Pregenerated sensors for CRYAA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024041Ensembl transcript IDs: ENSMUST00000019192.8, ENSMUST00000228089.3, ENSMUST00000228716.3
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGAGGCTGCCATCAGGGGCTCTAGCACAGGGCTCTTGGAGTTGGTaGGCCACCATTCACTCTGCCCTCTGGAGCAGTGCTCAGATGCCA | + |
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Preference number: 1 (lower is better) Translates to: RRLPSGALAQGSWSW*ATIHSALWSSAQMP Trigger: TGGCATCTGAGCACTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCCAAGAGCCCTGTGCTAGAGCCCCTGATGGCAGCCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR CCA 90 bp | AAGCTCTCTAAGCCACTCTCTCAGACCCTCAGCCCTCTGAGAAAGTaGGAAGGAAACAGAGAAAGAAAGGAAGGCAGGAAGGCAGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: KLSKPLSQTLSPLRK*EGNRERKEGRKAGR Trigger: CCTTCCTGCCTTCCTGCCTTCCTTTCTTTCTCTGTTTCCTTCCCACTTTCTCAGAGGGCTGAGGGTCTGAGAGAGTGGCTTAGAGAGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR CCA 90 bp | TACTACAGAGTAGAGAAAGTCACAGGAAGAGGATATGAGAGAAGCTaGCTGTCGGAGCCCAGCACACGTGGCTGCAGTAAGTATGGGCAA | + |
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Preference number: 1 (lower is better) Translates to: YYRVEKVTGRGYERS*LSEPSTRGCSKYGQ Trigger: TTGCCCATACTTACTGCAGCCACGTGTGCTGGGCTCCGACAGCCAGCTTCTCTCATATCCTCTTCCTGTGACTTTCTCTACTCTGTAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR TCA 90 bp | TGTCACCTGCTCTTTATTGTCTGCCAGGGGCTCCATTCTCATGGATaGCCAGGGTCCTCAGGAGCAATACTACAGAGTAGAGAAAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: CHLLFIVCQGLHSHG*PGSSGAILQSRESH Trigger: GTGACTTTCTCTACTCTGTAGTATTGCTCCTGAGGACCCTGGTCATCCATGAGAATGGAGCCCCTGGCAGACAATAAAGAGCAGGTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR CCA 90 bp | CTGAACCCGCGGCAATCTCAGGCCAAGAGCCCAAGCTCTCTAAGCCACTCTCTCGGTCCCTGGGCTGGATaGACCAGGGGCCTCAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: LNPRQSQAKSPSSLSHSLGPWAG*TRGLRG Trigger: TCCCCTGAGGCCCCTGGTCCATCCAGCCCAGGGACC...GAGAGAGTGGCTTAGAGAGCTTGGGCTCTTGGCCTGAGATTGCCGCGGGTTCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR-3UTR CCA 90 bp | TCCGACCAGCTGGTGTTGAGCCTGGGTCACCCTGAACCCGCGGCAATCTCAGGCGCAGACTCTTTGCTGTaGTCCCTGGGCTGGATGGAC | + |
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Preference number: 2 (lower is better) Translates to: SDQLVLSLGHPEPAAISGADSLL*SLGWMD Trigger: GTCCATCCAGCCCAGGGACCACAGCAAAGAGTCTGC...GCCTGAGATTGCCGCGGGTTCAGGGTGACCCAGGCTCAACACCAGCTGGTCGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR-3UTR GCA 90 bp | GACCAGCTGGTGTTGAGCCTGGGTCACCCTGAACCCGCGGCAATCTCAGGCCAAGGAAGGCAGACTCTTTaGTGTGGTCCCTGGGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: DQLVLSLGHPEPAAISGQGRQTL*CGPWAG Trigger: TCCAGCCCAGGGACCACAGCAAAGAGTCTGCCTTCC...TTGGCCTGAGATTGCCGCGGGTTCAGGGTGACCCAGGCTCAACACCAGCTGGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR CAA 90 bp | GGCAAAAAGGAGGAGGCTGCCATCAGGGGCTCTAGCACAGGGCTCTaGGAGTTGGTGAGCCACCATTCACTCTGCCCTCTGGAGCAGTGC | + |
