Pregenerated sensors for CS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005683Ensembl transcript IDs: ENSMUST00000005826.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGCTAGAACCCCTGGGACCAGGCCCGAAGAGGCTGGTCATTCCTaGGCCCTTGTTCCGTGCCAGAGCATATTAACAGGAGAAACCAAG | + |
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Preference number: 1 (lower is better) Translates to: KARTPGTRPEEAGHS*ALVPCQSILTGETK Trigger: CTTGGTTTCTCCTGTTAATATGCTCTGGCACGGAACAAGGGCTCAGGAATGACCAGCCTCTTCGGGCCTGGTCCCAGGGGTTCTAGCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR TCA 90 bp | TTAAGGGAAGAGCAAAAGACACTGATAAATAAAGGACCGTTTCCTTaGCACGGGATGAGAAGAAGGCCCCAAGCCCTAGGTCCATCCATC | + |
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Preference number: 1 (lower is better) Translates to: LREEQKTLINKGPFP*HGMRRRPQALGPSI Trigger: GATGGATGGACCTAGGGCTTGGGGCCTTCTTCTCATCCCGTGTCAAGGAAACGGTCCTTTATTTATCAGTGTCTTTTGCTCTTCCCTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR CAA 90 bp | GACCCTAGTGGAGTTCAGGACAGGGAGACCCCCAGCATCCTCAGCTaGAGGCACAGCAGGTATAGAGGCCTGGAAGGAAACATAACTCCC | + |
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Preference number: 2 (lower is better) Translates to: DPSGVQDRETPSILS*RHSRYRGLEGNITP Trigger: GGGAGTTATGTTTCCTTCCAGGCCTCTATACCTGCTGTGCCTCAAGCTGAGGATGCTGGGGGTCTCCCTGTCCTGAACTCCACTAGGGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR-3UTR TCA 90 bp | GCTATGGGCTCTTACTTAAGGGAAGAGCAAAAGACACTGATAAATAAAGGACCGAGAAACAAAGCTCCATaGGTGACTGCAGCTTGTCTG | + |
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Preference number: 2 (lower is better) Translates to: AMGSYLREEQKTLINKGPRNKAP*VTAACL Trigger: CAGACAAGCTGCAGTCACTCATGGAGCTTTGTTTCT...CGGTCCTTTATTTATCAGTGTCTTTTGCTCTTCCCTTAAGTAAGAGCCCATAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR-3UTR TCA 90 bp | GTGCCAGAGCATATTAACAGGAGAAACCAAGGTCAGAAGATAGTGGCTTATGTTAGCTGGCATCCAACATaGTTTCTATGGAAAGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: VPEHINRRNQGQKIVAYVSWHPT*FLWKER Trigger: CCTTTCTTTCCATAGAAATCATGTTGGATGCCAGCT...AACATAAGCCACTATCTTCTGACCTTGGTTTCTCCTGTTAATATGCTCTGGCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR TCA 72 bp | GAGTTCAGGACAGGGAGACCCCCAGCATCCTCAGCTTaGGGCACAGCAGGTATAGAGGCCTGGAAGGAAACA | + |
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Preference number: 3 (lower is better) Translates to: EFRTGRPPASSA*GTAGIEAWKET Trigger: TGTTTCCTTCCAGGCCTCTATACCTGCTGTGCCTCAAGCTGAGGATGCTGGGGGTCTCCCTGTCCTGAACTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR TCA 72 bp | TTCTATGGAAAGAAAGGGGCCTGTCCCTGGCGTAGATaGCTTGGGGGTGGCAGCATAGAAACAAAGCTCCAT | + |
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Preference number: 3 (lower is better) Translates to: FYGKKGACPWRR*LGGGSIETKLH Trigger: ATGGAGCTTTGTTTCTATGCTGCCACCCCCAAGTCATCTACGCCAGGGACAGGCCCCTTTCTTTCCATAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR GCA 72 bp | CAAAGCTCCATGAGTGACTGCAGCTTGTCTGTAACCTaGTCTGACCTAAAGAGGAGGAGCCTGAGTCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: QSSMSDCSLSVT*SDLKRRSLSLA Trigger: AGCAAGACTCAGGCTCCTCCTCTTTAGGTCAGAGCAGGTTACAGACAAGCTGCAGTCACTCATGGAGCTTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR TCA 72 bp | GAGCAAAAGACACTGATAAATAAAGGACCGTTTCCTTaGCACGGGATGAGAAGAAGGCCCCAAGCCCTAGGT | + |
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Preference number: 3 (lower is better) Translates to: EQKTLINKGPFP*HGMRRRPQALG Trigger: ACCTAGGGCTTGGGGCCTTCTTCTCATCCCGTGTCAAGGAAACGGTCCTTTATTTATCAGTGTCTTTTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR-3UTR CAA 90 bp | GTGCCAGAGCATATTAACAGGAGAAACCAAGGTCAGAAGATAGTGGCTTATGTTATGAGTGACTGCAGCTaGTCTGTAACCTGCTCTGAC | + |
