Pregenerated sensors for CRYBB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042240Ensembl transcript IDs: ENSMUST00000031295.8, ENSMUST00000112336.8
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCAGGGCTGGGCCTCAGAGAGCTaGGGGAGTCTGTCCTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: SGGSEVAGLDPGEGEGQGWASES*GSLSSG Trigger: GCCGGAGGACAGACTCCCTCAGCTCTCTGAGGCCCA...GCCCTGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR TCA 90 bp | TCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGTGGGCCTCAGAGAGCTaGGGGAGTCTGTCCTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: SGCQEAPRWRAWTLGKGRWASES*GSLSSG Trigger: GCCGGAGGACAGACTCCCTCAGCTCTCTGAGGCCCA...CCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | TCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCAGGGCGGCCCGCTGAGCTCGTaGGAATGGCCCTGGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: SGGSEVAGLDPGEGEGQGGPLSS*EWPWKF Trigger: GAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCC...GCCCTGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | CTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGCTGTCCTCCGGCTGCTaGTCCAGGAGTCCCAACGTG | + |
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Preference number: 4 (lower is better) Translates to: LGVRRLRGGGPGPWGRGGLSSGC*SRSPNV Trigger: CACGTTGGGACTCCTGGACCAGCAGCCGGAGGACAG...CCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR GCA 90 bp | CTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGAGTCTGTCCTCCGGCTaGTGGTCCAGGAGTCCCAAC | + |
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Preference number: 4 (lower is better) Translates to: LGVRRLRGGGPGPWGRGGSLSSG*WSRSPN Trigger: GTTGGGACTCCTGGACCAGCAGCCGGAGGACAGACT...CCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | GGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCATTGGGGTTAAGGGGCTaGGGCTTGCCCGCCTGTGTC | + |
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Preference number: 4 (lower is better) Translates to: GVRRLRGGGPGPWGRGGSLGLRG*GLPACV Trigger: GACACAGGCGGGCAAGCCCCAGCCCCTTAACCCCAA...TGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | TCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGGCCCGCTGAGCTCGTaGGAATGGCCCTGGAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: SGCQEAPRWRAWTLGKGRGPLSS*EWPWKF Trigger: GAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCC...CCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | GGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCACTGTCCTCCGGCTGCTaGTCCAGGAGTCCCAACGTG | + |
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Preference number: 4 (lower is better) Translates to: GVRRLRGGGPGPWGRGGSLSSGC*SRSPNV Trigger: CACGTTGGGACTCCTGGACCAGCAGCCGGAGGACAG...TGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR GCA 90 bp | GTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCAGAGTCTGTCCTCCGGCTaGTGGTCCAGGAGTCCCAAC | + |
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Preference number: 4 (lower is better) Translates to: VSGGSEVAGLDPGEGEGQSLSSG*WSRSPN Trigger: GTTGGGACTCCTGGACCAGCAGCCGGAGGACAGACT...CTGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR GCA 90 bp | CTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGAAGGCACCTCGCTGGTaGCACTGCATGTCACGGATG | + |
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Preference number: 4 (lower is better) Translates to: LWVSGGSEVAGLDPGEGEKAPRW*HCMSRM Trigger: CATCCGTGACATGCAGTGGCACCAGCGAGGTGCCTT...CTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR GCA 90 bp | TCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGAAGGCACCTCGCTGGTaGCACTGCATGTCACGGATG | + |
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Preference number: 4 (lower is better) Translates to: SGCQEAPRWRAWTLGKGRKAPRW*HCMSRM Trigger: CATCCGTGACATGCAGTGGCACCAGCGAGGTGCCTT...CCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR GCA 90 bp | GGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCAACTGCATGTCACGGATaGGACGCACAGACTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: GVRRLRGGGPGPWGRGGSTACHG*DAQTAP Trigger: AGGTGCAGTCTGTGCGTCGCATCCGTGACATGCAGT...TGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | CTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGCATGGGCATGGAAGCTaGGCACATCGTCGTCTACAA | + |
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Preference number: 4 (lower is better) Translates to: LGVRRLRGGGPGPWGRGGHGHGS*AHRRLQ Trigger: TTGTAGACGACGATGTGCCCAGCTTCCATGCCCATG...CCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | CTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGTGGTATCCATGGGCATaGAAGCTGGGCACATCGTCG | + |
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Preference number: 4 (lower is better) Translates to: LWVSGGSEVAGLDPGEGEWYPWA*KLGTSS Trigger: CGACGATGTGCCCAGCTTCCATGCCCATGGATACCA...CTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | GGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCATCGTGGGAATGGCCCTaGAAGTTCTCCTGTTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: GVRRLRGGGPGPWGRGGSSWEWP*KFSCSK Trigger: CTTCGAACAGGAGAACTTCCAGGGCCATTCCCACGA...TGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | CTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGCATGGGCATGGAAGCTaGGCACATCGTCGTCTACAA | + |
