Pregenerated sensors for CSDC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042109Ensembl transcript IDs: ENSMUST00000038757.8, ENSMUST00000140209.2
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGGCAAAGCCAGTGGTCTCCCTGGCTGAGGACCGATCCTTTGGGTaGCTGGACCTGGCCTTGCCTGAGGTGACATGTCAGTCCATCGCT | + |
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Preference number: 1 (lower is better) Translates to: GAKPVVSLAEDRSFG*LDLALPEVTCQSIA Trigger: AGCGATGGACTGACATGTCACCTCAGGCAAGGCCAGGTCCAGGCACCCAAAGGATCGGTCCTCAGCCAGGGAGACCACTGGCTTTGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 90 bp | CTGAGGACCGATCCTTTGGGTGCCTGGACCTGGCCTTGCCTGAGGTaGCATGTCAGTCCATCGCTGCATCCTCAGCTGCTGTCATGGCCA | + |
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Preference number: 1 (lower is better) Translates to: LRTDPLGAWTWPCLR*HVSPSLHPQLLSWP Trigger: TGGCCATGACAGCAGCTGAGGATGCAGCGATGGACTGACATGTCACCTCAGGCAAGGCCAGGTCCAGGCACCCAAAGGATCGGTCCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 90 bp | AGGGCACCAAACAGGCGGGGACAGGAAGATGAACTGGGCAGGTTATaGCAGGGATTGGCCAGGAACCTCCACGTTTTGCCCTCTTCCTCC | + |
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Preference number: 1 (lower is better) Translates to: RAPNRRGQEDELGRL*QGLARNLHVLPSSS Trigger: GGAGGAAGAGGGCAAAACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCTGCCCAGTTCATCTTCCTGTCCCCGCCTGTTTGGTGCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 90 bp | TTGCAGCCATGTTCTCAGGGCACCAAACAGGCGGGGACAGGAAGATaGACTGGGCAGGTTATGGCAGGGATTGGCCAGGAACCTCCACGT | + |
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Preference number: 1 (lower is better) Translates to: LQPCSQGTKQAGTGR*TGQVMAGIGQEPPR Trigger: ACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCTGCCCAGTTCATCTTCCTGTCCCCGCCTGTTTGGTGCCCTGAGAACATGGCTGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 90 bp | CTCCGTCCAACCCTAGGCCGGATCATACAAGTCACGGGTCACAGGTaGAAGCACACATTCACAGCCACAAGCACAGACAGACAGGCGGAC | + |
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Preference number: 1 (lower is better) Translates to: LRPTLGRIIQVTGHR*KHTFTATSTDRQAD Trigger: GTCCGCCTGTCTGTCTGTGCTTGTGGCTGTGAATGTGTGCTTCCACCTGTGACCCGTGACTTGTATGATCCGGCCTAGGGTTGGACGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 90 bp | GCCATGTTCTCAGGGCACCAAACAGGCGGGGACAGGAAGATGAACTaGGCAGGTTATGGCAGGGATTGGCCAGGAACCTCCACGTTTTGC | + |
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Preference number: 1 (lower is better) Translates to: AMFSGHQTGGDRKMN*AGYGRDWPGTSTFC Trigger: GCAAAACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCTGCCCAGTTCATCTTCCTGTCCCCGCCTGTTTGGTGCCCTGAGAACATGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR GCA 90 bp | TGTACGTGGCAGAGTTGGGAGGAAGGAGAAACACGCCTTGGTAGCTaGACTCCGTCCAACCCTAGGCCGGATCATACAAGTCACGGGTCA | + |
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Preference number: 1 (lower is better) Translates to: CTWQSWEEGETRLGS*TPSNPRPDHTSHGS Trigger: TGACCCGTGACTTGTATGATCCGGCCTAGGGTTGGACGGAGTGCAGCTACCAAGGCGTGTTTCTCCTTCCTCCCAACTCTGCCACGTACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR GCA 90 bp | GGAGAGAGGACTGGCCTACATAACAGGAGTGCTAAAGTTCCCTCCTaGTTGCAGCCATGTTCTCAGGGCACCAAACAGGCGGGGACAGGA | + |
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Preference number: 1 (lower is better) Translates to: GERTGLHNRSAKVPS*LQPCSQGTKQAGTG Trigger: TCCTGTCCCCGCCTGTTTGGTGCCCTGAGAACATGGCTGCAAGCAGGAGGGAACTTTAGCACTCCTGTTATGTAGGCCAGTCCTCTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 90 bp | CCCTCTTCCTCCCTAAAGGAGACCCCTACAAAGTACTCAGAGGCCTaGCTTGTGAGAGGAAGGGCCCAGGCTGTGGTACATAACCCAGGT | + |
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Preference number: 1 (lower is better) Translates to: PSSSLKETPTKYSEA*LVRGRAQAVVHNPG Trigger: ACCTGGGTTATGTACCACAGCCTGGGCCCTTCCTCTCACAAGCCAGGCCTCTGAGTACTTTGTAGGGGTCTCCTTTAGGGAGGAAGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 90 bp | GGAACAGGCTCACAGGAGAGGGGTCCCCCTGGGTTCTCAAGAACATaGCACAGACCCACAGAGACTCAGTGTATAGATAGTGGGCAAGAG | + |
