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Pregenerated sensors for CSF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018916

Ensembl transcript IDs: ENSMUST00000019060.6

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TCAGAGGGCTATACTGCCTTCCAACTGTGGCTGTGCCACATCTCTTGGTCCCTTACAAAAGCAGCAGTCTaGGAAGCTGGATTCAGAGCT +
Preference number: 2 (lower is better)
Translates to: SEGYTAFQLWLCHISWSLTKAAV*EAGFRA
Trigger: AGCTCTGAATCCAGCTTCTCAGACTGCTGCTTTTGT...AAGGGACCAAGAGATGTGGCACAGCCACAGTTGGAAGGCAGTATAGCCCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
3UTR TCA 72 bp AGAAAATATCTCTCGTTTGTCTTCCGCTGTCCAAGCTaGGTCAGCGTTTTCAGAGGGCTATACTGCCTTCCA +
Preference number: 3 (lower is better)
Translates to: RKYLSFVFRCPS*VSVFRGLYCLP
Trigger: TGGAAGGCAGTATAGCCCTCTGAAAACGCTGACTCAGCTTGGACAGCGGAAGACAAACGAGAGATATTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS-3UTR TCA 90 bp AGGCAGAAATTCCAAGTTCCTGGCTCATTACGCAGGCACAAAAGCAGCAGTCTGGGTTCAGGGCTTCTTTaGTGGCCTCTACATGCTTCC +
Preference number: 4 (lower is better)
Translates to: RQKFQVPGSLRRHKSSSLGSGLL*WPLHAS
Trigger: GGAAGCATGTAGAGGCCATCAAAGAAGCCCTGAACC...CAGACTGCTGCTTTTGTGCCTGCGTAATGAGCCAGGAACTTGGAATTTCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
3UTR CAA 72 bp CTATACTGCCTTCCAACTGTGGCTGTGCCACATCTCTaGGTCCCTTTAAGGCAGAAATTCCAAGTTCCTGGC +
Preference number: 4 (lower is better)
Translates to: LYCLPTVAVPHL*VPLRQKFQVPG
Trigger: GCCAGGAACTTGGAATTTCTGCCTTAAAGGGACCAAGAGATGTGGCACAGCCACAGTTGGAAGGCAGTATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS-3UTR GCA 90 bp CAGAGGGCTATACTGCCTTCCAACTGTGGCTGTGCCACATCTCTTGGTCCCTTTGGCTGTAGACCACAATaGCCAGGAAAAGTAAATTCT +
Preference number: 4 (lower is better)
Translates to: QRAILPSNCGCATSLGPFGCRPQ*PGKVNS
Trigger: AGAATTTACTTTTCCTGGGCATTGTGGTCTACAGCC...AAAGGGACCAAGAGATGTGGCACAGCCACAGTTGGAAGGCAGTATAGCCCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS GCA 90 bp GGCATGTCATCCAGGAGGTTCAGGGCTTCTTTGATGGCCTCTACATaGTTCCAAGGCCGGGTGACAGTGATGGGTGAGCGGGTGGGTGCT +
Preference number: 5 (lower is better)
Translates to: GMSSRRFRASLMAST*FQGRVTVMGERVGA
Trigger: AGCACCCACCCGCTCACCCATCACTGTCACCCGGCCTTGGAAGCATGTAGAGGCCATCAAAGAAGCCCTGAACCTCCTGGATGACATGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS CCA 90 bp ATCCGCATAGGTGGTAACTTGTGTTTCACAGTCCGTTTCCGGAGTTaGGGGGCAGTATGTCTGGTAGTAGCTGGCTGTCATGTTCAAGGC +
Preference number: 5 (lower is better)
Translates to: IRIGGNLCFTVRFRS*GAVCLVVAGCHVQG
Trigger: GCCTTGAACATGACAGCCAGCTACTACCAGACATACTGCCCCCCAACTCCGGAAACGGACTGTGAAACACAAGTTACCACCTATGCGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS GCA 90 bp ATGTTCAAGGCGCCCTTGAGTTTGGTGAAATTGCCCCGTAGACCCTaGTCGAATATCTTCAGGCGGGTCTGCACACATGTTAGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: MFKAPLSLVKLPRRP*SNIFRRVCTHVSFL
Trigger: CAAGAAGCTAACATGTGTGCAGACCCGCCTGAAGATATTCGAGCAGGGTCTACGGGGCAATTTCACCAAACTCAAGGGCGCCTTGAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS GCA 90 bp GTGAAATTGCCCCGTAGACCCTGCTCGAATATCTTCAGGCGGGTCTaGACACATGTTAGCTTCTTGAAGGAGAACTCGTTAGAGACGACT +
Preference number: 5 (lower is better)
Translates to: VKLPRRPCSNIFRRV*THVSFLKENSLETT
Trigger: AGTCGTCTCTAACGAGTTCTCCTTCAAGAAGCTAACATGTGTGCAGACCCGCCTGAAGATATTCGAGCAGGGTCTACGGGGCAATTTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS CAA 72 bp GTGACAGGCATGTCATCCAGGAGGTTCAGGGCTTCTTaGATGGCCTCTACATGCTTCCAAGGCCGGGTGACA +
Preference number: 6 (lower is better)
Translates to: VTGMSSRRFRAS*MASTCFQGRVT
Trigger: TGTCACCCGGCCTTGGAAGCATGTAGAGGCCATCAAAGAAGCCCTGAACCTCCTGGATGACATGCCTGTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS GCA 72 bp GCGCCCTTGAGTTTGGTGAAATTGCCCCGTAGACCCTaGTCGAATATCTTCAGGCGGGTCTGCACACATGTT +
Preference number: 6 (lower is better)
Translates to: APLSLVKLPRRP*SNIFRRVCTHV
Trigger: AACATGTGTGCAGACCCGCCTGAAGATATTCGAGCAGGGTCTACGGGGCAATTTCACCAAACTCAAGGGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6
CDS CCA 72 bp GGTGGTAACTTGTGTTTCACAGTCCGTTTCCGGAGTTaGGGGGCAGTATGTCTGGTAGTAGCTGGCTGTCAT +
Preference number: 6 (lower is better)
Translates to: GGNLCFTVRFRS*GAVCLVVAGCH
Trigger: ATGACAGCCAGCTACTACCAGACATACTGCCCCCCAACTCCGGAAACGGACTGTGAAACACAAGTTACCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019060.6