGGCCTCAGATGAGGGTCTGCTGTGAGACTGTGGCCCTTGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp GGTAATGGCATTGTGCATGGATTGTCAAGAGGGTGGTaGTGGCCAAGGGCCACAGTCTCACAGCAGACCCTC +
Preference number: 3 (lower is better)
Translates to: GNGIVHGLSRGW*WPRATVSQQTL
Trigger: GAGGGTCTGCTGTGAGACTGTGGCCCTTGGCCATCACCACCCTCTTGACAATCCATGCACAATGCCATTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR CCA 72 bp CAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTaGCTCGGCAACCCATCTCATAGCAATGCAGACACG +
Preference number: 3 (lower is better)
Translates to: QRPLQTGTQRQV*LGNPSHSNADT
Trigger: CGTGTCTGCATTGCTATGAGATGGGTTGCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 72 bp AAACAAAGGCACGTGTGCACTTACAGCAAAGACCCCTaGAAACAGGGACCCAAAGACAGGTGTGGCTCGGCA +
Preference number: 3 (lower is better)
Translates to: KQRHVCTYSKDP*KQGPKDRCGSA
Trigger: TGCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTGCACACGTGCCTTTGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 72 bp TGTAGACCAGGCTGGACTCAAACTCAGAAATCTGCCTaGCTCTGCCTCCAGAGTGCTGGGATTAAGGGAATG +
Preference number: 3 (lower is better)
Translates to: CRPGWTQTQKSA*LCLQSAGIKGM
Trigger: CATTCCCTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTGGTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 72 bp CCTGAGACTCCCACCTTTCACACAGAGCCAGAAATGTaGTGTATTACCAATGCCTGTGGTGGACAAGCCGAC +
Preference number: 3 (lower is better)
Translates to: PETPTFHTEPEM*CITNACGGQAD
Trigger: GTCGGCTTGTCCACCACAGGCATTGGTAATACAGCACATTTCTGGCTCTGTGTGAAAGGTGGGAGTCTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 72 bp CCAAGTCTACTTCCTCGCTACCACCCAAAAAGCCAATaGTCGAGACACACACAAAGGCCATGTGCAAACGTG +
Preference number: 3 (lower is better)
Translates to: PSLLPRYHPKSQ*SRHTQRPCANV
Trigger: CACGTTTGCACATGGCCTTTGTGTGTGTCTCGAGCATTGGCTTTTTGGGTGGTAGCGAGGAAGTAGACTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp ACATTTGATCTGCCACATTCTATGTCTGCCATCATGTaGGTGAGGCCAGGGGATAGGACAGACCAGATCCAG +
Preference number: 3 (lower is better)
Translates to: TFDLPHSMSAIM*VRPGDRTDQIQ
Trigger: CTGGATCTGGTCTGTCCTATCCCCTGGCCTCACTCACATGATGGCAGACATAGAATGTGGCAGATCAAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 72 bp CGAACAGCTCAGCTGTCTAGACTTAGTATCTGGGTGTaGTGTCCAGGATCCACAACTAAGCTTGTCTGCAGT +
Preference number: 3 (lower is better)
Translates to: RTAQLSRLSIWV*CPGSTTKLVCS
Trigger: ACTGCAGACAAGCTTAGTTGTGGATCCTGGACAGCACACCCAGATACTAAGTCTAGACAGCTGAGCTGTTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp CCTGGCCATAGCTGTGTCCAGCTTTGTGCACATCAGTaGTTTCTGTATATAAGGAGGGTACCAAGTACCCTC +
Preference number: 3 (lower is better)
Translates to: PGHSCVQLCAHQ*FLYIRRVPSTL
Trigger: GAGGGTACTTGGTACCCTCCTTATATACAGAAATCACTGATGTGCACAAAGCTGGACACAGCTATGGCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp CAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTaGACTCAGAACCTTTGGAAGAGCAGTAAGTGCTCC +
Preference number: 3 (lower is better)
Translates to: QMVVNHHVVAGS*TQNLWKSSKCS
Trigger: GGAGCACTTACTGCTCTTCCAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
3UTR-3UTR CAA 90 bp GAGACACACACAAAGGCCATGTGCAAACGTGACCATGAACAAACAACTCCAGTGAATGAGGTAATGGCATaGTGCATGGATTGTCAAGAG +
Preference number: 3 (lower is better)
Translates to: ETHTKAMCKRDHEQTTPVNEVMA*CMDCQE
Trigger: CTCTTGACAATCCATGCACAATGCCATTACCTCATT...CACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTGTGTGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp CGTGACCATGAACAAACAACTCCAGTGAGAACAGAATaGGGTAATGGCATTGTGCATGGATTGTCAAGAGGG +
Preference number: 3 (lower is better)
Translates to: RDHEQTTPVRTE*GNGIVHGLSRG
Trigger: CCCTCTTGACAATCCATGCACAATGCCATTACCTCATTCTGTTCTCACTGGAGTTGTTTGTTCATGGTCACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR GCA 72 bp AAAAAGCCAATGCTCGAGACACACACAAAGGCCATGTaGAAACGTGACCATGAACAAACAACTCCAGTGAGA +
Preference number: 3 (lower is better)
Translates to: KKPMLETHTKAM*KRDHEQTTPVR
Trigger: TCTCACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTGTGTGTCTCGAGCATTGGCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp CCATGTGCAAACGTGACCATGAACAAACAACTCCAGTaGGAACAGAATGAGGTAATGGCATTGTGCATGGAT +
Preference number: 3 (lower is better)
Translates to: PCANVTMNKQLQ*EQNEVMALCMD
Trigger: ATCCATGCACAATGCCATTACCTCATTCTGTTCTCACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR CCA 72 bp TCTTATGCAAGGCACTTTGGCATTCACATCTTAACATaGAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCA +
Preference number: 3 (lower is better)
Translates to: SYARHFGIHILT*RPLLFVSLEWS
Trigger: TGACCACTCTAGAGAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCATAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR TCA 72 bp TTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTTaGTCTGCCACATTCTATGTCTGCCATCATGTGAGT +
Preference number: 3 (lower is better)
Translates to: FLCCNEQRPRDI*SATFYVCHHVS
Trigger: ACTCACATGATGGCAGACATAGAATGTGGCAGATCAAATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CTCAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAGGGAATGCGCCAGGCTCCCACCCACCTaGGGGGAACCCAGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: LRNLPASASRVLGLRECARLPPT*GEPSWS
Trigger: AGACCAGCTGGGTTCCCCCCAGGTGGGTGGGAGCCT...GGCGCATTCCCTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACAGCAGACCCTCATCTGAGGCCGGTGGGAGCACAGGTATCCAGGCTTTGCTCTGCACATCCATAGCCTaGCCCTGCCCCATCACCTGG +
Preference number: 4 (lower is better)
Translates to: HSRPSSEAGGSTGIQALLCTSIA*PCPITW
Trigger: CCAGGTGATGGGGCAGGGCCAGGCTATGGATGTGCA...GAGCAAAGCCTGGATACCTGTGCTCCCACCGGCCTCAGATGAGGGTCTGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACAGCAGACCCTCATCTGAGGCCGGTGGGAGCACAGGTATCCAGGCTTTGCTCTATGGGCAGAGTCACTaGGTTGTCCCGTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: HSRPSSEAGGSTGIQALLYGQSH*VVPCLL
Trigger: CAGGAGGCACGGGACAACCCAGTGACTCTGCCCATA...GAGCAAAGCCTGGATACCTGTGCTCCCACCGGCCTCAGATGAGGGTCTGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CAGGCTGGACTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGAGGGCAAGTGGCACCATaGGCTGGATGCCCAGATCAC +
Preference number: 4 (lower is better)
Translates to: QAGLKLRNLPASASRVLGGQVAP*AGCPDH
Trigger: GTGATCTGGGCATCCAGCTCATGGTGCCACTTGCCC...TCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CTCAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAGGGAATGCGCCCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTG +
Preference number: 4 (lower is better)
Translates to: LRNLPASASRVLGLRECALLCGP*RAGFLV
Trigger: CACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAG...GGCGCATTCCCTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CACAGCAGACCCTCATCTGAGGCCGGTGGGAGCACAGGTATCCAGGCTTTGCTCTGTTCTTGGTCAGGTTaGGGGTTGGAGGCTCCATCT +
Preference number: 4 (lower is better)
Translates to: HSRPSSEAGGSTGIQALLCSWSG*GLEAPS
Trigger: AGATGGAGCCTCCAACCCTCAACCTGACCAAGAACA...GAGCAAAGCCTGGATACCTGTGCTCCCACCGGCCTCAGATGAGGGTCTGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CTCATCCCCACTCCAACAGGTCAGAGGAATAGGAAGGAAGTTCCCATAGAAGGCCACAGAAGGGCTCCCTaGGGTCTCCAGGCTGGACCC +
Preference number: 4 (lower is better)
Translates to: LIPTPTGQRNRKEVPIEGHRRAP*GLQAGP
Trigger: GGGTCCAGCCTGGAGACCTCAGGGAGCCCTTCTGTG...GCCTTCTATGGGAACTTCCTTCCTATTCCTCTGACCTGTTGGAGTGGGGATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTGGCTCGGCAGGGACTTGAAAAACTaGATGGCTGGCGCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: HLQQRPLQTGTQRQVWLGRDLKN*MAGAWG
Trigger: GCCCCAGGCGCCAGCCATTCAGTTTTTCAAGTCCCT...GCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp AAGAGAAAAGCACAGGTGGGGTATTGCCATGTCAGGGCTGGGAGCAAGGAGGAGCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTG +
Preference number: 4 (lower is better)
Translates to: KRKAQVGYCHVRAGSKEELLCGP*RAGFLV
Trigger: CACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAG...CTCCTCCTTGCTCCCAGCCCTGACATGGCAATACCCCACCTGTGCTTTTCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAAGGCTCCCACCCACCTaGGGGGAACCCAGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: HVWPTRGHVGRAIQSHPKRLPPT*GEPSWS
Trigger: AGACCAGCTGGGTTCCCCCCAGGTGGGTGGGAGCCT...TTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTGGCTCGGCCTGAGGTCTCCAGGCTaGACCCACACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: HLQQRPLQTGTQRQVWLGLRSPG*THTAHP