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Preference number: 1 (lower is better) Translates to: GTGSQERGPPGFSRT*HRPTETQCIDSGQE Trigger: CTCTTGCCCACTATCTATACACTGAGTCTCTGTGGGTCTGTGTCATGTTCTTGAGAACCCAGGGGGACCCCTCTCCTGTGAGCCTGTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 90 bp | GCCCTTCCTGAGCCTGTGACCTCACTTATCCTCTGGTTAAGTAACTaGCTCTCTAGAAGGGACACAGCTCCAAAGGGACTCCAGGGAAGA | + |
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Preference number: 1 (lower is better) Translates to: ALPEPVTSLILWLSN*LSRRDTAPKGLQGR Trigger: TCTTCCCTGGAGTCCCTTTGGAGCTGTGTCCCTTCTAGAGAGCCAGTTACTTAACCAGAGGATAAGTGAGGTCACAGGCTCAGGAAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 90 bp | CTATTGTGCCAGGCCCTTCCTGAGCCTGTGACCTCACTTATCCTCTaGTTAAGTAACTGGCTCTCTAGAAGGGACACAGCTCCAAAGGGA | + |
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Preference number: 1 (lower is better) Translates to: LLCQALPEPVTSLIL*LSNWLSRRDTAPKG Trigger: TCCCTTTGGAGCTGTGTCCCTTCTAGAGAGCCAGTTACTTAACCAGAGGATAAGTGAGGTCACAGGCTCAGGAAGGGCCTGGCACAATAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 90 bp | TGGAATGCCTACAAGGCTACCTCGCAACCACTGACCCCTTCACCCTaGCTATCTGTGCTCACATTTTACTTCTGGGCTGGGTCTCATAAA | + |
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Preference number: 1 (lower is better) Translates to: WNAYKATSQPLTPSP*LSVLTFYFWAGSHK Trigger: TTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCACAGATAGCCAGGGTGAAGGGGTCAGTGGTTGCGAGGTAGCCTTGTAGGCATTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 90 bp | GTGTCTTTATTAACACAGTTCTGGGTTACAGGCTTGCTGGAGATTTaGACTCTGGTCCTCAAGGTTGCTGAGGACTGGTCTCCAGGGATA | + |
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Preference number: 1 (lower is better) Translates to: VSLLTQFWVTGLLEI*TLVLKVAEDWSPGI Trigger: TATCCCTGGAGACCAGTCCTCAGCAACCTTGAGGACCAGAGTTCAAATCTCCAGCAAGCCTGTAACCCAGAACTGTGTTAATAAAGACAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR TCA 90 bp | CTGGCTGAGGACCGATCCTTTGGGTGCCTGGACCTGGCCTTGCCTGAGGTGACACAGAGGCCTGGCTTGTaGGAGGAAGGGCCCAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: LAEDRSFGCLDLALPEVTQRPGL*EEGPRL Trigger: CAGCCTGGGCCCTTCCTCTCACAAGCCAGGCCTCTG...TGTCACCTCAGGCAAGGCCAGGTCCAGGCACCCAAAGGATCGGTCCTCAGCCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR GCA 90 bp | GAAGGGACACAGCTCCAAAGGGACTCCAGGGAAGAGGGACAGTCACACTTGGGGGCACAGGCTGGCTGCTaGCTGCCTCCTCGTGGGGAT | + |
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Preference number: 2 (lower is better) Translates to: EGTQLQRDSREEGQSHLGAQAGC*LPPRGD Trigger: ATCCCCACGAGGAGGCAGGCAGCAGCCAGCCTGTGC...CCCCAAGTGTGACTGTCCCTCTTCCCTGGAGTCCCTTTGGAGCTGTGTCCCTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGCTGACCTGTCAGGGGCTTATGAGAGCCATTGCATAGCTCTGGGAAGAGGAGGGGCACAGGCTGGCTaGTGCCTGCCTCCTCGTGGG | + |
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Preference number: 2 (lower is better) Translates to: AADLSGAYESHCIALGRGGAQAG*CLPPRG Trigger: CCCACGAGGAGGCAGGCAGCAGCCAGCCTGTGCCCC...TCCTCTTCCCAGAGCTATGCAATGGCTCTCATAAGCCCCTGACAGGTCAGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CCA 90 bp | GGACTCCAGGGAAGAGGGACAGTCACACTTGGGGACAAGAGAGATAAGAGCCACAGTGGGGGCACAGGCTaGCTGCTGCCTGCCTCCTCG | + |
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Preference number: 2 (lower is better) Translates to: GLQGRGTVTLGDKRDKSHSGGTG*LLPASS Trigger: CGAGGAGGCAGGCAGCAGCCAGCCTGTGCCCCCACT...GTGGCTCTTATCTCTCTTGTCCCCAAGTGTGACTGTCCCTCTTCCCTGGAGTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGGCCAGCACTTGTTAGCAGCTCTAGGCTGCTGGGCCGTGTGCAAAGGGTACGGAGAGGGGTCCCCCTaGGTTCTCAAGAACATGACA | + |
