Pregenerated sensors for CRYGA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044429

Ensembl transcript IDs: ENSMUST00000061497.9

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CCAGGAACACAGGTTGATTATTTATTGCATATATGGGCTGTAACAAGCAAAAGGCGACCTTGGCATCCATaGCGCCCCAGTCGTGGTAGC	+
Preference number: 4 (lower is better) Translates to: PGTQVDYLLHIWAVTSKRRPWHP*RPSRGS Trigger: GCTACCACGACTGGGGCGCCATGGATGCCAAGGTCG...CCTTTTGCTTGTTACAGCCCATATATGCAATAAATAATCAACCTGTGTTCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061497.9
CDS-3UTR TCA 90 bp	GGAACACAGGTTGATTATTTATTGCATATATGGGCTGTAACAAGCAAAAGGAGGTGTAGTCTCCAGGCCTaGGCAGGTATTGGCGGCCTC	+
Preference number: 4 (lower is better) Translates to: GTQVDYLLHIWAVTSKRRCSLQA*AGIGGL Trigger: GAGGCCGCCAATACCTGCTCAGGCCTGGAGACTACA...CCTCCTTTTGCTTGTTACAGCCCATATATGCAATAAATAATCAACCTGTGTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061497.9
CDS-3UTR CCA 90 bp	TTAGTGCCAGGAACACAGGTTGATTATTTATTGCATATATGGGCTGTAACAAGCTCAGAGAGCCGACCTTaGCATCCATGGCGCCCCAGT	+
Preference number: 4 (lower is better) Translates to: LVPGTQVDYLLHIWAVTSSESRP*HPWRPS Trigger: ACTGGGGCGCCATGGATGCCAAGGTCGGCTCTCTGA...GCTTGTTACAGCCCATATATGCAATAAATAATCAACCTGTGTTCCTGGCACTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061497.9
CDS-3UTR TCA 90 bp	TTAGTGCCAGGAACACAGGTTGATTATTTATTGCATATATGGGCTGTAACAAGCAGGAACAGTCGTCCATaGGCTCAGACACAAGGCCCC	+
Preference number: 4 (lower is better) Translates to: LVPGTQVDYLLHIWAVTSRNSRP*AQTQGP Trigger: GGGGCCTTGTGTCTGAGCTCATGGACGACTGTTCCT...GCTTGTTACAGCCCATATATGCAATAAATAATCAACCTGTGTTCCTGGCACTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061497.9
CDS-3UTR CCA 90 bp	GGAACACAGGTTGATTATTTATTGCATATATGGGCTGTAACAAGCAAAAGGAGGGTGAGAGCTGGTGTATaGAATGGAACGGCAGGAGCG	+
Preference number: 4 (lower is better) Translates to: GTQVDYLLHIWAVTSKRRVRAGV*NGTAGA Trigger: CGCTCCTGCCGTTCCATTCCATACACCAGCTCTCAC...CCTCCTTTTGCTTGTTACAGCCCATATATGCAATAAATAATCAACCTGTGTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061497.9
CDS-3UTR CAA 90 bp	TTAGTGCCAGGAACACAGGTTGATTATTTATTGCATATATGGGCTGTAACAAGCCTCAGAGAGCCGACCTaGGCATCCATGGCGCCCCAG	+
Preference number: 5 (lower is better) Translates to: LVPGTQVDYLLHIWAVTSLREPT*ASMAPQ Trigger: CTGGGGCGCCATGGATGCCAAGGTCGGCTCTCTGAG...GCTTGTTACAGCCCATATATGCAATAAATAATCAACCTGTGTTCCTGGCACTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061497.9
CDS TCA 72 bp	GGCGGAAGCGATCGTGGATGCAGGAACAGTCGTCCATaGGCTCAGACACAAGGCCCCGGTAGTCATCTCTCT	+
Preference number: 6 (lower is better) Translates to: GGSDRGCRNSRP*AQTQGPGSHLS Trigger: AGAGAGATGACTACCGGGGCCTTGTGTCTGAGCTCATGGACGACTGTTCCTGCATCCACGATCGCTTCCGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061497.9
CDS CCA 72 bp	TCTCTCATAAAGCCTTATCCTGTGAGAGCTGGTGTATaGAATGGAACGGCAGGAGCGGATGGAGTCGCTGAA	+
Preference number: 6 (lower is better) Translates to: SLIKPYPVRAGV*NGTAGADGVAE Trigger: TTCAGCGACTCCATCCGCTCCTGCCGTTCCATTCCATACACCAGCTCTCACAGGATAAGGCTTTATGAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061497.9

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