Trigger: TGGATGTGCAGTGTGGGTCCAGCCTGGAGACCTCAG...GCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAGGCTGGGAGTCCCAGTaGACCTCTGGGCTCCATCTG +
Preference number: 4 (lower is better)
Translates to: HVWPTRGHVGRAIQSHPKGWESQ*TSGLHL
Trigger: CAGATGGAGCCCAGAGGTTCACTGGGACTCCCAGCC...TTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp AAGAGAAAAGCACAGGTGGGGTATTGCCATGTCAGGGCTGGGAGCAAGGAGGAGAGGGACTTGAAAAACTaGATGGCTGGCGCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: KRKAQVGYCHVRAGSKEERDLKN*MAGAWG
Trigger: GCCCCAGGCGCCAGCCATTCAGTTTTTCAAGTCCCT...CTCCTCCTTGCTCCCAGCCCTGACATGGCAATACCCCACCTGTGCTTTTCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp AAGAGAAAAGCACAGGTGGGGTATTGCCATGTCAGGGCTGGGAGCAAGGAGGAGAGGGACCGTTTCTTCTaGCTCTGTCACCCCGTGTCC +
Preference number: 4 (lower is better)
Translates to: KRKAQVGYCHVRAGSKEERDRFF*LCHPVS
Trigger: GGACACGGGGTGACAGAGGCAGAAGAAACGGTCCCT...CTCCTCCTTGCTCCCAGCCCTGACATGGCAATACCCCACCTGTGCTTTTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp GCCCAAGCATCCATGGGCAGAAAGGGTAGAGTCCCAGATCATGTCTCCACCCATGTGTCTGGCTCCAGCTaGGAGAGGTCCATGCTATGG +
Preference number: 4 (lower is better)
Translates to: AQASMGRKGRVPDHVSTHVSGSS*ERSMLW
Trigger: CCATAGCATGGACCTCTCCCAGCTGGAGCCAGACAC...ATGGGTGGAGACATGATCTGGGACTCTACCCTTTCTGCCCATGGATGCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp AAGAGAAAAGCACAGGTGGGGTATTGCCATGTCAGGGCTGGGAGCAAGGAGGAGGGAACCCAGCTGGTCTaGGAGATCAGGCAGAGAGTG +
Preference number: 4 (lower is better)
Translates to: KRKAQVGYCHVRAGSKEEGTQLV*EIRQRV
Trigger: CACTCTCTGCCTGATCTCCCAGACCAGCTGGGTTCC...CTCCTCCTTGCTCCCAGCCCTGACATGGCAATACCCCACCTGTGCTTTTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp AAGAGAAAAGCACAGGTGGGGTATTGCCATGTCAGGGCTGGGAGCAAGGAGGAGGGCCCCCAGAGCTTATaGGCAGAGTCACTGGGTTGT +
Preference number: 4 (lower is better)
Translates to: KRKAQVGYCHVRAGSKEEGPQSL*AESLGC
Trigger: ACAACCCAGTGACTCTGCCCATAAGCTCTGGGGGCC...CTCCTCCTTGCTCCCAGCCCTGACATGGCAATACCCCACCTGTGCTTTTCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CAGGCTGGACTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGAGATAGAGGGTCATGTTaGTTAGCCCCTGGGCATCCT +
Preference number: 4 (lower is better)
Translates to: QAGLKLRNLPASASRVLGDRGSC*LAPGHP
Trigger: AGGATGCCCAGGGGCTAATCAACATGACCCTCTATC...TCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp GCACAGGTATCCAGGCTTTGCTCTGGAGGGAGAACTAACGAACAGCTCAGCTGTAGGGACCGTTTCTTCTaGCTCTGTCACCCCGTGTCC +
Preference number: 4 (lower is better)
Translates to: AQVSRLCSGGRTNEQLSCRDRFF*LCHPVS
Trigger: GGACACGGGGTGACAGAGGCAGAAGAAACGGTCCCT...ACAGCTGAGCTGTTCGTTAGTTCTCCCTCCAGAGCAAAGCCTGGATACCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp CTCAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAGGGAATGCGCCTATGACTCCCCCTGTTaGTCAGCAAGAAGCCTGCTC +
Preference number: 4 (lower is better)
Translates to: LRNLPASASRVLGLRECAYDSPC*SARSLL
Trigger: GAGCAGGCTTCTTGCTGAGCAACAGGGGGAGTCATA...GGCGCATTCCCTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAATGCACATCCATAGCCTaGCCCTGCCCCATCACCTGG +
Preference number: 4 (lower is better)
Translates to: HVWPTRGHVGRAIQSHPKCTSIA*PCPITW
Trigger: CCAGGTGATGGGGCAGGGCCAGGCTATGGATGTGCA...TTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTGGCTCGGCCATGCTCAGCTCAACTaGAGGGTTCTCCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: HLQQRPLQTGTQRQVWLGHAQLN*RVLLWL
Trigger: GAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCATG...GCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAAGGGGACTTGGCAGCCTaGCTCACACTTGGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: TCGPQEAMWEELFSLIQKGDLAA*LTLGGS
Trigger: GCTGCCTCCAAGTGTGAGCCAGGCTGCCAAGTCCCC...TTTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAACAGGAGGAGCAGGATaGCCTGGAGGGGACTTGGCA +
Preference number: 4 (lower is better)
Translates to: HVWPTRGHVGRAIQSHPKTGGAG*PGGDLA
Trigger: TGCCAAGTCCCCTCCAGGCCATCCTGCTCCTCCTGT...TTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp GCCCAAGCATCCATGGGCAGAAAGGGTAGAGTCCCAGATCATGTCTCCACCCATTGTTCTTGGTCAGGTTaGGGGTTGGAGGCTCCATCT +
Preference number: 4 (lower is better)
Translates to: AQASMGRKGRVPDHVSTHCSWSG*GLEAPS
Trigger: AGATGGAGCCTCCAACCCTCAACCTGACCAAGAACA...ATGGGTGGAGACATGATCTGGGACTCTACCCTTTCTGCCCATGGATGCTTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp TGCAAGGCACTTTGGCATTCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCAGCGGGTGTAGACACTaGCCCCCGGCGGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: CKALWHSHLNMEATPVCFSGCRH*PPAAPS
Trigger: TGAAGGAGCCGCCGGGGGCCAGTGTCTACACCCGCT...GAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACTACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTAGCGGGTGTAGACACTaGCCCCCGGCGGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: TTDGCEPPCSCWELNSEPSGCRH*PPAAPS
Trigger: TGAAGGAGCCGCCGGGGGCCAGTGTCTACACCCGCT...AGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp CACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAACTGAGGTCTCCAGGCTaGACCCACACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: HVWPTRGHVGRAIQSHPKLRSPG*THTAHP
Trigger: TGGATGTGCAGTGTGGGTCCAGCCTGGAGACCTCAG...TTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TCACTTTGTAGACCAGGCTGGACTCAAACTCAGAAATCTGCCTGCCTCTGCCTCTATGGGCAGAGTCACTaGGTTGTCCCGTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: SLCRPGWTQTQKSACLCLYGQSH*VVPCLL
Trigger: CAGGAGGCACGGGACAACCCAGTGACTCTGCCCATA...GAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTGGTCTACAAAGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp TCACTTTGTAGACCAGGCTGGACTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCGCCCAGCTGCAGATaGTGTGGTTGGTGTAGTCAT +
Preference number: 4 (lower is better)
Translates to: SLCRPGWTQTQKSACLCLPPSCR*CGWCSH
Trigger: ATGACTACACCAACCACATCATCTGCAGCTGGGCGG...GAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTGGTCTACAAAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp CTCATCCCCACTCCAACAGGTCAGAGGAATAGGAAGGAAGTTCCCATAGAAGGCCTAGGTTCTCTGTCTTaGTGTCCTCCCAGCTGTCCG +
Preference number: 4 (lower is better)
Translates to: LIPTPTGQRNRKEVPIEGLGSLS*CPPSCP
Trigger: CGGACAGCTGGGAGGACAGCAAGACAGAGAACCTAG...GCCTTCTATGGGAACTTCCTTCCTATTCCTCTGACCTGTTGGAGTGGGGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp ACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTTTGTGGCGAAGGCTGCCATaGTGCCAGGAGGCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCSCWELNSEPLWRRLP*CQEARD
Trigger: GTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCCA...CAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR GCA 90 bp CTCATCCCCACTCCAACAGGTCAGAGGAATAGGAAGGAAGTTCCCATAGAAGGCCCTCCTGTTCCTCCATaGTCAGCTCAACTGGAGGGT +
Preference number: 4 (lower is better)
Translates to: LIPTPTGQRNRKEVPIEGPPVPP*SAQLEG
Trigger: ACCCTCCAGTTGAGCTGAGCATGGAGGAACAGGAGG...GCCTTCTATGGGAACTTCCTTCCTATTCCTCTGACCTGTTGGAGTGGGGATGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAAGGTGGCTGCACATTCTaGGCAAGTGGCACCATGAGC +
Preference number: 4 (lower is better)
Translates to: TCGPQEAMWEELFSLIQKGGCTF*ASGTMS
Trigger: GCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACC...TTTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTGGCTCGGCTTGACAGACAAGTCCTaGACTAGGTCCTCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: HLQQRPLQTGTQRQVWLGLTDKS*TRSSVS
Trigger: TGAGACTGAGGACCTAGTCCAGGACTTGTCTGTCAA...GCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAACACACCTTCCCAGACTaGCTATTGTCCCAAGGGGGC +
Preference number: 4 (lower is better)
Translates to: TCGPQEAMWEELFSLIQKHTFPD*LLSQGG
Trigger: GCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTG...TTTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp TCACTTTGTAGACCAGGCTGGACTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCATCAAAGAAGCATTaGAGGTTCTGTGGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: SLCRPGWTQTQKSACLCLPSKKH*RFCGWA
Trigger: GGCCCAGCCACAGAACCTTCAATGCTTCTTTGATGG...GAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTGGTCTACAAAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTGGCTCGGCCTCTATAGTGAGAGGTaGCACGTTGTTGTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: HLQQRPLQTGTQRQVWLGLYSER*HVVVFQ