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Preference number: 2 (lower is better) Translates to: TGQHLLAALGCWAVCKGYGEGSP*VLKNMT Trigger: TGTCATGTTCTTGAGAACCCAGGGGGACCCCTCTCC...GTACCCTTTGCACACGGCCCAGCAGCCTAGAGCTGCTAACAAGTGCTGGCCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGCTGAGGACCGATCCTTTGGGTGCCTGGACCTGGCCTTGCCTGAGGTGACAGACAGGAAGATGAACTaGGCAGGTTATGGCAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: LAEDRSFGCLDLALPEVTDRKMN*AGYGRD Trigger: ATCCCTGCCATAACCTGCCCAGTTCATCTTCCTGTC...TGTCACCTCAGGCAAGGCCAGGTCCAGGCACCCAAAGGATCGGTCCTCAGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CAA 90 bp | AACAGGCGGGGACAGGAAGATGAACTGGGCAGGTTATGGCAGGGATaGGCCAGGAACCTCCACGTTTTGCCCTCTTCCTCCCTAAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: NRRGQEDELGRLWQG*ARNLHVLPSSSLKE Trigger: CTCCTTTAGGGAGGAAGAGGGCAAAACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCTGCCCAGTTCATCTTCCTGTCCCCGCCTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR TCA 90 bp | TCTAGGCTGCTGGGCCGTGTGCAAAGGGTACTAGGACAAGTTGGGGTGCAAATGCCTCACCTCAGGGAGTaGGTGAGCTTGGCTTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: SRLLGRVQRVLGQVGVQMPHLRE*VSLASS Trigger: TGAGGAAGCCAAGCTCACTCACTCCCTGAGGTGAGG...CATTTGCACCCCAACTTGTCCTAGTACCCTTTGCACACGGCCCAGCAGCCTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR GCA 90 bp | GGACTCCAGGGAAGAGGGACAGTCACACTTGGGGACAAGAGAGATAAGAGCCACCGCTGCATCCTCAGCTaGTGTCATGGCCAGCAATGG | + |
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Preference number: 2 (lower is better) Translates to: GLQGRGTVTLGDKRDKSHRCILS*CHGQQW Trigger: CCATTGCTGGCCATGACAGCAGCTGAGGATGCAGCG...GTGGCTCTTATCTCTCTTGTCCCCAAGTGTGACTGTCCCTCTTCCCTGGAGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGGCCAGCACTTGTTAGCAGCTCTAGGCTGCTGGGCCGTGTGCAAAGGGTACTGTACGTGGCAGAGTTaGGAGGAAGGAGAAACACGC | + |
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Preference number: 2 (lower is better) Translates to: TGQHLLAALGCWAVCKGYCTWQS*EEGETR Trigger: GCGTGTTTCTCCTTCCTCCCAACTCTGCCACGTACA...GTACCCTTTGCACACGGCCCAGCAGCCTAGAGCTGCTAACAAGTGCTGGCCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CAA 90 bp | AAGGTGTGTGTACGTGGCAGAGTTGGGAGGAAGGAGAAACACGCCTaGGTAGCTGCACTCCGTCCAACCCTAGGCCGGATCATACAAGTC | + |
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Preference number: 2 (lower is better) Translates to: KVCVRGRVGRKEKHA*VAALRPTLGRIIQV Trigger: GACTTGTATGATCCGGCCTAGGGTTGGACGGAGTGCAGCTACCAAGGCGTGTTTCTCCTTCCTCCCAACTCTGCCACGTACACACACCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CCA 90 bp | CCCTGGCTATCTGTGCTCACATTTTACTTCTGGGCTGGGTCTCATAAAGGTCACAGCACACCCAAGGGCTaGGTCAGCAGCACAGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: PWLSVLTFYFWAGSHKGHSTPKG*VSSTVG Trigger: CCCCACTGTGCTGCTGACCCAGCCCTTGGGTGTGCT...GTGACCTTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCACAGATAGCCAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CAA 90 bp | GAACTGGGCAGGTTATGGCAGGGATTGGCCAGGAACCTCCACGTTTaGCCCTCTTCCTCCCTAAAGGAGACCCCTACAAAGTACTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: ELGRLWQGLARNLHV*PSSSLKETPTKYSE Trigger: CTCTGAGTACTTTGTAGGGGTCTCCTTTAGGGAGGAAGAGGGCAAAACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCTGCCCAGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR GCA 90 bp | CAACAGAGGGCTGATGGCCCTGGGGTTCCTTGTCAAAGGATCCGCCTGTGTCTTGCTAAAGTTCCCTCCTaGTTGCAGCCATGTTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: QQRADGPGVPCQRIRLCLAKVPS*LQPCSQ Trigger: CTGAGAACATGGCTGCAAGCAGGAGGGAACTTTAGC...AAGACACAGGCGGATCCTTTGACAAGGAACCCCAGGGCCATCAGCCCTCTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGCTGACCTGTCAGGGGCTTATGAGAGCCATTGCATAGCTCTGGGAAGAGGAGGTTATGGCAGGGATTaGCCAGGAACCTCCACGTTT | + |
