Pregenerated sensors for CRYBA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000724Ensembl transcript IDs: ENSMUST00000078623.5
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTCTACTTAGCAAGATGTCATaGTTGAGGGATTTTTGGAAC | + |
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Preference number: 2 (lower is better) Translates to: WILALTFGSSVWAEHEILLSKMS*LRDFWN Trigger: GTTCCAAAAATCCCTCAAGCATGACATCTTGCTAAG...TAGAATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR TCA 90 bp | TTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAATTGGGCAGGAGCTGGTaGACTCCATCCTCTTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LLWILALTFGSSVWAEHELGRSW*TPSSCP Trigger: AGGGCAAGAGGATGGAGTTCACCAGCTCCTGCCCAA...TTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CCA 90 bp | AATTCTAGAGTGCTTAGCAAGATGTCATGCTTGAGGGATTTTTGGAACTTTTGCTGGCCCCAAGGATCCTaGCATAGGGTTGGTCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: NSRVLSKMSCLRDFWNFCWPQGS*HRVGLS Trigger: GCTCAGACCAACCCTATGCCAGGATCCTTGGGGCCA...GCAAAAGTTCCAAAAATCCCTCAAGCATGACATCTTGCTAAGCACTCTAGAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CCA 90 bp | TTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTGTGAGATCCCCACTCTaGCCAGTGCTTGTAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LWILALTFGSSVWAEHEIVRSPL*PVLVVS Trigger: GGAGACTACAAGCACTGGCCAGAGTGGGGATCTCAC...AATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR TCA 90 bp | AATTCTAGAGTGCTTAGCAAGATGTCATGCTTGAGGGATTTTTGGAACTTTTGCGGCATAGGGTTGGTCTaGGCCATCTTGGTGGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: NSRVLSKMSCLRDFWNFCGIGLV*AILVVG Trigger: TCCAACCACCAAGATGGCTCAGACCAACCCTATGCC...GCAAAAGTTCCAAAAATCCCTCAAGCATGACATCTTGCTAAGCACTCTAGAATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR TCA 90 bp | TGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTCTACTCCTCTTTCCAGGATaGACTGTTGCCCACAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: WILALTFGSSVWAEHEILLLFPG*TVAHRS Trigger: GCTTCTGTGGGCAACAGTTCATCCTGGAAAGAGGAG...TAGAATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR GCA 90 bp | TTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTCAATATGATAGGCATTaGTCCCGCTCCAGGCATCCC | + |
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Preference number: 4 (lower is better) Translates to: LWILALTFGSSVWAEHEIQYDRH*SRSRHP Trigger: GGGATGCCTGGAGCGGGAGCAATGCCTATCATATTG...AATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR TCA 90 bp | TTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAATGGGTCGGAAGGACATaGGACGCTCAATATGATAGG | + |
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Preference number: 4 (lower is better) Translates to: LLWILALTFGSSVWAEHEWVGRT*DAQYDR Trigger: CCTATCATATTGAGCGTCTCATGTCCTTCCGACCCA...TTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR GCA 90 bp | TGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTCTATCCAGGATGAACTGTTaGCCACAGAAGCTGGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: WILALTFGSSVWAEHEILSRMNC*PQKLVC Trigger: ACACACCAGCTTCTGTGGGCAACAGTTCATCCTGGA...TAGAATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CCA 90 bp | TTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTACGTTCAGAGACATTTaGGCAGGAGCTGGTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: LWILALTFGSSVWAEHEITFRDI*AGAGEL Trigger: GAGTTCACCAGCTCCTGCCCAAATGTCTCTGAACGT...AATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CCA 90 bp | TTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTATTCGGCGAATTGATTaGATCTGGGAAGTCTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: LWILALTFGSSVWAEHEIIRRID*IWEVWA Trigger: CGCCCAGACTTCCCAGATCCAATCAATTCGCCGAAT...AATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR TCA 90 bp | TTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTTTGTATTCGGCGAATTaGTTGGATCTGGGAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LWILALTFGSSVWAEHEILYSAN*LDLGSL Trigger: CAGACTTCCCAGATCCAATCAATTCGCCGAATACAA...AATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CCA 90 bp | AATTCTAGAGTGCTTAGCAAGATGTCATGCTTGAGGGATTTTTGGAACTTTTGCGTTGCCCACAGAAGCTaGTGTGTTCATAACCAATCC | + |