Trigger: TTGGAAGACAACAACGTGTCACCTCTCACTATAGAG...GCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGCACAGAAGGGCTCCCTaGGGTCTCCAGGCTGGACCC +
Preference number: 4 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRHRRAP*GLQAGP
Trigger: GGGTCCAGCCTGGAGACCTCAGGGAGCCCTTCTGTG...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CTCATCCCCACTCCAACAGGTCAGAGGAATAGGAAGGAAGTTCCCATAGAAGGCCCGGATCTCCAGGAGTaGCATAATCAGAGGCCATCA +
Preference number: 4 (lower is better)
Translates to: LIPTPTGQRNRKEVPIEGPDLQE*HNQRPS
Trigger: TGATGGCCTCTGATTATGTCACTCCTGGAGATCCGG...GCCTTCTATGGGAACTTCCTTCCTATTCCTCTGACCTGTTGGAGTGGGGATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp CACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAGTTCTTGGGAAGTGGTaGCTGCACATTCTGGGCAAG +
Preference number: 4 (lower is better)
Translates to: HVWPTRGHVGRAIQSHPKVLGKW*LHILGK
Trigger: CTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAAC...TTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGAGCGGGTGTAGACACTaGCCCCCGGCGGCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRSGCRH*PPAAPS
Trigger: TGAAGGAGCCGCCGGGGGCCAGTGTCTACACCCGCT...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTTTGCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTG +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCSCWELNSEPLLLCGP*RAGFLV
Trigger: CACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAG...CAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR TCA 90 bp ACAATGTCCATTGACTCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGAGGCTGGGAGTCCCAGTaGACCTCTGGGCTCCATCTG +
Preference number: 4 (lower is better)
Translates to: TMSIDSRSIEHIKTELCRGWESQ*TSGLHL
Trigger: CAGATGGAGCCCAGAGGTTCACTGGGACTCCCAGCC...TCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGAGTCAATGGACATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CACTTACAGCAAAGACCCCTGCAAACAGGGACCCAAAGACAGGTGTGGCTCGGCGATAGGGAAACTTTTTaGCAGACAAGTCCTGGACTA +
Preference number: 4 (lower is better)
Translates to: HLQQRPLQTGTQRQVWLGDRETF*QTSPGL
Trigger: TAGTCCAGGACTTGTCTGTCAAAAAGTTTCCCTATC...GCCGAGCCACACCTGTCTTTGGGTCCCTGTTTGCAGGGGTCTTTGCTGTAAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp GCACAGGTATCCAGGCTTTGCTCTGGAGGGAGAACTAACGAACAGCTCAGCTGTGATGCTTTAGGGACTTaGAAAACTGAATGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: AQVSRLCSGGRTNEQLSCDALGT*KTEWLA
Trigger: CGCCAGCCATTCAGTTTTTCAAGTCCCTAAAGCATC...ACAGCTGAGCTGTTCGTTAGTTCTCCCTCCAGAGCAAAGCCTGGATACCTGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp TGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTTTGGAAGAGCAGAAAGGCCACGGTCCATaGTCTTCTCCTCTTGGTCCC +
Preference number: 4 (lower is better)
Translates to: CEPPCSCWELNSEPLEEQKGHGP*SSPLGP
Trigger: GGGACCAAGAGGAGAAGATCATGGACCGTGGCCTTT...CTGCTCTTCCAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR GCA 90 bp ACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAACAGGCACAGGTAGACTaGAATGGTAGCGGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: TCGPQEAMWEELFSLIQKQAQVD*NGSGCR
Trigger: TCTACACCCGCTACCATTGCAGTCTACCTGTGCCTG...TTTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp ACTCCAAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATATGGCGAAGGCTGCCATaGTGCCAGGAGGCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: TPSLSLKALDTEGTRKNIWRRLP*CQEARD
Trigger: GTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCCA...TATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTTGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TGCAAGGCACTTTGGCATTCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCGGTGGCTGCACATTCTaGGCAAGTGGCACCATGAGC +
Preference number: 4 (lower is better)
Translates to: CKALWHSHLNMEATPVCFGGCTF*ASGTMS
Trigger: GCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACC...GAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTTTGGGTGGCTGCACATTCTaGGCAAGTGGCACCATGAGC +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCSCWELNSEPLGGCTF*ASGTMS
Trigger: GCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACC...CAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp TCACTTTGTAGACCAGGCTGGACTCAAACTCAGAAATCTGCCTGCCTCTGCCTCGAGCAGTGGAGGGACTaGATCCCATCAAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: SLCRPGWTQTQKSACLCLEQWRD*IPSKKH
Trigger: ATGCTTCTTTGATGGGATCCAGTCCCTCCACTGCTC...GAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTGGTCTACAAAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACTACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTCCGCCCAGCTGCAGATaGTGTGGTTGGTGTAGTCAT +
Preference number: 4 (lower is better)
Translates to: TTDGCEPPCSCWELNSEPPPSCR*CGWCSH
Trigger: ATGACTACACCAACCACATCATCTGCAGCTGGGCGG...AGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR TCA 90 bp CTCAGAAATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAAGGGAATGCGCCAGTAGTCTTCGTTTGTaGTGGAAAATCGTGTATAGG +
Preference number: 4 (lower is better)
Translates to: LRNLPASASRVLGLRECASSLRL*WKIVYR
Trigger: CCTATACACGATTTTCCATCACAAACGAAGACTACT...GGCGCATTCCCTTAATCCCAGCACTCTGGAGGCAGAGGCAGGCAGATTTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp GAGACACACACAAAGGCCATGTGCAAACGTGACCATGAACAAACAACTCCAGTGCCATCAAAGAAGCATTaGAGGTTCTGTGGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: ETHTKAMCKRDHEQTTPVPSKKH*RFCGWA
Trigger: GGCCCAGCCACAGAACCTTCAATGCTTCTTTGATGG...CACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTGTGTGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp AAGAGAAAAGCACAGGTGGGGTATTGCCATGTCAGGGCTGGGAGCAAGGAGGAGGGAATGTGTGCTCAATaGATGAGTAAGCCATCTTCT +
Preference number: 4 (lower is better)
Translates to: KRKAQVGYCHVRAGSKEEGMCAQ*MSKPSS
Trigger: AGAAGATGGCTTACTCATTCATTGAGCACACATTCC...CTCCTCCTTGCTCCCAGCCCTGACATGGCAATACCCCACCTGTGCTTTTCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGTGGCTTACTGTGTGGTaGGAGGGAGCCAGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRWLTVW*EGARSQ
Trigger: CTGGGACCTGGCTCCCTCTCACCACACAGTAAGCCA...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACTCCAAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATATGGCTTACTGTGTGGTaGGAGGGAGCCAGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: TPSLSLKALDTEGTRKNIWLTVW*EGARSQ
Trigger: CTGGGACCTGGCTCCCTCTCACCACACAGTAAGCCA...TATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTTGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp CTCATCCCCACTCCAACAGGTCAGAGGAATAGGAAGGAAGTTCCCATAGAAGGCGATGCTTTAGGGACTTaGAAAACTGAATGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: LIPTPTGQRNRKEVPIEGDALGT*KTEWLA
Trigger: CGCCAGCCATTCAGTTTTTCAAGTCCCTAAAGCATC...GCCTTCTATGGGAACTTCCTTCCTATTCCTCTGACCTGTTGGAGTGGGGATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp ACTACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTCTAGGTTCTCTGTCTTaGTGTCCTCCCAGCTGTCCG +
Preference number: 4 (lower is better)
Translates to: TTDGCEPPCSCWELNSEPLGSLS*CPPSCP
Trigger: CGGACAGCTGGGAGGACAGCAAGACAGAGAACCTAG...AGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp TGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTTTGGAAGAGCAGGTTCTTGGGAAGTGGTaGCTGCACATTCTGGGCAAG +
Preference number: 4 (lower is better)
Translates to: CEPPCSCWELNSEPLEEQVLGKW*LHILGK
Trigger: CTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAAC...CTGCTCTTCCAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp TCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCACTTTGGTGTCTGGCTCCAGCTaGGAGAGGTCCATGCTATGG +
Preference number: 4 (lower is better)
Translates to: SHLNMEATPVCFSRVVTLVSGSS*ERSMLW
Trigger: CCATAGCATGGACCTCTCCCAGCTGGAGCCAGACAC...CAAAGTGACCACTCTAGAGAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACAATGTCCATTGACTCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGAAGATCAGGCAGAGAGTaGGATTGGGGAGGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: TMSIDSRSIEHIKTELCRRSGRE*DWGGPR
Trigger: CCTGGGGCCTCCCCAATCCCACTCTCTGCCTGATCT...TCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGAGTCAATGGACATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACTACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTGATAGAGGGTCATGTTaGTTAGCCCCTGGGCATCCT +