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Preference number: 2 (lower is better) Translates to: AADLSGAYESHCIALGRGGYGRD*PGTSTF Trigger: AAACGTGGAGGTTCCTGGCCAATCCCTGCCATAACC...TCCTCTTCCCAGAGCTATGCAATGGCTCTCATAAGCCCCTGACAGGTCAGCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCCTGTGACCTCACTTATCCTCTGGTTAAGTAACTGGCTCTCTAGAAGGGACCCTCAGCTGCTGTCATaGCCAGCAATGGGCCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: EPVTSLILWLSNWLSRRDPQLLS*PAMGQS Trigger: GCTCTGGCCCATTGCTGGCCATGACAGCAGCTGAGG...GTCCCTTCTAGAGAGCCAGTTACTTAACCAGAGGATAAGTGAGGTCACAGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR TCA 90 bp | CCCTGGCTATCTGTGCTCACATTTTACTTCTGGGCTGGGTCTCATAAAGGTCACAGATCATCTGACAGCTaGGGAGAGAGGACTGGCCTA | + |
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Preference number: 2 (lower is better) Translates to: PWLSVLTFYFWAGSHKGHRSSDS*GERTGL Trigger: TAGGCCAGTCCTCTCTCCTCAGCTGTCAGATGATCT...GTGACCTTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCACAGATAGCCAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR TCA 90 bp | GAGCCTGTGACCTCACTTATCCTCTGGTTAAGTAACTGGCTCTCTAGAAGGGACGGGTTCTCAAGAACATaGCACAGACCCACAGAGACT | + |
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Preference number: 2 (lower is better) Translates to: EPVTSLILWLSNWLSRRDGFSRT*HRPTET Trigger: AGTCTCTGTGGGTCTGTGTCATGTTCTTGAGAACCC...GTCCCTTCTAGAGAGCCAGTTACTTAACCAGAGGATAAGTGAGGTCACAGGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR GCA 90 bp | TCCTTGTCAAAGGATCCGCCTGTGTCTTTATTAACACAGTTCTGGGTTACAGGCCACCCTGGCTATCTGTaGTCACATTTTACTTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: SLSKDPPVSLLTQFWVTGHPGYL*SHFTSG Trigger: CCCAGAAGTAAAATGTGAGCACAGATAGCCAGGGTG...GCCTGTAACCCAGAACTGTGTTAATAAAGACACAGGCGGATCCTTTGACAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR GCA 72 bp | CCAGTGGTCTCCCTGGCTGAGGACCGATCCTTTGGGTaGCTGGACCTGGCCTTGCCTGAGGTGACATGTCAG | + |
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Preference number: 3 (lower is better) Translates to: PVVSLAEDRSFG*LDLALPEVTCQ Trigger: CTGACATGTCACCTCAGGCAAGGCCAGGTCCAGGCACCCAAAGGATCGGTCCTCAGCCAGGGAGACCACTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 72 bp | TGGAGGGAAACCCTATCCCCGCCTCACCTCAGGGAGTaGGTGAGCTTGGCTTCCTCAGCTCCGTGGGGTTCA | + |
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Preference number: 3 (lower is better) Translates to: WRETLSPPHLRE*VSLASSAPWGS Trigger: TGAACCCCACGGAGCTGAGGAAGCCAAGCTCACTCACTCCCTGAGGTGAGGCGGGGATAGGGTTTCCCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 72 bp | GGACCGATCCTTTGGGTGCCTGGACCTGGCCTTGCCTaGGGTGACATGTCAGTCCATCGCTGCATCCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: GPILWVPGPGLA*GDMSVHRCILS Trigger: GCTGAGGATGCAGCGATGGACTGACATGTCACCTCAGGCAAGGCCAGGTCCAGGCACCCAAAGGATCGGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 72 bp | GATCCTTTGGGTGCCTGGACCTGGCCTTGCCTGAGGTaGCATGTCAGTCCATCGCTGCATCCTCAGCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: DPLGAWTWPCLR*HVSPSLHPQLL Trigger: CAGCAGCTGAGGATGCAGCGATGGACTGACATGTCACCTCAGGCAAGGCCAGGTCCAGGCACCCAAAGGATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | TGGGGTATCAGACAGGTCCTTCCCAGGATGGAGGACTaGCCAGCACTTGTTAGCAGCTCTAGGCTGCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: WGIRQVLPRMED*PALVSSSRLLG Trigger: GCCCAGCAGCCTAGAGCTGCTAACAAGTGCTGGCCAGTCCTCCATCCTGGGAAGGACCTGTCTGATACCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | AACAGGCGGGGACAGGAAGATGAACTGGGCAGGTTATaGCAGGGATTGGCCAGGAACCTCCACGTTTTGCCC | + |
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Preference number: 3 (lower is better) Translates to: NRRGQEDELGRL*QGLARNLHVLP Trigger: GGGCAAAACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCTGCCCAGTTCATCTTCCTGTCCCCGCCTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | GCTCACAGTGGGGTATCAGACAGGTCCTTCCCAGGATaGAGGACTGGCCAGCACTTGTTAGCAGCTCTAGGC | + |
