Pregenerated sensors for CRYGS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033501Ensembl transcript IDs: ENSMUST00000040592.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AGTTCAGCCCTCAAGTTCAGCCCTCAGGGAGAACTCTATGGTCCCACTCCAGGCATGCGGCGGAACGACTaGATAGCGGGGGATGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: SSALKFSPQGELYGPTPGMRRND*IAGDAA Trigger: TGCGGCATCCCCCGCTATCCAGTCGTTCCGCCGCAT...GCCTGGAGTGGGACCATAGAGTTCTCCCTGAGGGCTGAACTTGAGGGCTGAACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR CCA 90 bp | AGTTCAGCCCTCAAGTTCAGCCCTCAGGGAGAACTCTATGGTCCCACTCCAGGCAAGGACAGTCTTCCGTaGTTTCGTACATCTGACCGT | + |
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Preference number: 4 (lower is better) Translates to: SSALKFSPQGELYGPTPGKDSLP*FRTSDR Trigger: ACGGTCAGATGTACGAAACCACGGAAGACTGTCCTT...GCCTGGAGTGGGACCATAGAGTTCTCCCTGAGGGCTGAACTTGAGGGCTGAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR CCA 90 bp | GCAGAGTTCAGCCCTCAAGTTCAGCCCTCAGGGAGAACTCTATGGTCCCACTCCGTCTGCCACGGTAGTTaGGTAGCTCATAGAAAATCC | + |
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Preference number: 4 (lower is better) Translates to: AEFSPQVQPSGRTLWSHSVCHGS*VAHRKS Trigger: GGATTTTCTATGAGCTACCCAACTACCGTGGCAGAC...GGAGTGGGACCATAGAGTTCTCCCTGAGGGCTGAACTTGAGGGCTGAACTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR TCA 90 bp | TTGTCTATTTGGACCACAAGCCAGACAGCAGAGTTCAGCCCTCAAGTTCAGCCCCCCTTTTCAAAGACCTaGATCTTAGCCTGGCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: LSIWTTSQTAEFSPQVQPPFSKT*ILAWPP Trigger: CGGAGGCCAGGCTAAGATTCAGGTCTTTGAAAAGGG...GGGCTGAACTTGAGGGCTGAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAA 52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR CCA 90 bp | TTACGTTGTCTATTTGGACCACAAGCCAGACAGCAGAGTTCAGCCCTCAAGTTCTCAGGGTACTCGCCCTaGGGTAAGATGTACATGTGC | + |
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Preference number: 4 (lower is better) Translates to: LRCLFGPQARQQSSALKFSGYSP*GKMYMC Trigger: GCACATGTACATCTTACCCCAGGGCGAGTACCCTGA...GAACTTGAGGGCTGAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAACGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR TCA 90 bp | GCTTTTATTTACGTTGTCTATTTGGACCACAAGCCAGACAGCAGAGTTCAGCCCCGTACATCTGACCGTTaGAGTCGCCCTTTTCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: AFIYVVYLDHKPDSRVQPRTSDR*SRPFQR Trigger: TCTTTGAAAAGGGCGACTTCAACGGTCAGATGTACG...GGGCTGAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAACGTAAATAAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR GCA 90 bp | CCAATGCTTTTATTTACGTTGTCTATTTGGACCACAAGCCAGACAGCAGAGTTCGGTAAGATGTACATGTaGCCGGAGAAGTTGGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: PMLLFTLSIWTTSQTAEFGKMYM*PEKLGL Trigger: AAGGCCCAACTTCTCCGGGCACATGTACATCTTACC...GAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAACGTAAATAAAAGCATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR GCA 90 bp | CCAATGCTTTTATTTACGTTGTCTATTTGGACCACAAGCCAGACAGCAGAGTTCCCAGAAGATACTGTCTaGCACGGTAGTTGGGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: PMLLFTLSIWTTSQTAEFPEDTV*HGSWVA Trigger: AGCTACCCAACTACCGTGGCAGACAGTATCTTCTGG...GAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAACGTAAATAAAAGCATTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| 