Pregenerated sensors for CRYGB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073658Ensembl transcript IDs: ENSMUST00000027090.9
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAAGTAGAGTCTCAAAACAGAGTGTTGGGGGATaGGGCAGCAGGAACGAATGG | + |
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Preference number: 4 (lower is better) Translates to: IISYILYLALEEESRVSKQSVGG*GSRNEW Trigger: CCATTCGTTCCTGCTGCCTCATCCCCCAACACTCTG...TTTTGAGACTCTACTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS-3UTR TCA 90 bp | TCTTGGAGTGCCAGAATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAGGGAGTGGATTTCACTaGAGTGGAAGCGATCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: SWSARIISYILYLALEEEGSGFH*SGSDPE Trigger: TTCAGGATCGCTTCCACTTCAGTGAAATCCACTCCC...TTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGATTCTGGCACTCCAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS-3UTR TCA 90 bp | TGGAGTGCCAGAATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAAGTATCGTCTGTGATCTCTaGCATTTGTCCTCTGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: WSARIISYILYLALEEESIVCDL*HLSSEV Trigger: GACTTCAGAGGACAAATGTCAGAGATCACAGACGAT...ACTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGATTCTGGCACTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS-3UTR CCA 90 bp | TTGGAGTGCCAGAATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAAGATCACATTGAGGGAGTaGATTTCACTGAAGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LECQNHKLHTLFGSRGGKITLRE*ISLKWK Trigger: CTTCCACTTCAGTGAAATCCACTCCCTCAATGTGAT...CTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGATTCTGGCACTCCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS-3UTR TCA 90 bp | GCCAGAATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAAGTAGAGTCCTGACATTTGTCCTCTaGAGTCATCTTTTTCGTAGA | + |
|
Preference number: 4 (lower is better) Translates to: ARIISYILYLALEEESRVLTFVL*SHLFRR Trigger: TCTACGAAAAAGATGACTTCAGAGGACAAATGTCAG...GACTCTACTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGATTCTGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| 3UTR CAA 72 bp | TCTTGGAGTGCCAGAATCATAAGCTACATACTTTATTaGGCTCTAGAGGAGGAAAGTAGAGTCTCAAAATGC | + |
|
Preference number: 4 (lower is better) Translates to: SWSARIISYILY*ALEEESRVSKC Trigger: GCATTTTGAGACTCTACTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGATTCTGGCACTCCAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS-3UTR TCA 90 bp | ATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAAGTAGAGTCTCAAAAAGAGACAATCGTCTGTaGTCTCTGACATTTGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: IISYILYLALEEESRVSKRDNRL*SLTFVL Trigger: GAGGACAAATGTCAGAGATCACAGACGATTGTCTCT...TTTTGAGACTCTACTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS-3UTR CAA 90 bp | ATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAAGTAGAGTCTCAAAAGTAAGTGCCAGAGTGTaGGGGGATGAGGCAGCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: IISYILYLALEEESRVSKVSARV*GDEAAG Trigger: TCCTGCTGCCTCATCCCCCAACACTCTGGCACTTAC...TTTTGAGACTCTACTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS-3UTR CAA 90 bp | AGTGCCAGAATCATAAGCTACATACTTTATTTGGCTCTAGAGGAGGAAAGTAGACAGCCCTCCATCACATaGAGGGAGTGGATTTCACTG | + |
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Preference number: 5 (lower is better) Translates to: SARIISYILYLALEEESRQPSIT*REWISL Trigger: CAGTGAAATCCACTCCCTCAATGTGATGGAGGGCTG...TCTACTTTCCTCCTCTAGAGCCAAATAAAGTATGTAGCTTATGATTCTGGCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS TCA 90 bp | GAAGTGGAAGCGATCCTGAAGAGAGAGACAATCGTCTGTGATCTCTaGCATTTGTCCTCTGAAGTCATCTTTTTCGTAGATCCTCATTCT | + |
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Preference number: 5 (lower is better) Translates to: EVEAILKRETIVCDL*HLSSEVIFFVDPHS Trigger: AGAATGAGGATCTACGAAAAAGATGACTTCAGAGGACAAATGTCAGAGATCACAGACGATTGTCTCTCTCTTCAGGATCGCTTCCACTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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| CDS TCA 72 bp | GCGATCCTGAAGAGAGAGACAATCGTCTGTGATCTCTaGCATTTGTCCTCTGAAGTCATCTTTTTCGTAGAT | + |
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Preference number: 6 (lower is better) Translates to: AILKRETIVCDL*HLSSEVIFFVD Trigger: ATCTACGAAAAAGATGACTTCAGAGGACAAATGTCAGAGATCACAGACGATTGTCTCTCTCTTCAGGATCGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027090.9 |
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