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Preference number: 3 (lower is better) Translates to: AHSGVSDRSFPG*RTGQHLLAALG Trigger: GCCTAGAGCTGCTAACAAGTGCTGGCCAGTCCTCCATCCTGGGAAGGACCTGTCTGATACCCCACTGTGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | TATTGCCAGTGTCAGGAGGGATGGGGAATCCGTGGCTaGGGTCTGAGTGGGGAAGTTTCTGACTTGGCGCTG | + |
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Preference number: 3 (lower is better) Translates to: YCQCQEGWGIRG*GLSGEVSDLAL Trigger: CAGCGCCAAGTCAGAAACTTCCCCACTCAGACCCCAGCCACGGATTCCCCATCCCTCCTGACACTGGCAATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CAA 90 bp | CAACAGAGGGCTGATGGCCCTGGGGTTCCTTGTCAAAGGATCCGCCTGTGTCTTAGGTTATGGCAGGGATaGGCCAGGAACCTCCACGTT | + |
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Preference number: 3 (lower is better) Translates to: QQRADGPGVPCQRIRLCLRLWQG*ARNLHV Trigger: AACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCT...AAGACACAGGCGGATCCTTTGACAAGGAACCCCAGGGCCATCAGCCCTCTGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | GCAAGAGGGCGAGAAGGTGTGTGTACGTGGCAGAGTTaGGAGGAAGGAGAAACACGCCTTGGTAGCTGCACT | + |
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Preference number: 3 (lower is better) Translates to: ARGREGVCTWQS*EEGETRLGSCT Trigger: AGTGCAGCTACCAAGGCGTGTTTCTCCTTCCTCCCAACTCTGCCACGTACACACACCTTCTCGCCCTCTTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | GCAGTAAGGAACAGGCTCACAGGAGAGGGGTCCCCCTaGGTTCTCAAGAACATGACACAGACCCACAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: AVRNRLTGEGSP*VLKNMTQTHRD Trigger: GTCTCTGTGGGTCTGTGTCATGTTCTTGAGAACCCAGGGGGACCCCTCTCCTGTGAGCCTGTTCCTTACTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | GGGGTGCAAATGCCCCAAATGACTACCCTGTGGTCCTaGAATGCCTACAAGGCTACCTCGCAACCACTGACC | + |
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Preference number: 3 (lower is better) Translates to: GVQMPQMTTLWS*NAYKATSQPLT Trigger: GGTCAGTGGTTGCGAGGTAGCCTTGTAGGCATTCCAGGACCACAGGGTAGTCATTTGGGGCATTTGCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | GCTGCTGGGCCGTGTGCAAAGGGTACTAGGACAAGTTaGGGTGCAAATGCCCCAAATGACTACCCTGTGGTC | + |
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Preference number: 3 (lower is better) Translates to: AAGPCAKGTRTS*GANAPNDYPVV Trigger: GACCACAGGGTAGTCATTTGGGGCATTTGCACCCCAACTTGTCCTAGTACCCTTTGCACACGGCCCAGCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR GCA 72 bp | GCCTACATAACAGGAGTGCTAAAGTTCCCTCCTGCTTaGAGCCATGTTCTCAGGGCACCAAACAGGCGGGGA | + |
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Preference number: 3 (lower is better) Translates to: AYITGVLKFPPA*SHVLRAPNRRG Trigger: TCCCCGCCTGTTTGGTGCCCTGAGAACATGGCTGCAAGCAGGAGGGAACTTTAGCACTCCTGTTATGTAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR GCA 72 bp | GCAAATGCCCCAAATGACTACCCTGTGGTCCTGGAATaGCTACAAGGCTACCTCGCAACCACTGACCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: ANAPNDYPVVLE*LQGYLATTDPF Trigger: GAAGGGGTCAGTGGTTGCGAGGTAGCCTTGTAGGCATTCCAGGACCACAGGGTAGTCATTTGGGGCATTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | TCCCTAAAGGAGACCCCTACAAAGTACTCAGAGGCCTaGCTTGTGAGAGGAAGGGCCCAGGCTGTGGTACAT | + |
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Preference number: 3 (lower is better) Translates to: SLKETPTKYSEA*LVRGRAQAVVH Trigger: ATGTACCACAGCCTGGGCCCTTCCTCTCACAAGCCAGGCCTCTGAGTACTTTGTAGGGGTCTCCTTTAGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR GCA 72 bp | ACTGGCCTACATAACAGGAGTGCTAAAGTTCCCTCCTaGTTGCAGCCATGTTCTCAGGGCACCAAACAGGCG | + |
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Preference number: 3 (lower is better) Translates to: TGLHNRSAKVPS*LQPCSQGTKQA Trigger: CGCCTGTTTGGTGCCCTGAGAACATGGCTGCAAGCAGGAGGGAACTTTAGCACTCCTGTTATGTAGGCCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | ACCCTAGGCCGGATCATACAAGTCACGGGTCACAGGTaGAAGCACACATTCACAGCCACAAGCACAGACAGA | + |