3UTR CAA 72 bp | GGGATGCATTCCAATGCTTTTATTTACGTTGTCTATTaGGACCACAAGCCAGACAGCAGAGTTCAGCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: GMHSNAFIYVVY*DHKPDSRVQPS Trigger: TGAGGGCTGAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAACGTAAATAAAAGCATTGGAATGCATCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR GCA 90 bp | CCAATGCTTTTATTTACGTTGTCTATTTGGACCACAAGCCAGACAGCAGAGTTCCATAGAAAATCCAGGTaGCTTCTACCACCTTACAGG | + |
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Preference number: 4 (lower is better) Translates to: PMLLFTLSIWTTSQTAEFHRKSR*LLPPYR Trigger: CCTGTAAGGTGGTAGAAGGCACCTGGATTTTCTATG...GAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAACGTAAATAAAAGCATTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS GCA 90 bp | CAACGCTGGTATTCAGGGTACTCGCCCTGGGGTAAGATGTACATGTaGCCGGAGAAGTTGGGCCTTTCATACACAGCCCAGGTGCCTCCC | + |
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Preference number: 5 (lower is better) Translates to: QRWYSGYSPWGKMYM*PEKLGLSYTAQVPP Trigger: GGGAGGCACCTGGGCTGTGTATGAAAGGCCCAACTTCTCCGGGCACATGTACATCTTACCCCAGGGCGAGTACCCTGAATACCAGCGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR CAA 90 bp | TTGTCTATTTGGACCACAAGCCAGACAGCAGAGTTCAGCCCTCAAGTTCAGCCCATGTGCCCGGAGAAGTaGGGCCTTTCATACACAGCC | + |
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Preference number: 5 (lower is better) Translates to: LSIWTTSQTAEFSPQVQPMCPEK*GLSYTA Trigger: GGCTGTGTATGAAAGGCCCAACTTCTCCGGGCACAT...GGGCTGAACTTGAGGGCTGAACTCTGCTGTCTGGCTTGTGGTCCAAATAGACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS-3UTR CAA 90 bp | CTATTTGGACCACAAGCCAGACAGCAGAGTTCAGCCCTCAAGTTCAGCCCTCAGTCTACTCTAATGGAGTaGCAGCGACTTAGGTACGAG | + |
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Preference number: 5 (lower is better) Translates to: LFGPQARQQSSALKFSPQSTLME*QRLRYE Trigger: CTCGTACCTAAGTCGCTGCAACTCCATTAGAGTAGA...CTGAGGGCTGAACTTGAGGGCTGAACTCTGCTGTCTGGCTTGTGGTCCAAATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS GCA 90 bp | AATCGACGGGCTTCCGGTACTCCTTCTTATCCAGAAGATACTGTCTaGCACGGTAGTTGGGTAGCTCATAGAAAATCCAGGTGCCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: NRRASGTPSYPEDTV*HGSWVAHRKSRCLL Trigger: TAGAAGGCACCTGGATTTTCTATGAGCTACCCAACTACCGTGGCAGACAGTATCTTCTGGATAAGAAGGAGTACCGGAAGCCCGTCGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS CCA 90 bp | TCCGGTACTCCTTCTTATCCAGAAGATACTGTCTGCCACGGTAGTTaGGTAGCTCATAGAAAATCCAGGTGCCTTCTACCACCTTACAGG | + |
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Preference number: 5 (lower is better) Translates to: SGTPSYPEDTVCHGS*VAHRKSRCLLPPYR Trigger: CCTGTAAGGTGGTAGAAGGCACCTGGATTTTCTATGAGCTACCCAACTACCGTGGCAGACAGTATCTTCTGGATAAGAAGGAGTACCGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS GCA 90 bp | GATACTGTCTGCCACGGTAGTTGGGTAGCTCATAGAAAATCCAGGTaGCTTCTACCACCTTACAGGAATGAATCTCTCGCAGGTGAAACT | + |