Preference number: 4 (lower is better)
Translates to: TTDGCEPPCSCWELNSEPDRGSC*LAPGHP
Trigger: AGGATGCCCAGGGGCTAATCAACATGACCCTCTATC...AGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR TCA 90 bp GCCCAAGCATCCATGGGCAGAAAGGGTAGAGTCCCAGATCATGTCTCCACCCATAGTAGTCTTCGTTTGTaGTGGAAAATCGTGTATAGG +
Preference number: 4 (lower is better)
Translates to: AQASMGRKGRVPDHVSTHSSLRL*WKIVYR
Trigger: CCTATACACGATTTTCCATCACAAACGAAGACTACT...ATGGGTGGAGACATGATCTGGGACTCTACCCTTTCTGCCCATGGATGCTTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR TCA 90 bp ACTCAAGATGTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTGGGCAAGTGGCACCATaGGCTGGATGCCCAGATCAC +
Preference number: 4 (lower is better)
Translates to: TQDVSGFLCCNEQRPRDIGQVAP*AGCPDH
Trigger: GTGATCTGGGCATCCAGCTCATGGTGCCACTTGCCC...AATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAACATCTTGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTTTGCCATCAAAGAAGCATTaGAGGTTCTGTGGCTGGGCC +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCSCWELNSEPLPSKKH*RFCGWA
Trigger: GGCCCAGCCACAGAACCTTCAATGCTTCTTTGATGG...CAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR GCA 90 bp ACTACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTCAGGCACAGGTAGACTaGAATGGTAGCGGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: TTDGCEPPCSCWELNSEPQAQVD*NGSGCR
Trigger: TCTACACCCGCTACCATTGCAGTCTACCTGTGCCTG...AGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp GAGACACACACAAAGGCCATGTGCAAACGTGACCATGAACAAACAACTCCAGTGGAGCAGTGGAGGGACTaGATCCCATCAAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: ETHTKAMCKRDHEQTTPVEQWRD*IPSKKH
Trigger: ATGCTTCTTTGATGGGATCCAGTCCCTCCACTGCTC...CACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTGTGTGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGCACACCTTCCCAGACTaGCTATTGTCCCAAGGGGGC +
Preference number: 4 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRHTFPD*LLSQGG
Trigger: GCCCCCTTGGGACAATAGCCAGTCTGGGAAGGTGTG...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR CAA 72 bp GTATCTGGGTGTGCTGTCCAGGATCCACAACTAAGCTaGTCTGCAGTTGAGACCATGAGTTCTAGACACACA +
Preference number: 4 (lower is better)
Translates to: VSGCAVQDPQLS*SAVETMSSRHT
Trigger: TGTGTGTCTAGAACTCATGGTCTCAACTGCAGACAAGCTTAGTTGTGGATCCTGGACAGCACACCCAGATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp AATTATTTTATTTATGAGTACACTGTTGCTGTCTCCAAACACACCAGAAGAGGGGGCTGGGAGTCCCAGTaGACCTCTGGGCTCCATCTG +
Preference number: 4 (lower is better)
Translates to: NYFIYEYTVAVSKHTRRGGWESQ*TSGLHL
Trigger: CAGATGGAGCCCAGAGGTTCACTGGGACTCCCAGCC...CCCTCTTCTGGTGTGTTTGGAGACAGCAACAGTGTACTCATAAATAAAATAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAAAGATCAGGCAGAGAGTaGGATTGGGGAGGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQRSGRE*DWGGPR
Trigger: CCTGGGGCCTCCCCAATCCCACTCTCTGCCTGATCT...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTAGAAAAGGGGACTTGGCAGCCTaGCTCACACTTGGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: SIEHIKTELCREIMCSRKGDLAA*LTLGGS
Trigger: GCTGCCTCCAAGTGTGAGCCAGGCTGCCAAGTCCCC...TTTTCTAGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp ACTCCAAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATACTGGCGCCTGGGGCATaGGCTGATAGGGAAACTTTT +
Preference number: 4 (lower is better)
Translates to: TPSLSLKALDTEGTRKNILAPGA*ADRETF
Trigger: AAAAGTTTCCCTATCAGCCCATGCCCCAGGCGCCAG...TATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTTGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGCTGGCGCCTGGGGCATaGGCTGATAGGGAAACTTTT +
Preference number: 4 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRLAPGA*ADRETF
Trigger: AAAAGTTTCCCTATCAGCCCATGCCCCAGGCGCCAG...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp AATTATTTTATTTATGAGTACACTGTTGCTGTCTCCAAACACACCAGAAGAGGGGGGCAAGTGGCACCATaGGCTGGATGCCCAGATCAC +
Preference number: 4 (lower is better)
Translates to: NYFIYEYTVAVSKHTRRGGQVAP*AGCPDH
Trigger: GTGATCTGGGCATCCAGCTCATGGTGCCACTTGCCC...CCCTCTTCTGGTGTGTTTGGAGACAGCAACAGTGTACTCATAAATAAAATAATT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR GCA 90 bp ACTCAAGATGTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTCTAGGTTCTCTGTCTTaGTGTCCTCCCAGCTGTCCG +
Preference number: 4 (lower is better)
Translates to: TQDVSGFLCCNEQRPRDILGSLS*CPPSCP
Trigger: CGGACAGCTGGGAGGACAGCAAGACAGAGAACCTAG...AATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAACATCTTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp ACAATGTCCATTGACTCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGATATGACTCCCCCTGTTaGTCAGCAAGAAGCCTGCTC +
Preference number: 4 (lower is better)
Translates to: TMSIDSRSIEHIKTELCRYDSPC*SARSLL
Trigger: GAGCAGGCTTCTTGCTGAGCAACAGGGGGAGTCATA...TCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGAGTCAATGGACATTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTAGAAAAACAGGAGGAGCAGGATaGCCTGGAGGGGACTTGGCA +
Preference number: 4 (lower is better)
Translates to: SIEHIKTELCREIMCSRKTGGAG*PGGDLA
Trigger: TGCCAAGTCCCCTCCAGGCCATCCTGCTCCTCCTGT...TTTTCTAGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TGCAAGGCACTTTGGCATTCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCTTGACAGACAAGTCCTaGACTAGGTCCTCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: CKALWHSHLNMEATPVCFLTDKS*TRSSVS
Trigger: TGAGACTGAGGACCTAGTCCAGGACTTGTCTGTCAA...GAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAACCGCCCAGCTGCAGATaGTGTGGTTGGTGTAGTCAT +
Preference number: 4 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQPPSCR*CGWCSH
Trigger: ATGACTACACCAACCACATCATCTGCAGCTGGGCGG...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACTCAAGATGTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTTGTTCTTGGTCAGGTTaGGGGTTGGAGGCTCCATCT +
Preference number: 4 (lower is better)
Translates to: TQDVSGFLCCNEQRPRDICSWSG*GLEAPS
Trigger: AGATGGAGCCTCCAACCCTCAACCTGACCAAGAACA...AATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAACATCTTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACAATGTCCATTGACTCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGACCAGGTAGGGCCCATTaGAGTCAAAGCTGGGTAATT +
Preference number: 4 (lower is better)
Translates to: TMSIDSRSIEHIKTELCRPGRAH*SQSWVI
Trigger: AATTACCCAGCTTTGACTTCAATGGGCCCTACCTGG...TCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGAGTCAATGGACATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACTCAAGATGTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTCCGGATCTCCAGGAGTaGCATAATCAGAGGCCATCA +
Preference number: 4 (lower is better)
Translates to: TQDVSGFLCCNEQRPRDIPDLQE*HNQRPS
Trigger: TGATGGCCTCTGATTATGTCACTCCTGGAGATCCGG...AATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAACATCTTGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp AATTATTTTATTTATGAGTACACTGTTGCTGTCTCCAAACACACCAGAAGAGGGAGGGACCGTTTCTTCTaGCTCTGTCACCCCGTGTCC +
Preference number: 4 (lower is better)
Translates to: NYFIYEYTVAVSKHTRRGRDRFF*LCHPVS
Trigger: GGACACGGGGTGACAGAGGCAGAAGAAACGGTCCCT...CCCTCTTCTGGTGTGTTTGGAGACAGCAACAGTGTACTCATAAATAAAATAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR GCA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAACCTCCTGTTCCTCCATaGTCAGCTCAACTGGAGGGT +
Preference number: 4 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQPPVPP*SAQLEG
Trigger: ACCCTCCAGTTGAGCTGAGCATGGAGGAACAGGAGG...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTAGAAAAGTGTCTGGCTCCAGCTaGGAGAGGTCCATGCTATGG +
Preference number: 4 (lower is better)
Translates to: SIEHIKTELCREIMCSRKVSGSS*ERSMLW
Trigger: CCATAGCATGGACCTCTCCCAGCTGGAGCCAGACAC...TTTTCTAGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTAGAAAAGGAACCCAGCTGGTCTaGGAGATCAGGCAGAGAGTG +
Preference number: 4 (lower is better)
Translates to: SIEHIKTELCREIMCSRKGTQLV*EIRQRV
Trigger: CACTCTCTGCCTGATCTCCCAGACCAGCTGGGTTCC...TTTTCTAGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp TCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTAGAAAAGGCCCCCAGAGCTTATaGGCAGAGTCACTGGGTTGT +
Preference number: 4 (lower is better)