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Preference number: 3 (lower is better) Translates to: TLGRIIQVTGHR*KHTFTATSTDR Trigger: TCTGTCTGTGCTTGTGGCTGTGAATGTGTGCTTCCACCTGTGACCCGTGACTTGTATGATCCGGCCTAGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | TACAAGGCTACCTCGCAACCACTGACCCCTTCACCCTaGCTATCTGTGCTCACATTTTACTTCTGGGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: YKATSQPLTPSP*LSVLTFYFWAG Trigger: CCCAGCCCAGAAGTAAAATGTGAGCACAGATAGCCAGGGTGAAGGGGTCAGTGGTTGCGAGGTAGCCTTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | CAAGTTGGGGTGCAAATGCCCCAAATGACTACCCTGTaGTCCTGGAATGCCTACAAGGCTACCTCGCAACCA | + |
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Preference number: 3 (lower is better) Translates to: QVGVQMPQMTTL*SWNAYKATSQP Trigger: TGGTTGCGAGGTAGCCTTGTAGGCATTCCAGGACCACAGGGTAGTCATTTGGGGCATTTGCACCCCAACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTCACATTTTACTTCTGGGCTGGGTCTCATAAAGGTCACTATTGTGCCAGGCTGCCTGGACCTGGCCTaGCCTGAGGTGACATGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: CSHFTSGLGLIKVTIVPGCLDLA*PEVTCQ Trigger: CTGACATGTCACCTCAGGCAAGGCCAGGTCCAGGCA...GCCTGGCACAATAGTGACCTTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | CAGGCCCTTCCTGAGCCTGTGACCTCACTTATCCTCTaGTTAAGTAACTGGCTCTCTAGAAGGGACACAGCT | + |
|
Preference number: 3 (lower is better) Translates to: QALPEPVTSLIL*LSNWLSRRDTA Trigger: AGCTGTGTCCCTTCTAGAGAGCCAGTTACTTAACCAGAGGATAAGTGAGGTCACAGGCTCAGGAAGGGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | AGTTCTGGGTTACAGGCTTGCTGGAGATTTGAACTCTaGTCCTCAAGGTTGCTGAGGACTGGTCTCCAGGGA | + |
|
Preference number: 3 (lower is better) Translates to: SSGLQACWRFEL*SSRLLRTGLQG Trigger: TCCCTGGAGACCAGTCCTCAGCAACCTTGAGGACCAGAGTTCAAATCTCCAGCAAGCCTGTAACCCAGAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CAA 90 bp | GAGCCTGTGACCTCACTTATCCTCTGGTTAAGTAACTGGCTCTCTAGAAGGGACAAAGTTCCCTCCTGCTaGCAGCCATGTTCTCAGGGC | + |
|
Preference number: 3 (lower is better) Translates to: EPVTSLILWLSNWLSRRDKVPSC*QPCSQG Trigger: GCCCTGAGAACATGGCTGCAAGCAGGAGGGAACTTT...GTCCCTTCTAGAGAGCCAGTTACTTAACCAGAGGATAAGTGAGGTCACAGGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR TCA 72 bp | TCACAGGAGAGGGGTCCCCCTGGGTTCTCAAGAACATaGCACAGACCCACAGAGACTCAGTGTATAGATAGT | + |
|
Preference number: 3 (lower is better) Translates to: SQERGPPGFSRT*HRPTETQCIDS Trigger: ACTATCTATACACTGAGTCTCTGTGGGTCTGTGTCATGTTCTTGAGAACCCAGGGGGACCCCTCTCCTGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | GAGCCTGTGACCTCACTTATCCTCTGGTTAAGTAACTaGCTCTCTAGAAGGGACACAGCTCCAAAGGGACTC | + |
|
Preference number: 3 (lower is better) Translates to: EPVTSLILWLSN*LSRRDTAPKGL Trigger: GAGTCCCTTTGGAGCTGTGTCCCTTCTAGAGAGCCAGTTACTTAACCAGAGGATAAGTGAGGTCACAGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CCA 72 bp | CCTTCACCCTGGCTATCTGTGCTCACATTTTACTTCTaGGCTGGGTCTCATAAAGGTCACTATTGTGCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: PSPWLSVLTFYF*AGSHKGHYCAR Trigger: CCTGGCACAATAGTGACCTTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCACAGATAGCCAGGGTGAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR-3UTR CAA 90 bp | TGCTCACATTTTACTTCTGGGCTGGGTCTCATAAAGGTCACTATTGTGCCAGGCGAGGGACAGTCACACTaGGGGACAAGAGAGATAAGA | + |
|
Preference number: 3 (lower is better) Translates to: CSHFTSGLGLIKVTIVPGEGQSH*GTREIR Trigger: TCTTATCTCTCTTGTCCCCAAGTGTGACTGTCCCTC...GCCTGGCACAATAGTGACCTTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR CCA 90 bp | TGGGAGGGGCAAAGCCAGTGGTCTCCCTGGCTGAGGACCGATCCTTTGGGTGCCGTGTGGGGAGCCAACTaGGTGAGCACCACCTCCACA | + |
|
Preference number: 4 (lower is better) Translates to: WEGQSQWSPWLRTDPLGAVWGAN*VSTTST Trigger: TGTGGAGGTGGTGCTCACCCAGTTGGCTCCCCACAC...GGCACCCAAAGGATCGGTCCTCAGCCAGGGAGACCACTGGCTTTGCCCCTCCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR TCA 90 bp | AACAGGCTCACAGGAGAGGGGTCCCCCTGGGTTCTCAAGAACATGACACAGACCGCTTACAGACGCCCTTaGACACGGGGCCGGCCGAGG | + |
|