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Preference number: 4 (lower is better) Translates to: NSRVLSKMSCLRDFWNFCVAHRS*CVHNQS Trigger: GGATTGGTTATGAACACACCAGCTTCTGTGGGCAAC...GCAAAAGTTCCAAAAATCCCTCAAGCATGACATCTTGCTAAGCACTCTAGAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR TCA 90 bp | AATTCTAGAGTGCTTAGCAAGATGTCATGCTTGAGGGATTTTTGGAACTTTTGCAACCAACTTCATTGTTaGACCAACCCATGGCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: NSRVLSKMSCLRDFWNFCNQLHC*TNPWLA Trigger: TGCAAGCCATGGGTTGGTTCAACAATGAAGTTGGTT...GCAAAAGTTCCAAAAATCCCTCAAGCATGACATCTTGCTAAGCACTCTAGAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CCA 90 bp | TTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAATCACAGATTTCCCACTaGCGTCCAATAAAGTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: LLWILALTFGSSVWAEHESQISH*RPIKFS Trigger: AGAGAACTTTATTGGACGCCAGTGGGAAATCTGTGA...TTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR TCA 90 bp | TTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAACACTCCACCTTAAGTaGCCGGACATTATCAAAATT | + |
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Preference number: 4 (lower is better) Translates to: LLWILALTFGSSVWAEHETLHLK*PDIIKI Trigger: AATTTTGATAATGTCCGGTCACTTAAGGTGGAGTGT...TTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS CCA 90 bp | GTTCTCTTGATCGTAGATGGTTATCTTCCATGGCCCCAAGGATCCTaGCATAGGGTTGGTCTGAGCCATCTTGGTGGTTGGAAGAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: VLLIVDGYLPWPQGS*HRVGLSHLGGWKSF Trigger: GAAACTCTTCCAACCACCAAGATGGCTCAGACCAACCCTATGCCAGGATCCTTGGGGCCATGGAAGATAACCATCTACGATCAAGAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CAA 90 bp | TGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACATGAAATTCTAGAACCAACCCATGGCTaGCAAGGAAGGGTAGTCATC | + |
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Preference number: 5 (lower is better) Translates to: WILALTFGSSVWAEHEILEPTHG*QGRVVI Trigger: GATGACTACCCTTCCTTGCAAGCCATGGGTTGGTTC...TAGAATTTCATGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CAA 90 bp | ACATTTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAACAGAACCAACTTCATTGTaGAACCAACCCATGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: TFIVDFSANIWKQCLGRTEPTSL*NQPMAC Trigger: GCAAGCCATGGGTTGGTTCAACAATGAAGTTGGTTC...TGTTCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CAA 90 bp | AATTCTAGAGTGCTTAGCAAGATGTCATGCTTGAGGGATTTTTGGAACTTTTGCAACCCAGGCCCCACATaGTATCTTCATGGAACCAAC | + |
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Preference number: 5 (lower is better) Translates to: NSRVLSKMSCLRDFWNFCNPGPT*YLHGTN Trigger: GTTGGTTCCATGAAGATACAATGTGGGGCCTGGGTT...GCAAAAGTTCCAAAAATCCCTCAAGCATGACATCTTGCTAAGCACTCTAGAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CAA 90 bp | ATGACATTTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAGCCCTGGAAGTTCTCTaGATCGTAGATGGTTATCTT | + |
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Preference number: 5 (lower is better) Translates to: MTFIVDFSANIWKQCLGRALEVL*IVDGYL Trigger: AAGATAACCATCTACGATCAAGAGAACTTCCAGGGC...TCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAAATGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CAA 90 bp | ATGACATTTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAATGGAACCAACTTCATaGTTGAACCAACCCATGGCT | + |
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Preference number: 5 (lower is better) Translates to: MTFIVDFSANIWKQCLGRMEPTS*LNQPMA Trigger: AGCCATGGGTTGGTTCAACAATGAAGTTGGTTCCAT...TCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAAATGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS-3UTR CAA 90 bp | ATGACATTTATTGTGGATTTTAGCGCTAACATTTGGAAGCAGTGTCTGGGCAGAGTTGTATTCGGCGAATaGATTGGATCTGGGAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: MTFIVDFSANIWKQCLGRVVFGE*IGSGKS Trigger: AGACTTCCCAGATCCAATCAATTCGCCGAATACAAC...TCTGCCCAGACACTGCTTCCAAATGTTAGCGCTAAAATCCACAATAAATGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS CCA 72 bp | ATCGTAGATGGTTATCTTCCATGGCCCCAAGGATCCTaGCATAGGGTTGGTCTGAGCCATCTTGGTGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: IVDGYLPWPQGS*HRVGLSHLGGW Trigger: CCAACCACCAAGATGGCTCAGACCAACCCTATGCCAGGATCCTTGGGGCCATGGAAGATAACCATCTACGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS TCA 72 bp | CCCCACATTGTATCTTCATGGAACCAACTTCATTGTTaGACCAACCCATGGCTTGCAAGGAAGGGTAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: PHIVSSWNQLHC*TNPWLARKGSH Trigger: ATGACTACCCTTCCTTGCAAGCCATGGGTTGGTTCAACAATGAAGTTGGTTCCATGAAGATACAATGTGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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| CDS TCA 72 bp | TTCATAACCAATCCAGGCGCCACACTCCACCTTAAGTaGCCGGACATTATCAAAATTACGTTCAGAGACATT | + |
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Preference number: 6 (lower is better) Translates to: FITNPGATLHLK*PDIIKITFRDI Trigger: AATGTCTCTGAACGTAATTTTGATAATGTCCGGTCACTTAAGGTGGAGTGTGGCGCCTGGATTGGTTATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078623.5 |
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