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Preference number: 3 (lower is better) Translates to: VPEHINRRNQGQKIVAYVMSDCS*SVTCSD Trigger: GTCAGAGCAGGTTACAGACAAGCTGCAGTCACTCAT...AACATAAGCCACTATCTTCTGACCTTGGTTTCTCCTGTTAATATGCTCTGGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR-3UTR CAA 90 bp | GTGCCAGAGCATATTAACAGGAGAAACCAAGGTCAGAAGATAGTGGCTTATGTTAGGTGTTTGTGTACATaGGGAAAGGCCCTAGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: VPEHINRRNQGQKIVAYVRCLCT*GKALVL Trigger: CAACACTAGGGCCTTTCCCAATGTACACAAACACCT...AACATAAGCCACTATCTTCTGACCTTGGTTTCTCCTGTTAATATGCTCTGGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| 3UTR-3UTR CAA 90 bp | GTGCCAGAGCATATTAACAGGAGAAACCAAGGTCAGAAGATAGTGGCTTATGTTGCTAACCAAGAGATCTaGCTAGGTAGGAGGTGTTTG | + |
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Preference number: 3 (lower is better) Translates to: VPEHINRRNQGQKIVAYVANQEI*LGRRCL Trigger: CAAACACCTCCTACCTAGCAAGATCTCTTGGTTAGC...AACATAAGCCACTATCTTCTGACCTTGGTTTCTCCTGTTAATATGCTCTGGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| CDS-3UTR CCA 90 bp | TCTAACCCTGACCACATGCTTCAGTCCCGGTCATCCTACAGCTGCTGGGCAGCTTCGTGGAAGAAGCACTaGCATGCCGGGCAGCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: SNPDHMLQSRSSYSCWAASWKKH*HAGQQG Trigger: TCCTTGCTGCCCGGCATGCCAGTGCTTCTTCCACGA...AGCTGCCCAGCAGCTGTAGGATGACCGGGACTGAAGCATGTGGTCAGGGTTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| CDS-3UTR TCA 90 bp | GTGCCAGAGCATATTAACAGGAGAAACCAAGGTCAGAAGATAGTGGCTTATGTTGGGCTCTGCTCCAGATaGGCTGGGCTAGCACACCCA | + |
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Preference number: 4 (lower is better) Translates to: VPEHINRRNQGQKIVAYVGLCSR*AGLAHP Trigger: TGGGTGTGCTAGCCCAGCTCATCTGGAGCAGAGCCC...AACATAAGCCACTATCTTCTGACCTTGGTTTCTCCTGTTAATATGCTCTGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| CDS-3UTR CCA 90 bp | GTGCCAGAGCATATTAACAGGAGAAACCAAGGTCAGAAGATAGTGGCTTATGTTACATTACCACCCTCATaGTCACTATGGATGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: VPEHINRRNQGQKIVAYVTLPPS*SLWMVR Trigger: CCTCACCATCCATAGTGACCATGAGGGTGGTAATGT...AACATAAGCCACTATCTTCTGACCTTGGTTTCTCCTGTTAATATGCTCTGGCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| CDS-3UTR CAA 90 bp | TCTAACCCTGACCACATGCTTCAGTCCCGGTCATCCTACAGCTGCTGGGCAGCTAGGCAGGATGAGTTCTaGGCTCCCAAGAGCCGGGTT | + |
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Preference number: 5 (lower is better) Translates to: SNPDHMLQSRSSYSCWAARQDEF*APKSRV Trigger: AACCCGGCTCTTGGGAGCCAAGAACTCATCCTGCCT...AGCTGCCCAGCAGCTGTAGGATGACCGGGACTGAAGCATGTGGTCAGGGTTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| CDS-3UTR CAA 90 bp | TCTAACCCTGACCACATGCTTCAGTCCCGGTCATCCTACAGCTGCTGGGCAGCTCAAGCACCTCCTGATTaGCTAGTCCATGTAGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: SNPDHMLQSRSSYSCWAAQAPPD*LVHVEA Trigger: GGCCTCTACATGGACTAGCAAATCAGGAGGTGCTTG...AGCTGCCCAGCAGCTGTAGGATGACCGGGACTGAAGCATGTGGTCAGGGTTAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| CDS-3UTR CAA 90 bp | GTGCCAGAGCATATTAACAGGAGAAACCAAGGTCAGAAGATAGTGGCTTATGTTGACATAGGGTGCAGATaGGTTGGAAAATTGTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: VPEHINRRNQGQKIVAYVDIGCR*VGKLSS Trigger: GCTGGACAATTTTCCAACCAATCTGCACCCTATGTC...AACATAAGCCACTATCTTCTGACCTTGGTTTCTCCTGTTAATATGCTCTGGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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| CDS TCA 72 bp | GCCTTTCCAGGGGGAAGCCTAGGGCTCTGCTCCAGATaGGCTGGGCTAGCACACCCAGTGCCCGAGACACTC | + |
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Preference number: 6 (lower is better) Translates to: AFPGGSLGLCSR*AGLAHPVPETL Trigger: GAGTGTCTCGGGCACTGGGTGTGCTAGCCCAGCTCATCTGGAGCAGAGCCCTAGGCTTCCCCCTGGAAAGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005826.9 |
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