Preference number: 4 (lower is better) Translates to: NRLTGEGSPWVLKNMTQTAYRRP*TRGRPR Trigger: CCTCGGCCGGCCCCGTGTTCAAGGGCGTCTGTAAGC...GGTCTGTGTCATGTTCTTGAGAACCCAGGGGGACCCCTCTCCTGTGAGCCTGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR GCA 90 bp | ACCCAGGTCCAGCACAGGAGACAGGAACACAAGCAGACAGGCCTGGGTACCGGAGTTCCCAGATCCTACTaGCCTCCCTGTGGAAGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: TQVQHRRQEHKQTGLGTGVPRSY*PPCGRG Trigger: TCCCCTTCCACAGGGAGGGCAGTAGGATCTGGGAAC...TCCGGTACCCAGGCCTGTCTGCTTGTGTTCCTGTCTCCTGTGCTGGACCTGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CAA 72 bp | GACAGGTCCTTCCCAGGATGGAGGACTGGCCAGCACTaGTTAGCAGCTCTAGGCTGCTGGGCCGTGTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: DRSFPGWRTGQH*LAALGCWAVCK Trigger: TTTGCACACGGCCCAGCAGCCTAGAGCTGCTAACAAGTGCTGGCCAGTCCTCCATCCTGGGAAGGACCTGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR CCA 90 bp | CAGTGGGGTATCAGACAGGTCCTTCCCAGGATGGAGGACTGGCCAGCACTTGTTTGTGGAAGGGGAACGTaGGCCAGACGGGGGATTTGG | + |
|
Preference number: 4 (lower is better) Translates to: QWGIRQVLPRMEDWPALVCGRGT*ARRGIW Trigger: CCAAATCCCCCGTCTGGCCCACGTTCCCCTTCCACA...AACAAGTGCTGGCCAGTCCTCCATCCTGGGAAGGACCTGTCTGATACCCCACTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR CCA 90 bp | GAAGGGACACAGCTCCAAAGGGACTCCAGGGAAGAGGGACAGTCACACTTGGGGATGAAGCCGTGGCCCTaGGAGCGGGAGAACTGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: EGTQLQRDSREEGQSHLGMKPWP*ERENCL Trigger: TAAGCAGTTCTCCCGCTCCCAGGGCCACGGCTTCAT...CCCCAAGTGTGACTGTCCCTCTTCCCTGGAGTCCCTTTGGAGCTGTGTCCCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CAA 72 bp | GGACAGGAAGATGAACTGGGCAGGTTATGGCAGGGATaGGCCAGGAACCTCCACGTTTTGCCCTCTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GQEDELGRLWQG*ARNLHVLPSSS Trigger: GGAGGAAGAGGGCAAAACGTGGAGGTTCCTGGCCAATCCCTGCCATAACCTGCCCAGTTCATCTTCCTGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CAA 72 bp | GGCCTACATAACAGGAGTGCTAAAGTTCCCTCCTGCTaGCAGCCATGTTCTCAGGGCACCAAACAGGCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: GLHNRSAKVPSC*QPCSQGTKQAG Trigger: CCCCGCCTGTTTGGTGCCCTGAGAACATGGCTGCAAGCAGGAGGGAACTTTAGCACTCCTGTTATGTAGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR CCA 90 bp | TGCTCACATTTTACTTCTGGGCTGGGTCTCATAAAGGTCACTATTGTGCCAGGCGGCGTGATGAAGCCGTaGCCCTGGGAGCGGGAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: CSHFTSGLGLIKVTIVPGGVMKP*PWEREN Trigger: GTTCTCCCGCTCCCAGGGCCACGGCTTCATCACGCC...GCCTGGCACAATAGTGACCTTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| 3UTR CAA 72 bp | CTCCAAAGGGACTCCAGGGAAGAGGGACAGTCACACTaGGGGACAAGAGAGATAAGAGCCACCTCAGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: LQRDSREEGQSH*GTREIRATSAA Trigger: AGCAGCTGAGGTGGCTCTTATCTCTCTTGTCCCCAAGTGTGACTGTCCCTCTTCCCTGGAGTCCCTTTGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR GCA 90 bp | ACAGGAGACAGGAACACAAGCAGACAGGCCTGGGTACCGGAGACAGCAGTAAGGTCGATGTCAGAAACATaGACGAAGATGTCCTCGGAG | + |
|
Preference number: 4 (lower is better) Translates to: TGDRNTSRQAWVPETAVRSMSET*TKMSSE Trigger: CTCCGAGGACATCTTCGTGCATGTTTCTGACATCGA...CCTTACTGCTGTCTCCGGTACCCAGGCCTGTCTGCTTGTGTTCCTGTCTCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR GCA 90 bp | CCCTGGCTATCTGTGCTCACATTTTACTTCTGGGCTGGGTCTCATAAAGGTCACTGGGAGCGGGAGAACTaGTTACAGACGCCCTTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: PWLSVLTFYFWAGSHKGHWEREN*LQTPLN Trigger: GTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCA...GTGACCTTTATGAGACCCAGCCCAGAAGTAAAATGTGAGCACAGATAGCCAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS GCA 90 bp | CCATTCTCAGGCGTGATGAAGCCGTGGCCCTGGGAGCGGGAGAACTaGTTACAGACGCCCTTGAACACGGGGCCGGCCGAGGCTCGAGCT | + |
|
Preference number: 5 (lower is better) Translates to: PFSGVMKPWPWEREN*LQTPLNTGPAEARA Trigger: AGCTCGAGCCTCGGCCGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCCACGGCTTCATCACGCCTGAGAATGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS GCA 90 bp | GCAGGTCCCGAGGAGCAATGCCACCACCACGTTCCCAGATCCTACTaGCCTCCCTGTGGAAGGGGAACGTGGGCCAGACGGGGGATTTGG | + |