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Preference number: 5 (lower is better) Translates to: DTVCHGSWVAHRKSR*LLPPYRNESLAGET Trigger: AGTTTCACCTGCGAGAGATTCATTCCTGTAAGGTGGTAGAAGGCACCTGGATTTTCTATGAGCTACCCAACTACCGTGGCAGACAGTATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS GCA 72 bp | CTCCACAATGCGGCGGAACGACTGGATAGCGGGGGATaGCGCACCCCAATCGACGGGCTTCCGGTACTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LHNAAERLDSGG*RTPIDGLPVLL Trigger: AAGGAGTACCGGAAGCCCGTCGATTGGGGTGCGGCATCCCCCGCTATCCAGTCGTTCCGCCGCATTGTGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS CAA 90 bp | GGCCTTTCATACACAGCCCAGGTGCCTCCCTCTACTCTAATGGAGTaGCAGCGACTTAGGTACGAGCGGAAGTCTGCGCAGTCGCAGTCG | + |
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Preference number: 6 (lower is better) Translates to: GLSYTAQVPPSTLME*QRLRYERKSAQSQS Trigger: CGACTGCGACTGCGCAGACTTCCGCTCGTACCTAAGTCGCTGCAACTCCATTAGAGTAGAGGGAGGCACCTGGGCTGTGTATGAAAGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS CCA 72 bp | CGCCCTGGGGTAAGATGTACATGTGCCCGGAGAAGTTaGGCCTTTCATACACAGCCCAGGTGCCTCCCTCTA | + |
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Preference number: 6 (lower is better) Translates to: RPGVRCTCARRS*AFHTQPRCLPL Trigger: TAGAGGGAGGCACCTGGGCTGTGTATGAAAGGCCCAACTTCTCCGGGCACATGTACATCTTACCCCAGGGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS CAA 72 bp | TACACAGCCCAGGTGCCTCCCTCTACTCTAATGGAGTaGCAGCGACTTAGGTACGAGCGGAAGTCTGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: YTAQVPPSTLME*QRLRYERKSAQ Trigger: CTGCGCAGACTTCCGCTCGTACCTAAGTCGCTGCAACTCCATTAGAGTAGAGGGAGGCACCTGGGCTGTGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS GCA 72 bp | TATTCAGGGTACTCGCCCTGGGGTAAGATGTACATGTaGCCGGAGAAGTTGGGCCTTTCATACACAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: YSGYSPWGKMYM*PEKLGLSYTAQ Trigger: CTGGGCTGTGTATGAAAGGCCCAACTTCTCCGGGCACATGTACATCTTACCCCAGGGCGAGTACCCTGAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS CAA 72 bp | GTCTGCGCAGTCGCAGTCGCAGTCATAGCGGCGGCCTaGAAAATTTCGGTCTTCGTAGAAACTAATCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: VCAVAVAVIAAA*KISVFVETNLA Trigger: GGCAAGATTAGTTTCTACGAAGACCGAAATTTTCAAGGCCGCCGCTATGACTGCGACTGCGACTGCGCAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS CAA 90 bp | CGAGCGGAAGTCTGCGCAGTCGCAGTCGCAGTCATAGCGGCGGCCTaGAAAATTTCGGTCTTCGTAGAAACTAATCTTGCCTCCAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: RAEVCAVAVAVIAAA*KISVFVETNLASSF Trigger: AAAACTGGAGGCAAGATTAGTTTCTACGAAGACCGAAATTTTCAAGGCCGCCGCTATGACTGCGACTGCGACTGCGCAGACTTCCGCTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS GCA 72 bp | TGCCACGGTAGTTGGGTAGCTCATAGAAAATCCAGGTaGCTTCTACCACCTTACAGGAATGAATCTCTCGCA | + |
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Preference number: 6 (lower is better) Translates to: CHGSWVAHRKSR*LLPPYRNESLA Trigger: TGCGAGAGATTCATTCCTGTAAGGTGGTAGAAGGCACCTGGATTTTCTATGAGCTACCCAACTACCGTGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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| CDS CCA 72 bp | CCTTCTTATCCAGAAGATACTGTCTGCCACGGTAGTTaGGTAGCTCATAGAAAATCCAGGTGCCTTCTACCA | + |
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Preference number: 6 (lower is better) Translates to: PSYPEDTVCHGS*VAHRKSRCLLP Trigger: TGGTAGAAGGCACCTGGATTTTCTATGAGCTACCCAACTACCGTGGCAGACAGTATCTTCTGGATAAGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040592.6 |
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