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Preference number: 2 (lower is better) Translates to: GKKEEAAIRGSSTGL*ELVSHHSLCPLEQC Trigger: GCACTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCCAAGAGCCCTGTGCTAGAGCCCCTGATGGCAGCCTCCTCCTTTTTGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR TCA 90 bp | TCCGACCAGCTGGTGTTGAGCCTGGGTCACCCTGAACCCGCGGCAATCTCAGGCAGACCCTCAGCCCTCTaGGAAAGTGGGAAGGAAACA | + |
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Preference number: 2 (lower is better) Translates to: SDQLVLSLGHPEPAAISGRPSAL*ESGKET Trigger: TGTTTCCTTCCCACTTTCTCAGAGGGCTGAGGGTCT...GCCTGAGATTGCCGCGGGTTCAGGGTGACCCAGGCTCAACACCAGCTGGTCGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR CAA 90 bp | AAGGAGGAGGCTGCCATCAGGGGCTCTAGCACAGGGCTCTTGGAGTaGGTGAGCCACCATTCACTCTGCCCTCTGGAGCAGTGCTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: KEEAAIRGSSTGLLE*VSHHSLCPLEQCSD Trigger: ATCTGAGCACTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCCAAGAGCCCTGTGCTAGAGCCCCTGATGGCAGCCTCCTCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR CCA 90 bp | GGAGTTGGTGAGCCACCATTCACTCTGCCCTCTGGAGCAGTGCTCAGATGCCACGCAGACTCTTTGCTGTaGTCCCTGGGCTGGATGGAC | + |
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Preference number: 2 (lower is better) Translates to: GVGEPPFTLPSGAVLRCHADSLL*SLGWMD Trigger: GTCCATCCAGCCCAGGGACCACAGCAAAGAGTCTGC...GTGGCATCTGAGCACTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR TCA 90 bp | CTGAACCCGCGGCAATCTCAGGCCAAGAGCCCAAGCTCTCTAAGCCACTCTCTCAGACCCTCAGCCCTCTaGGAAAGTGGGAAGGAAACA | + |
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Preference number: 2 (lower is better) Translates to: LNPRQSQAKSPSSLSHSLRPSAL*ESGKET Trigger: TGTTTCCTTCCCACTTTCTCAGAGGGCTGAGGGTCT...GAGAGAGTGGCTTAGAGAGCTTGGGCTCTTGGCCTGAGATTGCCGCGGGTTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR-3UTR GCA 90 bp | CAGGAAGAGGATATGAGAGAAGCTGGCTGTCGGAGCCCAGCACACGTGGCTGCAGGAGCAGTGCTCAGATaGCACTTTCCAGGAAGACAG | + |
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Preference number: 2 (lower is better) Translates to: QEEDMREAGCRSPAHVAAGAVLR*HFPGRQ Trigger: CTGTCTTCCTGGAAAGTGGCATCTGAGCACTGCTCC...TGCAGCCACGTGTGCTGGGCTCCGACAGCCAGCTTCTCTCATATCCTCTTCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR TCA 90 bp | CACGTGGCTGCAGTAAGTATGGGCAAAAAGGAGGAGGCTGCCATCAGGGGCTCTAGACCCTCAGCCCTCTaGGAAAGTGGGAAGGAAACA | + |
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Preference number: 2 (lower is better) Translates to: HVAAVSMGKKEEAAIRGSRPSAL*ESGKET Trigger: TGTTTCCTTCCCACTTTCTCAGAGGGCTGAGGGTCT...AGAGCCCCTGATGGCAGCCTCCTCCTTTTTGCCCATACTTACTGCAGCCACGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAAGACAGAAAATCTCAAGAGTTCAATACCATCATTCCCTCCGACCAGCTGGTCCCTGGGCTGGATaGACCAGGGGCCTCAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: PGRQKISRVQYHHSLRPAGPWAG*TRGLRG Trigger: TCCCCTGAGGCCCCTGGTCCATCCAGCCCAGGGACC...AGCTGGTCGGAGGGAATGATGGTATTGAACTCTTGAGATTTTCTGTCTTCCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR CAA 90 bp | AAATCTCAAGAGTTCAATACCATCATTCCCTCCGACCAGCTGGTGTaGAGCCTGGGTCACCCTGAACCCGCGGCAATCTCAGGCCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: KSQEFNTIIPSDQLV*SLGHPEPAAISGQE Trigger: CTCTTGGCCTGAGATTGCCGCGGGTTCAGGGTGACCCAGGCTCAACACCAGCTGGTCGGAGGGAATGATGGTATTGAACTCTTGAGATTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR-3UTR TCA 90 bp | CCTCAGGAGCAATACTACAGAGTAGAGAAAGTCACAGGAAGAGGATATGAGAGACCGACCAGCTGGTGTTaGGCCTGGGTCACCCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: PQEQYYRVEKVTGRGYERPTSWC*AWVTLN Trigger: GTTCAGGGTGACCCAGGCTCAACACCAGCTGGTCGG...TCTCTCATATCCTCTTCCTGTGACTTTCTCTACTCTGTAGTATTGCTCCTGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGGAAGACAGAAAATCTCAAGAGTTCAATACCATCATTCCCTCCGACCAGCTGGAAGGCAGACTCTTTaGTGTGGTCCCTGGGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: PGRQKISRVQYHHSLRPAGRQTL*CGPWAG Trigger: TCCAGCCCAGGGACCACAGCAAAGAGTCTGCCTTCC...AGCTGGTCGGAGGGAATGATGGTATTGAACTCTTGAGATTTTCTGTCTTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR-3UTR CCA 90 bp | CCTCAGGAGCAATACTACAGAGTAGAGAAAGTCACAGGAAGAGGATATGAGAGAGCAGACTCTTTGCTGTaGTCCCTGGGCTGGATGGAC | + |
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Preference number: 2 (lower is better) Translates to: PQEQYYRVEKVTGRGYERADSLL*SLGWMD Trigger: GTCCATCCAGCCCAGGGACCACAGCAAAGAGTCTGC...TCTCTCATATCCTCTTCCTGTGACTTTCTCTACTCTGTAGTATTGCTCCTGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR TCA 72 bp | TCCCTCCGACCAGCTGGTGTTGAGCCTGGGTCACCCTaGACCCGCGGCAATCTCAGGCCAAGAGCCCAAGCT | + |
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Preference number: 3 (lower is better) Translates to: SLRPAGVEPGSP*TRGNLRPRAQA Trigger: AGCTTGGGCTCTTGGCCTGAGATTGCCGCGGGTTCAGGGTGACCCAGGCTCAACACCAGCTGGTCGGAGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR CCA 72 bp | AGGAAGGCAGGAAGGCAGACTCTTTGCTGTGGTCCCTaGGCTGGATGGACCAGGGGCCTCAGGGGACAACCA | + |
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Preference number: 3 (lower is better) Translates to: RKAGRQTLCCGP*AGWTRGLRGQP Trigger: TGGTTGTCCCCTGAGGCCCCTGGTCCATCCAGCCCAGGGACCACAGCAAAGAGTCTGCCTTCCTGCCTTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| 3UTR-3UTR CAA 90 bp | CAGGAAGAGGATATGAGAGAAGCTGGCTGTCGGAGCCCAGCACACGTGGCTGCATCTAGCACAGGGCTCTaGGAGTTGGTGAGCCACCAT | + |
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Preference number: 3 (lower is better) Translates to: QEEDMREAGCRSPAHVAASSTGL*ELVSHH Trigger: ATGGTGGCTCACCAACTCCAAGAGCCCTGTGCTAGA...TGCAGCCACGTGTGCTGGGCTCCGACAGCCAGCTTCTCTCATATCCTCTTCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR GCA 72 bp | GAGAGAAGCTGGCTGTCGGAGCCCAGCACACGTGGCTaGAGTAAGTATGGGCAAAAAGGAGGAGGCTGCCAT | + |
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Preference number: 3 (lower is better) Translates to: ERSWLSEPSTRG*SKYGQKGGGCH Trigger: ATGGCAGCCTCCTCCTTTTTGCCCATACTTACTGCAGCCACGTGTGCTGGGCTCCGACAGCCAGCTTCTCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR CAA 90 bp | CACGTGGCTGCAGTAAGTATGGGCAAAAAGGAGGAGGCTGCCATCAGGGGCTCTACAGGGCTCTTGGAGTaGGTGAGCCACCATTCACTC | + |