Translates to: SIEHIKTELCREIMCSRKGPQSL*AESLGC
Trigger: ACAACCCAGTGACTCTGCCCATAAGCTCTGGGGGCC...TTTTCTAGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
3UTR CAA 72 bp GAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCACTTaGGAAAGTATTGACAGGCTGATGTTGAACATTGCC +
Preference number: 4 (lower is better)
Translates to: EATPVCFSRVVT*ESIDRLMLNIA
Trigger: GGCAATGTTCAACATCAGCCTGTCAATACTTTCCAAAGTGACCACTCTAGAGAAACAAACAGGAGTGGCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp GAGACACACACAAAGGCCATGTGCAAACGTGACCATGAACAAACAACTCCAGTGAGTAGTCTTCGTTTGTaGTGGAAAATCGTGTATAGG +
Preference number: 4 (lower is better)
Translates to: ETHTKAMCKRDHEQTTPVSSLRL*WKIVYR
Trigger: CCTATACACGATTTTCCATCACAAACGAAGACTACT...CACTGGAGTTGTTTGTTCATGGTCACGTTTGCACATGGCCTTTGTGTGTGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp TGCAAGGCACTTTGGCATTCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCGGAATGTGTGCTCAATaGATGAGTAAGCCATCTTCT +
Preference number: 4 (lower is better)
Translates to: CKALWHSHLNMEATPVCFGMCAQ*MSKPSS
Trigger: AGAAGATGGCTTACTCATTCATTGAGCACACATTCC...GAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACAGATGGTTGTGAACCACCATGTAGTTGCTGGGAGTTGAACTCAGAACCTTTGGGAATGTGTGCTCAATaGATGAGTAAGCCATCTTCT +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCSCWELNSEPLGMCAQ*MSKPSS
Trigger: AGAAGATGGCTTACTCATTCATTGAGCACACATTCC...CAAAGGTTCTGAGTTCAACTCCCAGCAACTACATGGTGGTTCACAACCATCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR TCA 90 bp ACTCAAGATGTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTCCAGGTAGGGCCCATTaGAGTCAAAGCTGGGTAATT +
Preference number: 4 (lower is better)
Translates to: TQDVSGFLCCNEQRPRDIPGRAH*SQSWVI
Trigger: AATTACCCAGCTTTGACTTCAATGGGCCCTACCTGG...AATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAACATCTTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR GCA 90 bp AATTATTTTATTTATGAGTACACTGTTGCTGTCTCCAAACACACCAGAAGAGGGCTCTTGGTCCCCTGTTaGTCAGCAAGAAGCCTGCTC +
Preference number: 4 (lower is better)
Translates to: NYFIYEYTVAVSKHTRRGLLVPC*SARSLL
Trigger: GAGCAGGCTTCTTGCTGAGCAACAGGGGACCAAGAG...CCCTCTTCTGGTGTGTTTGGAGACAGCAACAGTGTACTCATAAATAAAATAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CCA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAACATGCTCAGCTCAACTaGAGGGTTCTCCTTTGGCTC +
Preference number: 4 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQHAQLN*RVLLWL
Trigger: GAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCATG...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR TCA 90 bp ACTCCAAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATACTCTATAGTGAGAGGTaGCACGTTGTTGTCTTCCAA +
Preference number: 4 (lower is better)
Translates to: TPSLSLKALDTEGTRKNILYSER*HVVVFQ
Trigger: TTGGAAGACAACAACGTGTCACCTCTCACTATAGAG...TATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTTGGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CCA 90 bp AATTATTTTATTTATGAGTACACTGTTGCTGTCTCCAAACACACCAGAAGAGGGGAGCAGTGGAGGGACTaGATCCCATCAAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: NYFIYEYTVAVSKHTRRGEQWRD*IPSKKH
Trigger: ATGCTTCTTTGATGGGATCCAGTCCCTCCACTGCTC...CCCTCTTCTGGTGTGTTTGGAGACAGCAACAGTGTACTCATAAATAAAATAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS CCA 90 bp TTCGGGATGTGGGGATGCTGGGCCCACTTCCTCCCTGGGCTCTCCTaGGATCACTGTGGGGCTGCTTGCCACAGGAGGAGCAGGATGGCC +
Preference number: 5 (lower is better)
Translates to: FGMWGCWAHFLPGLS*DHCGAACHRRSRMA
Trigger: GGCCATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGATCCCAGGAGAGCCCAGGGAGGAAGTGGGCCCAGCATCCCCACATCCCGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS GCA 90 bp CCTTGTCCCCTGGCTGGGAGTCCCAGTGAACCTCTGGGCTCCATCTaGTGGGTCTCCCAGACAAGCTTGAACCCGGGGACAGCCGAGTGC +
Preference number: 5 (lower is better)
Translates to: PCPLAGSPSEPLGSI*WVSQTSLNPGTAEC
Trigger: GCACTCGGCTGTCCCCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGGTTCACTGGGACTCCCAGCCAGGGGACAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 90 bp TGGGATCACTGTGGGGCTGCTTGCCACAGGAGGAGCAGGATGGCCTaGAGGGGACTTGGCAGCCTGGCTCACACTTGGAGGCAGCTCCAC +
Preference number: 5 (lower is better)
Translates to: WDHCGAACHRRSRMA*RGLGSLAHTWRQLH
Trigger: GTGGAGCTGCCTCCAAGTGTGAGCCAGGCTGCCAAGTCCCCTCCAGGCCATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGATCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS GCA 90 bp GGCTCCACAGAAGGGCTCCCTGAGGTCTCCAGGCTGGACCCACACTaGACATCCATAGCCTGGCCCTGCCCCATCACCTGGGACAATGGA +
Preference number: 5 (lower is better)
Translates to: GSTEGLPEVSRLDPH*TSIAWPCPITWDNG
Trigger: TCCATTGTCCCAGGTGATGGGGCAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCTCAGGGAGCCCTTCTGTGGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CCA 90 bp TACTCCAAGGAGCCTGGCAGTGCTGGCTTCAGGCTCCCACCCACCTaGGGGGAACCCAGCTGGTCTGGGAGATCAGGCAGAGAGTGGGAT +
Preference number: 5 (lower is better)
Translates to: YSKEPGSAGFRLPPT*GEPSWSGRSGREWD
Trigger: ATCCCACTCTCTGCCTGATCTCCCAGACCAGCTGGGTTCCCCCCAGGTGGGTGGGAGCCTGAAGCCAGCACTGCCAGGCTCCTTGGAGTA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 90 bp CCAGTGAACCTCTGGGCTCCATCTGCTGGGTCTCCCAGACAAGCTTaGACCCGGGGACAGCCGAGTGCGCACACGGGCAGCATAGATGCT +
Preference number: 5 (lower is better)
Translates to: PVNLWAPSAGSPRQA*TRGQPSAHTGSIDA
Trigger: AGCATCTATGCTGCCCGTGTGCGCACTCGGCTGTCCCCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGGTTCACTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 90 bp CCTGCTCTGTGGCCCCTGGAGAGCGGGGTTCTTAGTGGCGAAGGCTaGCATGCTGCCAGGAGGCCAGAGACCTTTACCTCCATCCTGGAA +
Preference number: 5 (lower is better)
Translates to: PALWPLESGVLSGEG*HAARRPETFTSILE
Trigger: TTCCAGGATGGAGGTAAAGGTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCCACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 90 bp AGACTGTGTACTGGCTGTGTGCACTGGGCTCAGGCACAGGTAGACTaGAATGGTAGCGGGTGTAGACACTGGCCCCCGGCGGCTCCTTCA +
Preference number: 5 (lower is better)
Translates to: RLCTGCVHWAQAQVD*NGSGCRHWPPAAPS
Trigger: TGAAGGAGCCGCCGGGGGCCAGTGTCTACACCCGCTACCATTGCAGTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGTACACAGTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS TCA 90 bp CCCATCGTAGTTAGAGATGGGCTTGACCCTCACCCTGGCGCAGTATaGGGTGTCTGGCTCCAGCTGGGAGAGGTCCATGCTATGGGCTCG +
Preference number: 5 (lower is better)
Translates to: PIVVRDGLDPHPGAV*GVWLQLGEVHAMGS
Trigger: CGAGCCCATAGCATGGACCTCTCCCAGCTGGAGCCAGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCCCATCTCTAACTACGATGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 90 bp CCCTGGCGCAGTATGAGGTGTCTGGCTCCAGCTGGGAGAGGTCCATaGTATGGGCTCGATCTAGGTTCTCTGTCTTGCTGTCCTCCCAGC +
Preference number: 5 (lower is better)
Translates to: PWRSMRCLAPAGRGP*YGLDLGSLSCCPPS
Trigger: GCTGGGAGGACAGCAAGACAGAGAACCTAGATCGAGCCCATAGCATGGACCTCTCCCAGCTGGAGCCAGACACCTCATACTGCGCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 90 bp GCGCAGTATGAGGTGTCTGGCTCCAGCTGGGAGAGGTCCATGCTATaGGCTCGATCTAGGTTCTCTGTCTTGCTGTCCTCCCAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: AQYEVSGSSWERSML*ARSRFSVLLSSQLS
Trigger: GGACAGCTGGGAGGACAGCAAGACAGAGAACCTAGATCGAGCCCATAGCATGGACCTCTCCCAGCTGGAGCCAGACACCTCATACTGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 90 bp GGCTTGACCCTCACCCTGGCGCAGTATGAGGTGTCTGGCTCCAGCTaGGAGAGGTCCATGCTATGGGCTCGATCTAGGTTCTCTGTCTTG +
Preference number: 5 (lower is better)
Translates to: GLTLTLAQYEVSGSS*ERSMLWARSRFSVL
Trigger: CAAGACAGAGAACCTAGATCGAGCCCATAGCATGGACCTCTCCCAGCTGGAGCCAGACACCTCATACTGCGCCAGGGTGAGGGTCAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 90 bp ACACTGCACATCCATAGCCTGGCCCTGCCCCATCACCTGGGACAATaGAACCAGTTGCGCTTGACCTCCAGGGGGCAGACACATGTACTC +
Preference number: 5 (lower is better)
Translates to: TLHIHSLALPHHLGQ*NQLRLTSRGQTHVL
Trigger: GAGTACATGTGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCATTGTCCCAGGTGATGGGGCAGGGCCAGGCTATGGATGTGCAGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CCA 90 bp CATAATCAGAGGCCATCATACTGCCCTCAGGGCCCCCAGAGCTTATaGGCAGAGTCACTGGGTTGTCCCGTGCCTCCTGTTCCTCCATGC +
Preference number: 5 (lower is better)
Translates to: HNQRPSYCPQGPQSL*AESLGCPVPPVPPC