|
Preference number: 5 (lower is better) Translates to: AGPEEQCHHHVPRSY*PPCGRGTWARRGIW Trigger: CCAAATCCCCCGTCTGGCCCACGTTCCCCTTCCACAGGGAGGGCAGTAGGATCTGGGAACGTGGTGGTGGCATTGCTCCTCGGGACCTGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR CAA 90 bp | TGGGAGGGGCAAAGCCAGTGGTCTCCCTGGCTGAGGACCGATCCTTTGGGTGCCTATGTCCTGGTCCGCTaGGTAGGCAGAGGGCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: WEGQSQWSPWLRTDPLGAYVLVR*VGRGLG Trigger: GCCCAGCCCTCTGCCTACCAAGCGGACCAGGACATA...GGCACCCAAAGGATCGGTCCTCAGCCAGGGAGACCACTGGCTTTGCCCCTCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS CCA 90 bp | AAGATGTCCTCGGAGCCATTCTCAGGCGTGATGAAGCCGTGGCCCTaGGAGCGGGAGAACTGCTTACAGACGCCCTTGAACACGGGGCCG | + |
|
Preference number: 5 (lower is better) Translates to: KMSSEPFSGVMKPWP*ERENCLQTPLNTGP Trigger: CGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCCACGGCTTCATCACGCCTGAGAATGGCTCCGAGGACATCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS-3UTR CAA 90 bp | GAAGGGACACAGCTCCAAAGGGACTCCAGGGAAGAGGGACAGTCACACTTGGGGTGCTTACAGACGCCCTaGAACACGGGGCCGGCCGAG | + |
|
Preference number: 5 (lower is better) Translates to: EGTQLQRDSREEGQSHLGCLQTP*NTGPAE Trigger: CTCGGCCGGCCCCGTGTTCAAGGGCGTCTGTAAGCA...CCCCAAGTGTGACTGTCCCTCTTCCCTGGAGTCCCTTTGGAGCTGTGTCCCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS CCA 90 bp | TGCACGAAGATGTCCTCGGAGCCATTCTCAGGCGTGATGAAGCCGTaGCCCTGGGAGCGGGAGAACTGCTTACAGACGCCCTTGAACACG | + |
|
Preference number: 5 (lower is better) Translates to: CTKMSSEPFSGVMKP*PWERENCLQTPLNT Trigger: CGTGTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCCACGGCTTCATCACGCCTGAGAATGGCTCCGAGGACATCTTCGTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS TCA 72 bp | GGCCCTGGGAGCGGGAGAACTGCTTACAGACGCCCTTaGACACGGGGCCGGCCGAGGCTCGAGCTGTCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: GPGSGRTAYRRP*TRGRPRLELSL Trigger: CAGCGACAGCTCGAGCCTCGGCCGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS GCA 72 bp | GGCGTGATGAAGCCGTGGCCCTGGGAGCGGGAGAACTaGTTACAGACGCCCTTGAACACGGGGCCGGCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: GVMKPWPWEREN*LQTPLNTGPAE Trigger: CTCGGCCGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCCACGGCTTCATCACGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS CAA 72 bp | TGGCCCTGGGAGCGGGAGAACTGCTTACAGACGCCCTaGAACACGGGGCCGGCCGAGGCTCGAGCTGTCGCT | + |
|
Preference number: 6 (lower is better) Translates to: WPWERENCLQTP*NTGPAEARAVA Trigger: AGCGACAGCTCGAGCCTCGGCCGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS CAA 90 bp | ATGAAGCCGTGGCCCTGGGAGCGGGAGAACTGCTTACAGACGCCCTaGAACACGGGGCCGGCCGAGGCTCGAGCTGTCGCTGAGTATGTC | + |
|
Preference number: 6 (lower is better) Translates to: MKPWPWERENCLQTP*NTGPAEARAVAEYV Trigger: GACATACTCAGCGACAGCTCGAGCCTCGGCCGGCCCCGTGTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCCACGGCTTCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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| CDS GCA 72 bp | GAGGAGCAATGCCACCACCACGTTCCCAGATCCTACTaGCCTCCCTGTGGAAGGGGAACGTGGGCCAGACGG | + |
|
Preference number: 6 (lower is better) Translates to: EEQCHHHVPRSY*PPCGRGTWARR Trigger: CCGTCTGGCCCACGTTCCCCTTCCACAGGGAGGGCAGTAGGATCTGGGAACGTGGTGGTGGCATTGCTCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038757.8 ENSMUST00000140209.2 |
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| CDS CCA 72 bp | TCGGAGCCATTCTCAGGCGTGATGAAGCCGTGGCCCTaGGAGCGGGAGAACTGCTTACAGACGCCCTTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: SEPFSGVMKPWP*ERENCLQTPLN Trigger: GTTCAAGGGCGTCTGTAAGCAGTTCTCCCGCTCCCAGGGCCACGGCTTCATCACGCCTGAGAATGGCTCCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038757.8 |
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