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Preference number: 3 (lower is better) Translates to: HVAAVSMGKKEEAAIRGSTGLLE*VSHHSL Trigger: GAGTGAATGGTGGCTCACCAACTCCAAGAGCCCTGT...AGAGCCCCTGATGGCAGCCTCCTCCTTTTTGCCCATACTTACTGCAGCCACGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR GCA 72 bp | ACAGGGCTCTTGGAGTTGGTGAGCCACCATTCACTCTaGCCTCTGGAGCAGTGCTCAGATGCCACTTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: TGLLELVSHHSL*PLEQCSDATFQ Trigger: CTGGAAAGTGGCATCTGAGCACTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCCAAGAGCCCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR CCA 72 bp | GTAGAGAAAGTCACAGGAAGAGGATATGAGAGAAGCTaGCTGTCGGAGCCCAGCACACGTGGCTGCAGTAAG | + |
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Preference number: 3 (lower is better) Translates to: VEKVTGRGYERS*LSEPSTRGCSK Trigger: CTTACTGCAGCCACGTGTGCTGGGCTCCGACAGCCAGCTTCTCTCATATCCTCTTCCTGTGACTTTCTCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR CCA 72 bp | CCTGCTCTTTATTGTCTGCCAGGGGCTCCATTCTCATaGATGACCAGGGTCCTCAGGAGCAATACTACAGAG | + |
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Preference number: 3 (lower is better) Translates to: PALYCLPGAPFS*MTRVLRSNTTE Trigger: CTCTGTAGTATTGCTCCTGAGGACCCTGGTCATCCATGAGAATGGAGCCCCTGGCAGACAATAAAGAGCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR-3UTR CAA 90 bp | CCTCAGGAGCAATACTACAGAGTAGAGAAAGTCACAGGAAGAGGATATGAGAGATCCGACCAGCTGGTGTaGAGCCTGGGTCACCCTGAA | + |
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Preference number: 3 (lower is better) Translates to: PQEQYYRVEKVTGRGYERSDQLV*SLGHPE Trigger: TTCAGGGTGACCCAGGCTCAACACCAGCTGGTCGGA...TCTCTCATATCCTCTTCCTGTGACTTTCTCTACTCTGTAGTATTGCTCCTGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR CAA 72 bp | GCTGCCATCAGGGGCTCTAGCACAGGGCTCTTGGAGTaGGTGAGCCACCATTCACTCTGCCCTCTGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: AAIRGSSTGLLE*VSHHSLCPLEQ Trigger: CTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCCAAGAGCCCTGTGCTAGAGCCCCTGATGGCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| 3UTR CAA 72 bp | GAGGAGGCTGCCATCAGGGGCTCTAGCACAGGGCTCTaGGAGTTGGTGAGCCACCATTCACTCTGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: EEAAIRGSSTGL*ELVSHHSLCPL Trigger: CAGAGGGCAGAGTGAATGGTGGCTCACCAACTCCAAGAGCCCTGTGCTAGAGCCCCTGATGGCAGCCTCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| CDS-3UTR CCA 90 bp | CTGAACCCGCGGCAATCTCAGGCCAAGAGCCCAAGCTCTCTAAGCCACTCTCTCGCATCCAAACCGGACTaGACCTTGGGGCCAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: LNPRQSQAKSPSSLSHSLASKPD*TLGPEK Trigger: CTTCTCTGGCCCCAAGGTCCAGTCCGGTTTGGATGC...GAGAGAGTGGCTTAGAGAGCTTGGGCTCTTGGCCTGAGATTGCCGCGGGTTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| CDS-3UTR CCA 90 bp | GGAGTTGGTGAGCCACCATTCACTCTGCCCTCTGGAGCAGTGCTCAGATGCCACGCATCCAAACCGGACTaGACCTTGGGGCCAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: GVGEPPFTLPSGAVLRCHASKPD*TLGPEK Trigger: CTTCTCTGGCCCCAAGGTCCAGTCCGGTTTGGATGC...GTGGCATCTGAGCACTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228716.3 |
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| CDS-3UTR GCA 90 bp | GGAGTTGGTGAGCCACCATTCACTCTGCCCTCTGGAGCAGTGCTCAGATGCCACCCAGCATGTGGTTGGTaGATTACAAACCACATATGG | + |