Trigger: GCATGGAGGAACAGGAGGCACGGGACAACCCAGTGACTCTGCCCATAAGCTCTGGGGGCCCTGAGGGCAGTATGATGGCCTCTGATTATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp CACAGCAGACCCTCATCTGAGGCCGGTGGGAGCACAGGTATCCAGGCTTTGCTCCTGATGCTGACGTTCTaGGGAAGTGGTGGCTGCACA +
Preference number: 5 (lower is better)
Translates to: HSRPSSEAGGSTGIQALLLMLTF*GSGGCT
Trigger: TGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAG...GAGCAAAGCCTGGATACCTGTGCTCCCACCGGCCTCAGATGAGGGTCTGCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS GCA 90 bp TTATGGGCAGAGTCACTGGGTTGTCCCGTGCCTCCTGTTCCTCCATaGTCAGCTCAACTGGAGGGTTCTCCTTTGGCTCCACAGAAGGGC +
Preference number: 5 (lower is better)
Translates to: LWAESLGCPVPPVPP*SAQLEGSPLAPQKG
Trigger: GCCCTTCTGTGGAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCATGGAGGAACAGGAGGCACGGGACAACCCAGTGACTCTGCCCATAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp GCACAGGTATCCAGGCTTTGCTCTGGAGGGAGAACTAACGAACAGCTCAGCTGTATGAGGCAGCTGGGGTaGTATCAGGCCCGGATGGTG +
Preference number: 5 (lower is better)
Translates to: AQVSRLCSGGRTNEQLSCMRQLG*YQARMV
Trigger: CACCATCCGGGCCTGATACAACCCCAGCTGCCTCAT...ACAGCTGAGCTGTTCGTTAGTTCTCCCTCCAGAGCAAAGCCTGGATACCTGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp GCCCAAGCATCCATGGGCAGAAAGGGTAGAGTCCCAGATCATGTCTCCACCCATTCTAGGTTCTCTGTCTaGCTGTCCTCCCAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: AQASMGRKGRVPDHVSTHSRFSV*LSSQLS
Trigger: GGACAGCTGGGAGGACAGCAAGACAGAGAACCTAGA...ATGGGTGGAGACATGATCTGGGACTCTACCCTTTCTGCCCATGGATGCTTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CAA 90 bp ACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAATGGCCTGGAGGGGACTaGGCAGCCTGGCTCACACTT +
Preference number: 5 (lower is better)
Translates to: TCGPQEAMWEELFSLIQKWPGGD*AAWLTL
Trigger: AAGTGTGAGCCAGGCTGCCAAGTCCCCTCCAGGCCA...TTTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp GCACAGGTATCCAGGCTTTGCTCTGGAGGGAGAACTAACGAACAGCTCAGCTGTCTGATGCTGACGTTCTaGGGAAGTGGTGGCTGCACA +
Preference number: 5 (lower is better)
Translates to: AQVSRLCSGGRTNEQLSCLMLTF*GSGGCT
Trigger: TGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAG...ACAGCTGAGCTGTTCGTTAGTTCTCCCTCCAGAGCAAAGCCTGGATACCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp ACGTGTGGCCCACAAGAGGCCATGTGGGAAGAGCTATTCAGTCTCATCCAAAAATGGAACCAGTTGCGCTaGACCTCCAGGGGGCAGACA +
Preference number: 5 (lower is better)
Translates to: TCGPQEAMWEELFSLIQKWNQLR*TSRGQT
Trigger: TGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCA...TTTTTGGATGAGACTGAATAGCTCTTCCCACATGGCCTCTTGTGGGCCACACGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 90 bp ACTGAATGGCTGGCGCCTGGGGCATGGGCTGATAGGGAAACTTTTTaGCAGACAAGTCCTGGACTAGGTCCTCAGTCTCAGAACACAGAC +
Preference number: 5 (lower is better)
Translates to: TEWLAPGAWADRETF*QTSPGLGPQSQNTD
Trigger: GTCTGTGTTCTGAGACTGAGGACCTAGTCCAGGACTTGTCTGTCAAAAAGTTTCCCTATCAGCCCATGCCCCAGGCGCCAGCCATTCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp TGCAAGGCACTTTGGCATTCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCCTGGAGGGTTCTCCTTaGGCTCCACAGAAGGGCTCC +
Preference number: 5 (lower is better)
Translates to: CKALWHSHLNMEATPVCFLEGSP*APQKGS
Trigger: GGAGCCCTTCTGTGGAGCCAAAGGAGAACCCTCCAG...GAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CCA 90 bp AGAGACCTTTACCTCCATCCTGGAACAGGAGGCTCTTGCTGGGGTTaGGGATCTTTTCCTTCCACTTCCTGTACGTCCTGTATACAGAGA +
Preference number: 5 (lower is better)
Translates to: RDLYLHPGTGGSCWG*GSFPSTSCTSCIQR
Trigger: TCTCTGTATACAGGACGTACAGGAAGTGGAAGGAAAAGATCCCCAACCCCAGCAAGAGCCTCCTGTTCCAGGATGGAGGTAAAGGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp TCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCACTTTGTGGAACCAGTTGCGCTaGACCTCCAGGGGGCAGACA +
Preference number: 5 (lower is better)
Translates to: SHLNMEATPVCFSRVVTLWNQLR*TSRGQT
Trigger: TGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCA...CAAAGTGACCACTCTAGAGAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp TGCAAGGCACTTTGGCATTCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCCAGCCTGGCTCACACTaGGAGGCAGCTCCACATAGT +
Preference number: 5 (lower is better)
Translates to: CKALWHSHLNMEATPVCFQPGSH*EAAPHS
Trigger: ACTATGTGGAGCTGCCTCCAAGTGTGAGCCAGGCTG...GAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGAATGCCAAAGTGCCTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp CTCATCCCCACTCCAACAGGTCAGAGGAATAGGAAGGAAGTTCCCATAGAAGGCGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTGCA +
Preference number: 5 (lower is better)
Translates to: LIPTPTGQRNRKEVPIEGVRGDT*LSSKCA
Trigger: TGCACATTTGGAAGACAACAACGTGTCACCTCTCAC...GCCTTCTATGGGAACTTCCTTCCTATTCCTCTGACCTGTTGGAGTGGGGATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp ACTCAAGATGTTAGTGGTTTTCTTTGCTGCAATGAACAGAGACCAAGGGACATTTGGCCTGGAGGGGACTaGGCAGCCTGGCTCACACTT +
Preference number: 5 (lower is better)
Translates to: TQDVSGFLCCNEQRPRDIWPGGD*AAWLTL
Trigger: AAGTGTGAGCCAGGCTGCCAAGTCCCCTCCAGGCCA...AATGTCCCTTGGTCTCTGTTCATTGCAGCAAAGAAAACCACTAACATCTTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp TCCAGGTCCATAGAACACATCAAGACTGAACTCTGTAGAGAGATCATGTGTTCTTCTAGGTTCTCTGTCTaGCTGTCCTCCCAGCTGTCC +
Preference number: 5 (lower is better)
Translates to: SRSIEHIKTELCREIMCSSRFSV*LSSQLS
Trigger: GGACAGCTGGGAGGACAGCAAGACAGAGAACCTAGA...AGAACACATGATCTCTCTACAGAGTTCAGTCTTGATGTGTTCTATGGACCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp TCACTTTGTAGACCAGGCTGGACTCAAACTCAGAAATCTGCCTGCCTCTGCCTCAGAGGTGACACGTTGTaGTCTTCCAAATGTGCATAT +
Preference number: 5 (lower is better)
Translates to: SLCRPGWTQTQKSACLCLRGDTL*SSKCAY
Trigger: ATATGCACATTTGGAAGACAACAACGTGTCACCTCT...GAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGTCCAGCCTGGTCTACAAAGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAAATGAGGCAGCTGGGGTaGTATCAGGCCCGGATGGTG +
Preference number: 5 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQMRQLG*YQARMV
Trigger: CACCATCCGGGCCTGATACAACCCCAGCTGCCTCAT...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAACTGGAGGGTTCTCCTTaGGCTCCACAGAAGGGCTCC +
Preference number: 5 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQLEGSP*APQKGS
Trigger: GGAGCCCTTCTGTGGAGCCAAAGGAGAACCCTCCAG...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 90 bp GTCCGATTTCTTCTTGTACTGGACCTGGAATGTGTGCTCAATGAATaGGTAAGCCATCTTCTGAGTTTCCCAATGCAGGCTGTAGCTGTC +
Preference number: 5 (lower is better)
Translates to: VRFLLVLDLECVLNE*VSHLLSFPMQAVAV
Trigger: GACAGCTACAGCCTGCATTGGGAAACTCAGAAGATGGCTTACTCATTCATTGAGCACACATTCCAGGTCCAGTACAAGAAGAAATCGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS TCA 90 bp AGCTGTCCGATTTCTTCTTGTACTGGACCTGGAATGTGTGCTCAATaGATGAGTAAGCCATCTTCTGAGTTTCCCAATGCAGGCTGTAGC +
Preference number: 5 (lower is better)
Translates to: SCPISSCTGPGMCAQ*MSKPSSEFPNAGCS
Trigger: GCTACAGCCTGCATTGGGAAACTCAGAAGATGGCTTACTCATTCATTGAGCACACATTCCAGGTCCAGTACAAGAAGAAATCGGACAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp AAGTCTCTCACTCAAGGCTTTAGACACAGAAGGAACCAGAAAGAACATAAACAACAGCCTGGCTCACACTaGGAGGCAGCTCCACATAGT +
Preference number: 5 (lower is better)
Translates to: KSLTQGFRHRRNQKEHKQQPGSH*EAAPHS
Trigger: ACTATGTGGAGCTGCCTCCAAGTGTGAGCCAGGCTG...TTGTTTATGTTCTTTCTGGTTCCTTCTGTGTCTAAAGCCTTGAGTGAGAGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp TCACATCTTAACATGGAGGCCACTCCTGTTTGTTTCTCTAGAGTGGTCACTTTGGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTGCA +
Preference number: 5 (lower is better)
Translates to: SHLNMEATPVCFSRVVTLVRGDT*LSSKCA
Trigger: TGCACATTTGGAAGACAACAACGTGTCACCTCTCAC...CAAAGTGACCACTCTAGAGAAACAAACAGGAGTGGCCTCCATGTTAAGATGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS-3UTR CAA 90 bp AATTATTTTATTTATGAGTACACTGTTGCTGTCTCCAAACACACCAGAAGAGGGCTGATGCTGACGTTCTaGGGAAGTGGTGGCTGCACA +
Preference number: 5 (lower is better)
Translates to: NYFIYEYTVAVSKHTRRGLMLTF*GSGGCT
Trigger: TGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAG...CCCTCTTCTGGTGTGTTTGGAGACAGCAACAGTGTACTCATAAATAAAATAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS-3UTR CAA 90 bp GAACTCTGTAGAGAGATCATGTGTTCTAGAAAACTCCAAGTCTCTCACTCAAGGAGAGGTGACACGTTGTaGTCTTCCAAATGTGCATAT +
Preference number: 5 (lower is better)