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Preference number: 4 (lower is better) Translates to: LWVSGGSEVAGLDPGEGEHGHGS*AHRRLQ Trigger: TTGTAGACGACGATGTGCCCAGCTTCCATGCCCATG...CTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | GGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCATGATCTTGTGCTCTTaGCTGTCCACTTTGATGGGC | + |
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Preference number: 4 (lower is better) Translates to: GCQEAPRWRAWTLGKGRVMILCS*LSTLMG Trigger: GCCCATCAAAGTGGACAGCCAAGAGCACAAGATCAT...GACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | GTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCAGGAAGACACCTTTTCCTaGTATCCATGGGCATGGAAG | + |
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Preference number: 4 (lower is better) Translates to: VSGGSEVAGLDPGEGEGQEDTFS*YPWAWK Trigger: CTTCCATGCCCATGGATACCAGGAAAAGGTGTCTTC...CTGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | TGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTGAAGACACCTTTTCCTaGTATCCATGGGCATGGAAG | + |
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Preference number: 4 (lower is better) Translates to: WVSGGSEVAGLDPGEGEGEDTFS*YPWAWK Trigger: CTTCCATGCCCATGGATACCAGGAAAAGGTGTCTTC...ACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | AAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTTGGGGTTAAGGGGCTaGGGCTTGCCCGCCTGTGTC | + |
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Preference number: 4 (lower is better) Translates to: KPHFILHSGCQEAPRWRALGLRG*GLPACV Trigger: GACACAGGCGGGCAAGCCCCAGCCCCTTAACCCCAA...GGCCCGCCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR GCA 90 bp | GTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCAGTATAAGATGATCTTGTaGTCTTGGCTGTCCACTTTG | + |
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Preference number: 4 (lower is better) Translates to: VSGGSEVAGLDPGEGEGQYKMIL*SWLSTL Trigger: CAAAGTGGACAGCCAAGAGCACAAGATCATCTTATA...CTGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | AAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCCTGAGCTCGTGGGAATaGCCCTGGAAGTTCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: KPHFILHSGCQEAPRWRALSSWE*PWKFSC Trigger: ACAGGAGAACTTCCAGGGCCATTCCCACGAGCTCAG...GGCCCGCCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | AAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGTATCCATGGGCATaGAAGCTGGGCACATCGTCG | + |
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Preference number: 4 (lower is better) Translates to: KPHFILHSGCQEAPRWRAWYPWA*KLGTSS Trigger: CGACGATGTGCCCAGCTTCCATGCCCATGGATACCA...GGCCCGCCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | AAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTCGTGGGAATGGCCCTaGAAGTTCTCCTGTTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: KPHFILHSGCQEAPRWRASWEWP*KFSCSK Trigger: CTTCGAACAGGAGAACTTCCAGGGCCATTCCCACGA...GGCCCGCCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CCA 90 bp | AAGTTGCAAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGATGATCTTGTGCTCTTaGCTGTCCACTTTGATGGGC | + |
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Preference number: 4 (lower is better) Translates to: KLQATLYSSLWVSGGSEVMILCS*LSTLMG Trigger: GCCCATCAAAGTGGACAGCCAAGAGCACAAGATCAT...CACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTTGCAACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112336.8 |
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| CDS-3UTR GCA 90 bp | AGTTGCAAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGTATAAGATGATCTTGTaGTCTTGGCTGTCCACTTTG | + |
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Preference number: 4 (lower is better) Translates to: SCKPHFILHSGCQEAPRWYKMIL*SWLSTL Trigger: CAAAGTGGACAGCCAAGAGCACAAGATCATCTTATA...CCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTTGCAACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | GGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCCCAGTCTCCTTCAGGTaGGGGCAGGGCCCGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GCQEAPRWRAWTLGKGRVPVSFR*GQGPLS Trigger: GCTCAGCGGGCCCTGCCCCAACCTGAAGGAGACTGG...GACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | TCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGTTAAGGGGCTGGGGCTaGCCCGCCTGTGTCTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: SGCQEAPRWRAWTLGKGRLRGWG*PACVWW Trigger: CCACCAGACACAGGCGGGCAAGCCCCAGCCCCTTAA...CCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCAGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | TGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTTCTTGGCTGTCCACTTaGATGGGCCTCAGAGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: WVSGGSEVAGLDPGEGEGSWLST*MGLREL Trigger: CAGCTCTCTGAGGCCCATCAAAGTGGACAGCCAAGA...ACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | TGGGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTGATGATCTTGTGCTCTaGGCTGTCCACTTTGATGGG | + |