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Preference number: 4 (lower is better) Translates to: GVGEPPFTLPSGAVLRCHPACGW*ITNHIW Trigger: CCATATGTGGTTTGTAATGCACCAACCACATGCTGG...GTGGCATCTGAGCACTGCTCCAGAGGGCAGAGTGAATGGTGGCTCACCAACTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019192.8 |
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| CDS-3UTR GCA 90 bp | AACCCGCGGCAATCTCAGGCCAAGAGCCCAAGCTCTCTAAGCCACTCTCTCAGACCAGCATGTGGTTGGTaGATTACAAACCACATATGG | + |
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Preference number: 4 (lower is better) Translates to: NPRQSQAKSPSSLSHSLRPACGW*ITNHIW Trigger: CCATATGTGGTTTGTAATGCACCAACCACATGCTGG...TCTGAGAGAGTGGCTTAGAGAGCTTGGGCTCTTGGCCTGAGATTGCCGCGGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 |
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| CDS-3UTR CCA 90 bp | CTGAACCCGCGGCAATCTCAGGCCAAGAGCCCAAGCTCTCTAAGCCACTCTCTCATTACAAACCACATATaGGTCATGAGCTCAGAGATG | + |
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Preference number: 4 (lower is better) Translates to: LNPRQSQAKSPSSLSHSLITNHI*VMSSEM Trigger: CATCTCTGAGCTCATGACCCATATGTGGTTTGTAAT...GAGAGAGTGGCTTAGAGAGCTTGGGCTCTTGGCCTGAGATTGCCGCGGGTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 |
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| CDS-3UTR CCA 90 bp | CCAGGAAGACAGAAAATCTCAAGAGTTCAATACCATCATTCCCTCCGACCAGCTGCATCCAAACCGGACTaGACCTTGGGGCCAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: PGRQKISRVQYHHSLRPAASKPD*TLGPEK Trigger: CTTCTCTGGCCCCAAGGTCCAGTCCGGTTTGGATGC...AGCTGGTCGGAGGGAATGATGGTATTGAACTCTTGAGATTTTCTGTCTTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 ENSMUST00000228716.3 |
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| CDS-3UTR CCA 90 bp | CACGTGGCTGCAGTAAGTATGGGCAAAAAGGAGGAGGCTGCCATCAGGGGCTCTATTACAAACCACATATaGGTCATGAGCTCAGAGATG | + |
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Preference number: 4 (lower is better) Translates to: HVAAVSMGKKEEAAIRGSITNHI*VMSSEM Trigger: CATCTCTGAGCTCATGACCCATATGTGGTTTGTAAT...AGAGCCCCTGATGGCAGCCTCCTCCTTTTTGCCCATACTTACTGCAGCCACGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019192.8 |
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| CDS-3UTR CAA 90 bp | GACCAGCTGGTGTTGAGCCTGGGTCACCCTGAACCCGCGGCAATCTCAGGCCAAGTTTCCAGCATGTGGTaGGTGCATTACAAACCACAT | + |
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Preference number: 5 (lower is better) Translates to: DQLVLSLGHPEPAAISGQVSSMW*VHYKPH Trigger: ATGTGGTTTGTAATGCACCAACCACATGCTGGAAAC...TTGGCCTGAGATTGCCGCGGGTTCAGGGTGACCCAGGCTCAACACCAGCTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 |
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| CDS-3UTR CAA 90 bp | CTGAACCCGCGGCAATCTCAGGCCAAGAGCCCAAGCTCTCTAAGCCACTCTCTCGTTTCCAGCATGTGGTaGGTGCATTACAAACCACAT | + |
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Preference number: 5 (lower is better) Translates to: LNPRQSQAKSPSSLSHSLVSSMW*VHYKPH Trigger: ATGTGGTTTGTAATGCACCAACCACATGCTGGAAAC...GAGAGAGTGGCTTAGAGAGCTTGGGCTCTTGGCCTGAGATTGCCGCGGGTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019192.8 ENSMUST00000228089.3 |
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