Translates to: ELCREIMCSRKLQVSHSRRGDTL*SSKCAY
Trigger: ATATGCACATTTGGAAGACAACAACGTGTCACCTCT...CCTTGAGTGAGAGACTTGGAGTTTTCTAGAACACATGATCTCTCTACAGAGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 72 bp CTCTGGGCTCCATCTGCTGGGTCTCCCAGACAAGCTTaGACCCGGGGACAGCCGAGTGCGCACACGGGCAGC +
Preference number: 6 (lower is better)
Translates to: LWAPSAGSPRQA*TRGQPSAHTGS
Trigger: GCTGCCCGTGTGCGCACTCGGCTGTCCCCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp GAGCCTGGCAGTGCTGGCTTCAGGCTCCCACCCACCTaGGGGGAACCCAGCTGGTCTGGGAGATCAGGCAGA +
Preference number: 6 (lower is better)
Translates to: EPGSAGFRLPPT*GEPSWSGRSGR
Trigger: TCTGCCTGATCTCCCAGACCAGCTGGGTTCCCCCCAGGTGGGTGGGAGCCTGAAGCCAGCACTGCCAGGCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS GCA 72 bp ACTGGCTGTGTGCACTGGGCTCAGGCACAGGTAGACTaGAATGGTAGCGGGTGTAGACACTGGCCCCCGGCG +
Preference number: 6 (lower is better)
Translates to: TGCVHWAQAQVD*NGSGCRHWPPA
Trigger: CGCCGGGGGCCAGTGTCTACACCCGCTACCATTGCAGTCTACCTGTGCCTGAGCCCAGTGCACACAGCCAGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 72 bp TGGCCCCTGGAGAGCGGGGTTCTTAGTGGCGAAGGCTaGCATGCTGCCAGGAGGCCAGAGACCTTTACCTCC +
Preference number: 6 (lower is better)
Translates to: WPLESGVLSGEG*HAARRPETFTS
Trigger: GGAGGTAAAGGTCTCTGGCCTCCTGGCAGCATGGCAGCCTTCGCCACTAAGAACCCCGCTCTCCAGGGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp GCCCTCAGGGCCCCCAGAGCTTATGGGCAGAGTCACTaGGTTGTCCCGTGCCTCCTGTTCCTCCATGCTCAG +
Preference number: 6 (lower is better)
Translates to: ALRAPRAYGQSH*VVPCLLFLHAQ
Trigger: CTGAGCATGGAGGAACAGGAGGCACGGGACAACCCAGTGACTCTGCCCATAAGCTCTGGGGGCCCTGAGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 90 bp AGCCTGGCCCTGCCCCATCACCTGGGACAATGGAACCAGTTGCGCTaGACCTCCAGGGGGCAGACACATGTACTCCAAGGAGCCTGGCAG +
Preference number: 6 (lower is better)
Translates to: SLALPHHLGQWNQLR*TSRGQTHVLQGAWQ
Trigger: CTGCCAGGCTCCTTGGAGTACATGTGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCATTGTCCCAGGTGATGGGGCAGGGCCAGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS GCA 72 bp CTGGCTGGGAGTCCCAGTGAACCTCTGGGCTCCATCTaGTGGGTCTCCCAGACAAGCTTGAACCCGGGGACA +
Preference number: 6 (lower is better)
Translates to: LAGSPSEPLGSI*WVSQTSLNPGT
Trigger: TGTCCCCGGGTTCAAGCTTGTCTGGGAGACCCAGCAGATGGAGCCCAGAGGTTCACTGGGACTCCCAGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp GCACAGGTAGACTGCAATGGTAGCGGGTGTAGACACTaGCCCCCGGCGGCTCCTTCACCACCGGAGAGCATT +
Preference number: 6 (lower is better)
Translates to: AQVDCNGSGCRH*PPAAPSPPESI
Trigger: AATGCTCTCCGGTGGTGAAGGAGCCGCCGGGGGCCAGTGTCTACACCCGCTACCATTGCAGTCTACCTGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp CCCTGTTGCTCAGCAAGAAGCCTGCTCTGTGGCCCCTaGAGAGCGGGGTTCTTAGTGGCGAAGGCTGCCATG +
Preference number: 6 (lower is better)
Translates to: PCCSARSLLCGP*RAGFLVAKAAM
Trigger: CATGGCAGCCTTCGCCACTAAGAACCCCGCTCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGCAACAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp ATCACTGTGGGGCTGCTTGCCACAGGAGGAGCAGGATaGCCTGGAGGGGACTTGGCAGCCTGGCTCACACTT +
Preference number: 6 (lower is better)
Translates to: ITVGLLATGGAG*PGGDLAAWLTL
Trigger: AAGTGTGAGCCAGGCTGCCAAGTCCCCTCCAGGCCATCCTGCTCCTCCTGTGGCAAGCAGCCCCACAGTGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 90 bp GTGCCTCCTGTTCCTCCATGCTCAGCTCAACTGGAGGGTTCTCCTTaGGCTCCACAGAAGGGCTCCCTGAGGTCTCCAGGCTGGACCCAC +
Preference number: 6 (lower is better)
Translates to: VPPVPPCSAQLEGSP*APQKGSLRSPGWTH
Trigger: GTGGGTCCAGCCTGGAGACCTCAGGGAGCCCTTCTGTGGAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCATGGAGGAACAGGAGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 90 bp ATACTGCCCTCAGGGCCCCCAGAGCTTATGGGCAGAGTCACTGGGTaGTCCCGTGCCTCCTGTTCCTCCATGCTCAGCTCAACTGGAGGG +
Preference number: 6 (lower is better)
Translates to: ILPSGPPELMGRVTG*SRASCSSMLSSTGG
Trigger: CCCTCCAGTTGAGCTGAGCATGGAGGAACAGGAGGCACGGGACAACCCAGTGACTCTGCCCATAAGCTCTGGGGGCCCTGAGGGCAGTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CCA 72 bp GTCTCCAGGCTGGACCCACACTGCACATCCATAGCCTaGCCCTGCCCCATCACCTGGGACAATGGAACCAGT +
Preference number: 6 (lower is better)
Translates to: VSRLDPHCTSIA*PCPITWDNGTS
Trigger: ACTGGTTCCATTGTCCCAGGTGATGGGGCAGGGCCAGGCTATGGATGTGCAGTGTGGGTCCAGCCTGGAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CCA 72 bp GTCCCGTGCCTCCTGTTCCTCCATGCTCAGCTCAACTaGAGGGTTCTCCTTTGGCTCCACAGAAGGGCTCCC +
Preference number: 6 (lower is better)
Translates to: VPCLLFLHAQLN*RVLLWLHRRAP
Trigger: GGGAGCCCTTCTGTGGAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCATGGAGGAACAGGAGGCACGGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CCA 72 bp AGGCCATCATACTGCCCTCAGGGCCCCCAGAGCTTATaGGCAGAGTCACTGGGTTGTCCCGTGCCTCCTGTT +
Preference number: 6 (lower is better)
Translates to: RPSYCPQGPQSL*AESLGCPVPPV
Trigger: AACAGGAGGCACGGGACAACCCAGTGACTCTGCCCATAAGCTCTGGGGGCCCTGAGGGCAGTATGATGGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 72 bp CTGGCCCTGCCCCATCACCTGGGACAATGGAACCAGTaGCGCTTGACCTCCAGGGGGCAGACACATGTACTC +
Preference number: 6 (lower is better)
Translates to: LALPHHLGQWNQ*RLTSRGQTHVL
Trigger: GAGTACATGTGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCATTGTCCCAGGTGATGGGGCAGGGCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 72 bp TGGAGGGTTCTCCTTTGGCTCCACAGAAGGGCTCCCTaGGGTCTCCAGGCTGGACCCACACTGCACATCCAT +
Preference number: 6 (lower is better)
Translates to: WRVLLWLHRRAP*GLQAGPTLHIH
Trigger: ATGGATGTGCAGTGTGGGTCCAGCCTGGAGACCTCAGGGAGCCCTTCTGTGGAGCCAAAGGAGAACCCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS GCA 72 bp GCCACGGTCCATGATCTTCTCCTCTTGGTCCCCTGTTaGTCAGCAAGAAGCCTGCTCTGTGGCCCCTGGAGA +
Preference number: 6 (lower is better)
Translates to: ATVHDLLLLVPC*SARSLLCGPWR
Trigger: TCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGCAACAGGGGACCAAGAGGAGAAGATCATGGACCGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS CCA 72 bp CTCACCCTGGCGCAGTATGAGGTGTCTGGCTCCAGCTaGGAGAGGTCCATGCTATGGGCTCGATCTAGGTTC +
Preference number: 6 (lower is better)
Translates to: LTLAQYEVSGSS*ERSMLWARSRF
Trigger: GAACCTAGATCGAGCCCATAGCATGGACCTCTCCCAGCTGGAGCCAGACACCTCATACTGCGCCAGGGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 72 bp GTTCCTCCATGCTCAGCTCAACTGGAGGGTTCTCCTTaGGCTCCACAGAAGGGCTCCCTGAGGTCTCCAGGC +
Preference number: 6 (lower is better)
Translates to: VPPCSAQLEGSP*APQKGSLRSPG
Trigger: GCCTGGAGACCTCAGGGAGCCCTTCTGTGGAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCATGGAGGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 72 bp TGCCCCATCACCTGGGACAATGGAACCAGTTGCGCTTaGCCTCCAGGGGGCAGACACATGTACTCCAAGGAG +
Preference number: 6 (lower is better)
Translates to: CPITWDNGTSCA*PPGGRHMYSKE
Trigger: CTCCTTGGAGTACATGTGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCATTGTCCCAGGTGATGGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS GCA 72 bp GTAGCACTGCAGAGTCTTCAGAGGGACCGTTTCTTCTaGCTCTGTCACCCCGTGTCCCCAACAGAGAGCCAC +
Preference number: 6 (lower is better)
Translates to: VALQSLQRDRFF*LCHPVSPTESH
Trigger: GTGGCTCTCTGTTGGGGACACGGGGTGACAGAGGCAGAAGAAACGGTCCCTCTGAAGACTCTGCAGTGCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000096355.4
ENSMUST00000229034.2
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 72 bp GAGTCACTGGGTTGTCCCGTGCCTCCTGTTCCTCCATaGTCAGCTCAACTGGAGGGTTCTCCTTTGGCTCCA +
Preference number: 6 (lower is better)
Translates to: ESLGCPVPPVPP*SAQLEGSPLAP
Trigger: TGGAGCCAAAGGAGAACCCTCCAGTTGAGCTGAGCATGGAGGAACAGGAGGCACGGGACAACCCAGTGACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 72 bp CTGCCCCATCACCTGGGACAATGGAACCAGTTGCGCTaGACCTCCAGGGGGCAGACACATGTACTCCAAGGA +
Preference number: 6 (lower is better)
Translates to: LPHHLGQWNQLR*TSRGQTHVLQG
Trigger: TCCTTGGAGTACATGTGTCTGCCCCCTGGAGGTCAAGCGCAACTGGTTCCATTGTCCCAGGTGATGGGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 90 bp CACTCCAGCAGGAAACGATCCTCAGAGGAGCTGATGCTGACGTTCTaGGGAAGTGGTGGCTGCACATTCTGGGCAAGTGGCACCATGAGC +
Preference number: 6 (lower is better)
Translates to: HSSRKRSSEELMLTF*GSGGCTFWASGTMS
Trigger: GCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAGCTCCTCTGAGGATCGTTTCCTGCTGGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 72 bp GAGGAGCTGATGCTGACGTTCTTGGGAAGTGGTGGCTaGACATTCTGGGCAAGTGGCACCATGAGCTGGATG +