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Preference number: 5 (lower is better) Translates to: WVSGGSEVAGLDPGEGEGDDLVL*AVHFDG Trigger: CCCATCAAAGTGGACAGCCAAGAGCACAAGATCATC...ACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | AGTTGCAAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGCCAGTCTCCTTCAGGTaGGGGCAGGGCCCGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: SCKPHFILHSGCQEAPRWPVSFR*GQGPLS Trigger: GCTCAGCGGGCCCTGCCCCAACCTGAAGGAGACTGG...CCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTTGCAACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | GGTGTCAGGAGGCTCCGAGGTGGCGGGCCTGGACCCTGGGGAAGGGGAGGGTCATTCTTGCCAGTAAAGTaGGGGTTCTCATATAAGATG | + |
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Preference number: 5 (lower is better) Translates to: GVRRLRGGGPGPWGRGGSFLPVK*GFSYKM Trigger: CATCTTATATGAGAACCCCAACTTTACTGGCAAGAA...TGACCCTCCCCTTCCCCAGGGTCCAGGCCCGCCACCTCGGAGCCTCCTGACACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS CCA 90 bp | CCAGTCTCCTTCAGGTTGGGGCAGGGCCCGCTGAGCTCGTGGGAATaGCCCTGGAAGTTCTCCTGTTCGAAGATGATGATCTTGGGGTTA | + |
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Preference number: 5 (lower is better) Translates to: PVSFRLGQGPLSSWE*PWKFSCSKMMILGL Trigger: TAACCCCAAGATCATCATCTTCGAACAGGAGAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCCCTGCCCCAACCTGAAGGAGACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | AAGTTGCAAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGTTAAGGGGCTGGGGCTaGCCCGCCTGTGTCTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: KLQATLYSSLWVSGGSEVLRGWG*PACVWW Trigger: CCACCAGACACAGGCGGGCAAGCCCCAGCCCCTTAA...CACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTTGCAACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | CAAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCGATGATCTTGTGCTCTaGGCTGTCCACTTTGATGGG | + |
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Preference number: 5 (lower is better) Translates to: QATLYSSLWVSGGSEVAGDDLVL*AVHFDG Trigger: CCCATCAAAGTGGACAGCCAAGAGCACAAGATCATC...GCCCGCCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS-3UTR CAA 90 bp | CAAGCCACACTTTATTCTTCACTCTGGGTGTCAGGAGGCTCCGAGGTGGCGGGCTTCTTGCCAGTAAAGTaGGGGTTCTCATATAAGATG | + |
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Preference number: 5 (lower is better) Translates to: QATLYSSLWVSGGSEVAGFLPVK*GFSYKM Trigger: CATCTTATATGAGAACCCCAACTTTACTGGCAAGAA...GCCCGCCACCTCGGAGCCTCCTGACACCCAGAGTGAAGAATAAAGTGTGGCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS CAA 72 bp | ACGGAGCCCGCCTTCTCCATACCAGTCTCCTTCAGGTaGGGGCAGGGCCCGCTGAGCTCGTGGGAATGGCCC | + |
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Preference number: 6 (lower is better) Translates to: TEPAFSIPVSFR*GQGPLSSWEWP Trigger: GGGCCATTCCCACGAGCTCAGCGGGCCCTGCCCCAACCTGAAGGAGACTGGTATGGAGAAGGCGGGCTCCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS CAA 90 bp | TGCACCAGGACGGAGCCCGCCTTCTCCATACCAGTCTCCTTCAGGTaGGGGCAGGGCCCGCTGAGCTCGTGGGAATGGCCCTGGAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: CTRTEPAFSIPVSFR*GQGPLSSWEWPWKF Trigger: GAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCCCTGCCCCAACCTGAAGGAGACTGGTATGGAGAAGGCGGGCTCCGTCCTGGTGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS TCA 72 bp | CCATACCAGTCTCCTTCAGGTTGGGGCAGGGCCCGCTaGGCTCGTGGGAATGGCCCTGGAAGTTCTCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: PYQSPSGWGRAR*ARGNGPGSSPV Trigger: AACAGGAGAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCCCTGCCCCAACCTGAAGGAGACTGGTATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS CCA 72 bp | TCCTGTTCGAAGATGATGATCTTGGGGTTAAGGGGCTaGGGCTTGCCCGCCTGTGTCTGGTGGTCTGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: SCSKMMILGLRG*GLPACVWWSEA Trigger: GGCCTCAGACCACCAGACACAGGCGGGCAAGCCCCAGCCCCTTAACCCCAAGATCATCATCTTCGAACAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS CCA 72 bp | TTGGGGCAGGGCCCGCTGAGCTCGTGGGAATGGCCCTaGAAGTTCTCCTGTTCGAAGATGATGATCTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: LGQGPLSSWEWP*KFSCSKMMILG Trigger: CCCCAAGATCATCATCTTCGAACAGGAGAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCCCTGCCCCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS CCA 72 bp | TTCAGGTTGGGGCAGGGCCCGCTGAGCTCGTGGGAATaGCCCTGGAAGTTCTCCTGTTCGAAGATGATGATC | + |
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Preference number: 6 (lower is better) Translates to: FRLGQGPLSSWE*PWKFSCSKMMI Trigger: GATCATCATCTTCGAACAGGAGAACTTCCAGGGCCATTCCCACGAGCTCAGCGGGCCCTGCCCCAACCTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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| CDS CCA 72 bp | CGCACGGAAGACACCTTTTCCTGGTATCCATGGGCATaGAAGCTGGGCACATCGTCGTCTACAATCTCCATC | + |
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Preference number: 6 (lower is better) Translates to: RTEDTFSWYPWA*KLGTSSSTISI Trigger: GATGGAGATTGTAGACGACGATGTGCCCAGCTTCCATGCCCATGGATACCAGGAAAAGGTGTCTTCCGTGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031295.8 ENSMUST00000112336.8 |
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