Pregenerated sensors for CRYGE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070870

Ensembl transcript IDs: ENSMUST00000161960.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	ATCCATGATTCTCCTCAGAGAGCCCACCCTGGCATTCATGGCGCCCCAGTCGTGCAGGGCTCAGAGGCCTaGTGTGGCCTGGACCCCAGG	+
Preference number: 4 (lower is better) Translates to: IHDSPQRAHPGIHGAPVVQGSEA*CGLDPR Trigger: CCTGGGGTCCAGGCCACATCAGGCCTCTGAGCCCTG...CACGACTGGGGCGCCATGAATGCCAGGGTGGGCTCTCTGAGGAGAATCATGGAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161960.2
CDS-3UTR CCA 90 bp	CCTCAGAGAGCCCACCCTGGCATTCATGGCGCCCCAGTCGTGGTAGCGCCTGTAAAGCGGTCCTGCAGGTaGGAGCAGTCGTCTGTGATC	+
Preference number: 4 (lower is better) Translates to: PQRAHPGIHGAPVVVAPVKRSCR*EQSSVI Trigger: GATCACAGACGACTGCTCCCACCTGCAGGACCGCTT...TACAGGCGCTACCACGACTGGGGCGCCATGAATGCCAGGGTGGGCTCTCTGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161960.2
CDS-3UTR CCA 90 bp	ATCCATGATTCTCCTCAGAGAGCCCACCCTGGCATTCATGGCGCCCCAGTCGTGCTCAGAGGCCTGATGTaGCCTGGACCCCAGGGCAGG	+
Preference number: 4 (lower is better) Translates to: IHDSPQRAHPGIHGAPVVLRGLM*PGPQGR Trigger: CCTGCCCTGGGGTCCAGGCCACATCAGGCCTCTGAG...CACGACTGGGGCGCCATGAATGCCAGGGTGGGCTCTCTGAGGAGAATCATGGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161960.2
CDS-3UTR TCA 90 bp	ATCCATGATTCTCCTCAGAGAGCCCACCCTGGCATTCATGGCGCCCCAGTCGTGGGTCCTTTCCCAAAATaGGGATGCTCTGGGCTCACC	+
Preference number: 4 (lower is better) Translates to: IHDSPQRAHPGIHGAPVVGPFPK*GCSGLT Trigger: GGTGAGCCCAGAGCATCCTCATTTTGGGAAAGGACC...CACGACTGGGGCGCCATGAATGCCAGGGTGGGCTCTCTGAGGAGAATCATGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161960.2
CDS-3UTR GCA 90 bp	ATAGAAATCCATGATTCTCCTCAGAGAGCCCACCCTGGCATTCATGGCGCCCCAGGTTGGAGTGGTCGGTaGTGCACTCATAGTGGCGGC	+
Preference number: 4 (lower is better) Translates to: IEIHDSPQRAHPGIHGAPGWSGR*CTHSGG Trigger: GCCGCCACTATGAGTGCAGCACCGACCACTCCAACC...TGGGGCGCCATGAATGCCAGGGTGGGCTCTCTGAGGAGAATCATGGATTTCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161960.2
CDS CCA 72 bp	GTAAGGCAAGGCAAGGCAGGGCTCAGAGGCCTGATGTaGCCTGGACCCCAGGGCAGGTCCTTTCCCAAAATG	+
Preference number: 6 (lower is better) Translates to: VRQGKAGLRGLM*PGPQGRSFPKM Trigger: CATTTTGGGAAAGGACCTGCCCTGGGGTCCAGGCCACATCAGGCCTCTGAGCCCTGCCTTGCCTTGCCTTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161960.2

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