Preference number: 6 (lower is better)
Translates to: EELMLTFLGSGG*TFWASGTMSWM
Trigger: CATCCAGCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAGCTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp CTCAGAGGAGCTGATGCTGACGTTCTTGGGAAGTGGTaGCTGCACATTCTGGGCAAGTGGCACCATGAGCTG +
Preference number: 6 (lower is better)
Translates to: LRGADADVLGKW*LHILGKWHHEL
Trigger: CAGCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAGCTCCTCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS TCA 72 bp CTGGCGCCTGGGGCATGGGCTGATAGGGAAACTTTTTaGCAGACAAGTCCTGGACTAGGTCCTCAGTCTCAG +
Preference number: 6 (lower is better)
Translates to: LAPGAWADRETF*QTSPGLGPQSQ
Trigger: CTGAGACTGAGGACCTAGTCCAGGACTTGTCTGTCAAAAAGTTTCCCTATCAGCCCATGCCCCAGGCGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CCA 72 bp GTTCTTGGGAAGTGGTGGCTGCACATTCTGGGCAAGTaGCACCATGAGCTGGATGCCCAGATCACTATCTGG +
Preference number: 6 (lower is better)
Translates to: VLGKWWLHILGK*HHELDAQITIW
Trigger: CCAGATAGTGATCTGGGCATCCAGCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp ATGCTGACGTTCTTGGGAAGTGGTGGCTGCACATTCTaGGCAAGTGGCACCATGAGCTGGATGCCCAGATCA +
Preference number: 6 (lower is better)
Translates to: MLTFLGSGGCTF*ASGTMSWMPRS
Trigger: TGATCTGGGCATCCAGCTCATGGTGCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAACGTCAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp ATCCTCAGAGGAGCTGATGCTGACGTTCTTGGGAAGTaGTGGCTGCACATTCTGGGCAAGTGGCACCATGAG +
Preference number: 6 (lower is better)
Translates to: ILRGADADVLGK*WLHILGKWHHE
Trigger: CTCATGGTGCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAGCTCCTCTGAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp GAGGTTCAAAGGCCACGGTCCATGATCTTCTCCTCTTaGTCCCCTGTTGCTCAGCAAGAAGCCTGCTCTGTG +
Preference number: 6 (lower is better)
Translates to: EVQRPRSMIFSS*SPVAQQEACSV
Trigger: CACAGAGCAGGCTTCTTGCTGAGCAACAGGGGACCAAGAGGAGAAGATCATGGACCGTGGCCTTTGAACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229678.2
CDS CAA 72 bp AGGAAACGATCCTCAGAGGAGCTGATGCTGACGTTCTaGGGAAGTGGTGGCTGCACATTCTGGGCAAGTGGC +
Preference number: 6 (lower is better)
Translates to: RKRSSEELMLTF*GSGGCTFWASG
Trigger: GCCACTTGCCCAGAATGTGCAGCCACCACTTCCCAAGAACGTCAGCATCAGCTCCTCTGAGGATCGTTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 72 bp AGTCCTGGACTAGGTCCTCAGTCTCAGAACACAGACTaGGAGAGGGTGGCTTACTGTGTGGTGAGAGGGAGC +
Preference number: 6 (lower is better)
Translates to: SPGLGPQSQNTD*ERVAYCVVRGS
Trigger: GCTCCCTCTCACCACACAGTAAGCCACCCTCTCCAAGTCTGTGTTCTGAGACTGAGGACCTAGTCCAGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 90 bp AGCTGGGAGAGGTCCATGCTATGGGCTCGATCTAGGTTCTCTGTCTaGCTGTCCTCCCAGCTGTCCGATTTCTTCTTGTACTGGACCTGG +
Preference number: 6 (lower is better)
Translates to: SWERSMLWARSRFSV*LSSQLSDFFLYWTW
Trigger: CCAGGTCCAGTACAAGAAGAAATCGGACAGCTGGGAGGACAGCAAGACAGAGAACCTAGATCGAGCCCATAGCATGGACCTCTCCCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 72 bp AGTATGAGGTGTCTGGCTCCAGCTGGGAGAGGTCCATaGTATGGGCTCGATCTAGGTTCTCTGTCTTGCTGT +
Preference number: 6 (lower is better)
Translates to: SMRCLAPAGRGP*YGLDLGSLSCC
Trigger: ACAGCAAGACAGAGAACCTAGATCGAGCCCATAGCATGGACCTCTCCCAGCTGGAGCCAGACACCTCATACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp TCAAACTCTATGTCCTTTGATGAAAGCCAGGAGACCTaGGCATCCCCAAGGGACACACTCCACTCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: SNSMSFDESQET*ASPRDTLHSSR
Trigger: CCTGCTGGAGTGGAGTGTGTCCCTTGGGGATGCCCAGGTCTCCTGGCTTTCATCAAAGGACATAGAGTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 90 bp AGGAGTCCTGAAGCCGCTTATAAGCCACCTCAAACTCTATGTCCTTaGATGAAAGCCAGGAGACCTGGGCATCCCCAAGGGACACACTCC +
Preference number: 6 (lower is better)
Translates to: RSPEAAYKPPQTLCP*MKARRPGHPQGTHS
Trigger: GGAGTGTGTCCCTTGGGGATGCCCAGGTCTCCTGGCTTTCATCAAAGGACATAGAGTTTGAGGTGGCTTATAAGCGGCTTCAGGACTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS GCA 72 bp TTGTTGTCTTCCAAATGTGCATATGACTCCCCCTGTTaGTCAGCAAGAAGCCTGCTCTGTGGCCCCTGGAGA +
Preference number: 6 (lower is better)
Translates to: LLSSKCAYDSPC*SARSLLCGPWR
Trigger: TCTCCAGGGGCCACAGAGCAGGCTTCTTGCTGAGCAACAGGGGGAGTCATATGCACATTTGGAAGACAACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 72 bp AATGCAGGCTGTAGCTGTCTCTGTTCTTGGTCAGGTTaGGGGTTGGAGGCTCCATCTGGATGTGGTTATAGC +
Preference number: 6 (lower is better)
Translates to: NAGCSCLCSWSG*GLEAPSGCGYS
Trigger: GCTATAACCACATCCAGATGGAGCCTCCAACCCTCAACCTGACCAAGAACAGAGACAGCTACAGCCTGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CCA 72 bp AAGTGGCACCATGAGCTGGATGCCCAGATCACTATCTaGCCGGAAGGAGTAGTAGTCTTCGTTTGTGATGGA +
Preference number: 6 (lower is better)
Translates to: KWHHELDAQITI*PEGVVVFVCDG
Trigger: TCCATCACAAACGAAGACTACTACTCCTTCCGGCCAGATAGTGATCTGGGCATCCAGCTCATGGTGCCACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 72 bp AGGTCCATGCTATGGGCTCGATCTAGGTTCTCTGTCTaGCTGTCCTCCCAGCTGTCCGATTTCTTCTTGTAC +
Preference number: 6 (lower is better)
Translates to: RSMLWARSRFSV*LSSQLSDFFLY
Trigger: GTACAAGAAGAAATCGGACAGCTGGGAGGACAGCAAGACAGAGAACCTAGATCGAGCCCATAGCATGGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 72 bp GAAGTTGCTCTGTGGATTCGGATGAGGCAGCTGGGGTaGTATCAGGCCCGGATGGTGGAACTCGAATTATAT +
Preference number: 6 (lower is better)
Translates to: EVALWIRMRQLG*YQARMVELELY
Trigger: ATATAATTCGAGTTCCACCATCCGGGCCTGATACAACCCCAGCTGCCTCATCCGAATCCACAGAGCAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 72 bp TCTGTCTTGCTGTCCTCCCAGCTGTCCGATTTCTTCTaGTACTGGACCTGGAATGTGTGCTCAATGAATGAG +
Preference number: 6 (lower is better)
Translates to: SVLLSSQLSDFF*YWTWNVCSMNE
Trigger: CTCATTCATTGAGCACACATTCCAGGTCCAGTACAAGAAGAAATCGGACAGCTGGGAGGACAGCAAGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 90 bp GGAACTCGAATTATATTAGGGTCCTCTATAGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTGCATATGACTCCCCCTGTTGCTCAGCA +
Preference number: 6 (lower is better)
Translates to: GTRIILGSSIVRGDT*LSSKCAYDSPCCSA
Trigger: TGCTGAGCAACAGGGGGAGTCATATGCACATTTGGAAGACAACAACGTGTCACCTCTCACTATAGAGGACCCTAATATAATTCGAGTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 72 bp CTTCTTGTACTGGACCTGGAATGTGTGCTCAATGAATaGGTAAGCCATCTTCTGAGTTTCCCAATGCAGGCT +
Preference number: 6 (lower is better)
Translates to: LLVLDLECVLNE*VSHLLSFPMQA
Trigger: AGCCTGCATTGGGAAACTCAGAAGATGGCTTACTCATTCATTGAGCACACATTCCAGGTCCAGTACAAGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 72 bp CATCTGGATGTGGTTATAGCTCATGATGAACTTCCCTaGTTCCAGGTGCTTAACAGAGACTGTGTACTGGCT +
Preference number: 6 (lower is better)
Translates to: HLDVVIAHDELP*FQVLNRDCVLA
Trigger: AGCCAGTACACAGTCTCTGTTAAGCACCTGGAACAAGGGAAGTTCATCATGAGCTATAACCACATCCAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3
CDS CAA 72 bp ATATTAGGGTCCTCTATAGTGAGAGGTGACACGTTGTaGTCTTCCAAATGTGCATATGACTCCCCCTGTTGC +
Preference number: 6 (lower is better)
Translates to: ILGSSIVRGDTL*SSKCAYDSPCC
Trigger: GCAACAGGGGGAGTCATATGCACATTTGGAAGACAACAACGTGTCACCTCTCACTATAGAGGACCCTAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 90 bp ACTCGAATTATATTAGGGTCCTCTATAGTGAGAGGTGACACGTTGTaGTCTTCCAAATGTGCATATGACTCCCCCTGTTGCTCAGCAAGA +
Preference number: 6 (lower is better)
Translates to: TRIILGSSIVRGDTL*SSKCAYDSPCCSAR
Trigger: TCTTGCTGAGCAACAGGGGGAGTCATATGCACATTTGGAAGACAACAACGTGTCACCTCTCACTATAGAGGACCCTAATATAATTCGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS CAA 72 bp ATTATATTAGGGTCCTCTATAGTGAGAGGTGACACGTaGTTGTCTTCCAAATGTGCATATGACTCCCCCTGT +
Preference number: 6 (lower is better)
Translates to: IILGSSIVRGDT*LSSKCAYDSPC
Trigger: ACAGGGGGAGTCATATGCACATTTGGAAGACAACAACGTGTCACCTCTCACTATAGAGGACCCTAATATAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000096355.4
ENSMUST00000230264.3
CDS TCA 72 bp ATTTCTTCTTGTACTGGACCTGGAATGTGTGCTCAATaGATGAGTAAGCCATCTTCTGAGTTTCCCAATGCA +
Preference number: 6 (lower is better)
Translates to: ISSCTGPGMCAQ*MSKPSSEFPNA
Trigger: TGCATTGGGAAACTCAGAAGATGGCTTACTCATTCATTGAGCACACATTCCAGGTCCAGTACAAGAAGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000096355.4
ENSMUST00000229678.2
ENSMUST00000230264.3